Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SSA    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N10 CA N C sing 1.47 N N
2 N10 HN11 N H sing 1.01 N N
3 N10 HN12 N H sing 1.01 N N
4 CA CB C C sing 1.53 N N
5 CA C9 C C sing 1.51 N N
6 CA HA C H sing 1.09 N N
7 CB OG C O sing 1.43 N N
8 CB HB1 C H sing 1.09 N N
9 CB HB2 C H sing 1.09 N N
10 OG HOG O H sing 0.97 N N
11 C9 O9 C O doub 1.21 N N
12 C9 N8 C N sing 1.35 N N
13 N8 S1 N S sing 1.65 N N
14 N8 HN8 N H sing 0.97 N N
15 S1 O1S S O doub 1.42 N N
16 S1 O2S S O doub 1.42 N N
17 S1 O5' S O sing 1.52 N N
18 O5' C5' O C sing 1.43 N N
19 C5' C4' C C sing 1.53 N N
20 C5' H5'1 C H sing 1.09 N N
21 C5' H5'2 C H sing 1.09 N N
22 C4' O4' C O sing 1.44 N N
23 C4' C3' C C sing 1.54 N N
24 C4' H4' C H sing 1.09 N N
25 O4' C1' O C sing 1.44 N N
26 C3' O3' C O sing 1.43 N N
27 C3' C2' C C sing 1.55 N N
28 C3' H3' C H sing 1.09 N N
29 O3' HO3' O H sing 0.97 N N
30 C2' O2' C O sing 1.43 N N
31 C2' C1' C C sing 1.55 N N
32 C2' H2' C H sing 1.09 N N
33 O2' HO2' O H sing 0.97 N N
34 C1' N9 C N sing 1.46 N N
35 C1' H1' C H sing 1.09 N N
36 N9 C8 N C sing 1.36 N Y
37 N9 C4 N C sing 1.37 N Y
38 C8 N7 C N doub 1.3 N Y
39 C8 H8 C H sing 1.08 N N
40 N7 C5 N C sing 1.36 N Y
41 C5 C6 C C sing 1.41 N Y
42 C5 C4 C C doub 1.4 N Y
43 C6 N6 C N sing 1.38 N N
44 C6 N1 C N doub 1.33 N Y
45 N6 HN61 N H sing 0.97 N N
46 N6 HN62 N H sing 0.97 N N
47 N1 C2 N C sing 1.32 N Y
48 C2 N3 C N doub 1.32 N Y
49 C2 H2 C H sing 1.08 N N
50 N3 C4 N C sing 1.33 N Y