Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SSA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N10 N N10 N N N 0 -3.443 0.189 -2.62
2 CA C CA S N N 0 -2.526 -0.476 -3.554
3 CB C CB N N N 0 -3.097 -0.399 -4.971
4 OG O OG N N N 0 -4.369 -1.049 -5.008
5 C9 C C9 N N N 0 -1.184 0.209 -3.515
6 O9 O O9 N N N 0 -1.116 1.393 -3.261
7 N8 N N8 N N N 0 -0.061 -0.492 -3.763
8 S1 S S1 N N N 0 1.412 0.261 -3.721
9 O1S O O1S N N N 0 2.378 -0.772 -3.848
10 O2S O O2S N N N 0 1.295 1.387 -4.579
11 O5' O O5* N N N 0 1.594 0.827 -2.32
12 C5' C C5* N N N 0 2.23 -0.189 -1.543
13 C4' C C4* R N N 0 2.443 0.317 -0.115
14 O4' O O4* N N N 0 1.174 0.608 0.493
15 C3' C C3* S N N 0 3.122 -0.775 0.732
16 O3' O O3* N N N 0 4.378 -0.317 1.237
17 C2' C C2* R N N 0 2.126 -1.022 1.896
18 O2' O O2* N N N 0 2.82 -1.186 3.134
19 C1' C C1* R N N 0 1.296 0.287 1.896
20 N9 N N9 N Y N 0 -0.023 0.065 2.491
21 C8 C C8 N Y N 0 -1.132 -0.393 1.845
22 N7 N N7 N Y N 0 -2.131 -0.471 2.676
23 C5 C C5 N Y N 0 -1.726 -0.068 3.905
24 C6 C C6 N Y N 0 -2.349 0.056 5.159
25 N6 N N6 N N N 0 -3.683 -0.272 5.322
26 N1 N N1 N Y N 0 -1.627 0.497 6.183
27 C2 C C2 N Y N 0 -0.353 0.813 6.037
28 N3 N N3 N Y N 0 0.27 0.712 4.882
29 C4 C C4 N Y N 0 -0.368 0.274 3.802
30 HN11 H 1HN1 N N N 0 -4.35 -0.232 -2.754
31 HN12 H 2HN1 N N N 0 -3.521 1.148 -2.924
32 HA H HA N N N 0 -2.408 -1.52 -3.266
33 HB1 H 1HB N N N 0 -3.214 0.645 -5.26
34 HB2 H 2HB N N N 0 -2.416 -0.893 -5.665
35 HOG H HOG N N N 0 -4.693 -0.978 -5.916
36 HN8 H HN8 N N N 0 -0.116 -1.439 -3.967
37 H5'1 H 1H5* N N N 0 1.6 -1.079 -1.523
38 H5'2 H 2H5* N N N 0 3.194 -0.437 -1.988
39 H4' H H4* N N N 0 3.062 1.213 -0.129
40 H3' H H3* N N N 0 3.256 -1.684 0.146
41 H1' H H1* N N N 0 1.827 1.077 2.426
42 HO3' H *HO3 N N N 0 4.723 -1.019 1.806
43 H2' H H2* N N N 0 1.492 -1.884 1.69
44 HO2' H *HO2 N N N 0 3.314 -2.014 3.07
45 H8 H H8 N N N 0 -1.177 -0.653 0.798
46 HN61 H 1HN6 N N N 0 -4.102 -0.181 6.192
47 H2 H H2 N N N 0 0.195 1.168 6.896
48 HN62 H 2HN6 N N N 0 -4.2 -0.594 4.567