Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SFG    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N CA N C sing 1.47 N N
2 N HN1 N H sing 1.01 N N
3 N HN2 N H sing 1.01 N N
4 CA C C C sing 1.51 N N
5 CA CB C C sing 1.53 N N
6 CA HA C H sing 1.09 N N
7 C O C O doub 1.21 N N
8 C OXT C O sing 1.34 N N
9 OXT HXT O H sing 0.97 N N
10 CB CG C C sing 1.53 N N
11 CB HB1 C H sing 1.09 N N
12 CB HB2 C H sing 1.09 N N
13 CG CD C C sing 1.53 N N
14 CG HG1 C H sing 1.09 N N
15 CG HG2 C H sing 1.09 N N
16 CD NE C N sing 1.47 N N
17 CD C5' C C sing 1.53 N N
18 CD HD C H sing 1.09 N N
19 NE HNE1 N H sing 1.01 N N
20 NE HNE2 N H sing 1.01 N N
21 C5' C4' C C sing 1.53 N N
22 C5' H5'1 C H sing 1.09 N N
23 C5' H5'2 C H sing 1.09 N N
24 C4' O4' C O sing 1.44 N N
25 C4' C3' C C sing 1.54 N N
26 C4' H4' C H sing 1.09 N N
27 O4' C1' O C sing 1.44 N N
28 C3' O3' C O sing 1.43 N N
29 C3' C2' C C sing 1.55 N N
30 C3' H3' C H sing 1.09 N N
31 O3' HO3' O H sing 0.97 N N
32 C2' O2' C O sing 1.43 N N
33 C2' C1' C C sing 1.55 N N
34 C2' H2' C H sing 1.09 N N
35 O2' HO2' O H sing 0.97 N N
36 C1' N9 C N sing 1.46 N N
37 C1' H1' C H sing 1.09 N N
38 N9 C8 N C sing 1.36 N Y
39 N9 C4 N C sing 1.37 N Y
40 C8 N7 C N doub 1.3 N Y
41 C8 H8 C H sing 1.08 N N
42 N7 C5 N C sing 1.35 N Y
43 C5 C6 C C sing 1.4 N Y
44 C5 C4 C C doub 1.4 N Y
45 C6 N6 C N sing 1.38 N N
46 C6 N1 C N doub 1.33 N Y
47 N6 HN61 N H sing 0.97 N N
48 N6 HN62 N H sing 0.97 N N
49 N1 C2 N C sing 1.32 N Y
50 C2 N3 C N doub 1.32 N Y
51 C2 H2 C H sing 1.08 N N
52 N3 C4 N C sing 1.33 N Y