Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TG8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CA7 C C1 N N N 0 5.47 -5.07 2.269
2 NA1 N N1 N N N 0 4.68 -4.04 1.59
3 CA6 C C2 N Y N 0 4.727 -3.928 0.207
4 CA5 C C3 N Y N 0 5.609 -4.71 -0.528
5 CA4 C C4 N Y N 0 5.654 -4.597 -1.902
6 CA3 C C5 N Y N 0 4.822 -3.705 -2.561
7 CA2 C C6 N Y N 0 3.941 -2.921 -1.85
8 CA1 C C7 N Y N 0 3.878 -3.028 -0.458
9 CA C C8 N N N 0 2.938 -2.193 0.308
10 OA O O1 N N N 0 2.96 -2.211 1.523
11 O3' O O2 N N N 0 2.052 -1.408 -0.338
12 C3' C C9 S N N 0 1.156 -0.613 0.481
13 C2' C C10 R N N 0 1.724 0.814 0.676
14 O2' O O3 N N N 0 3.131 0.842 0.429
15 C4' C C11 R N N 0 -0.184 -0.39 -0.246
16 C5' C C12 N N N 0 -1.329 -0.979 0.581
17 O5' O O4 N N N 0 -2.551 -0.872 -0.153
18 PA P P1 N N N 0 -3.964 -1.393 0.416
19 O3A O O5 N N N 0 -3.917 -2.994 0.583
20 O2A O O6 N N N 0 -4.228 -0.767 1.73
21 O1A O O7 N N N 0 -5.136 -0.995 -0.613
22 PB P P2 N N N 0 -6.734 -0.844 -0.484
23 O3B O O8 N N N 0 -7.401 -0.933 -1.947
24 O2B O O9 N N N 0 -7.265 -1.932 0.367
25 O1B O O10 N N N 0 -7.086 0.579 0.181
26 O4' O O11 N N N 0 -0.361 1.029 -0.39
27 C1' C C13 R N N 0 0.956 1.62 -0.403
28 N9 N N2 N Y N 0 0.89 3.037 -0.04
29 C8 C C14 N Y N 0 -0.132 3.654 0.619
30 N7 N N3 N Y N 0 0.142 4.916 0.781
31 C5 C C15 N Y N 0 1.353 5.188 0.24
32 C4 C C16 N Y N 0 1.848 3.986 -0.294
33 N3 N N4 N Y N 0 3.038 3.983 -0.886
34 C2 C C17 N Y N 0 3.744 5.09 -0.977
35 N1 N N5 N Y N 0 3.319 6.244 -0.496
36 C6 C C18 N Y N 0 2.145 6.343 0.118
37 N6 N N6 N N N 0 1.709 7.556 0.623
38 H1 H H1 N N N 0 5.165 -6.054 1.914
39 H2 H H2 N N N 0 6.528 -4.918 2.052
40 H3 H H3 N N N 0 5.306 -5.003 3.344
41 H4 H H4 N N N 0 4.124 -3.436 2.107
42 H5 H H5 N N N 0 6.261 -5.407 -0.023
43 H6 H H6 N N N 0 6.343 -5.207 -2.468
44 H7 H H7 N N N 0 4.866 -3.625 -3.637
45 H8 H H8 N N N 0 3.295 -2.228 -2.369
46 H9 H H9 N N N 0 0.992 -1.095 1.445
47 H10 H H10 N N N 0 1.498 1.189 1.675
48 H11 H H11 N N N 0 3.517 1.728 0.451
49 H12 H H12 N N N 0 -0.156 -0.861 -1.228
50 H13 H H13 N N N 0 -1.122 -2.028 0.791
51 H14 H H14 N N N 0 -1.419 -0.431 1.518
52 H15 H H15 N N N 0 -3.748 -3.471 -0.241
53 H16 H H16 N N N 0 -8.365 -0.849 -1.945
54 H17 H H17 N N N 0 -6.768 1.339 -0.324
55 H18 H H18 N N N 0 1.423 1.494 -1.38
56 H22 H H22 N N N 0 2.265 8.346 0.534
57 H19 H H19 N N N 0 -1.035 3.168 0.955
58 H20 H H20 N N N 0 4.707 5.054 -1.464
59 H21 H H21 N N N 0 0.849 7.616 1.068