data_SFG
#
_chem_comp.id SFG
_chem_comp.name SINEFUNGIN
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H23 N7 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2025-01-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 381.387
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SFG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AQJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SFG N N N 0 1 N N N N N N 6.853 40.335 42.914 6.756 0.396 0.788 N SFG 1
SFG CA CA C 0 1 N N S N N N 5.850 39.641 42.119 5.956 -0.819 0.584 CA SFG 2
SFG C C C 0 1 N N N N N N 5.607 40.397 40.805 6.780 -1.846 -0.151 C SFG 3
SFG O O O 0 1 N N N N N N 6.196 41.482 40.631 7.751 -1.502 -0.782 O SFG 4
SFG OXT OXT O 0 1 N N N N N N 4.840 39.903 39.956 6.434 -3.142 -0.104 OXT SFG 5
SFG CB CB C 0 1 N N N N N N 4.546 39.512 42.915 4.713 -0.478 -0.240 CB SFG 6
SFG CG CG C 0 1 N N N N N N 3.613 38.444 42.387 3.815 0.468 0.559 CG SFG 7
SFG CD CD C 0 1 N N S N N N 2.156 38.562 42.842 2.572 0.809 -0.265 CD SFG 8
SFG NE NE N 0 1 N N N N N N 1.987 38.008 44.217 2.969 1.567 -1.460 NE SFG 9
SFG "C5'" "C5'" C 0 1 N N N N N N 1.323 37.793 41.814 1.616 1.654 0.579 "C5'" SFG 10
SFG "C4'" "C4'" C 0 1 N N R N N N -0.126 37.439 42.111 0.320 1.890 -0.199 "C4'" SFG 11
SFG "O4'" "O4'" O 0 1 N N N N N N -0.816 38.542 42.735 -0.379 0.646 -0.374 "O4'" SFG 12
SFG "C3'" "C3'" C 0 1 N N S N N N -0.865 37.095 40.826 -0.607 2.829 0.598 "C3'" SFG 13
SFG "O3'" "O3'" O 0 1 N N N N N N -1.517 35.823 40.969 -0.882 4.014 -0.151 "O3'" SFG 14
SFG "C2'" "C2'" C 0 1 N N R N N N -1.892 38.182 40.666 -1.900 2.003 0.799 "C2'" SFG 15
SFG "O2'" "O2'" O 0 1 N N N N N N -3.117 37.646 40.170 -3.059 2.820 0.622 "O2'" SFG 16
SFG "C1'" "C1'" C 0 1 N N R N N N -2.066 38.741 42.059 -1.790 0.946 -0.330 "C1'" SFG 17
SFG N9 N9 N 0 1 Y N N N N N -2.442 40.162 42.027 -2.562 -0.252 0.009 N9 SFG 18
SFG C8 C8 C 0 1 Y N N N N N -2.081 41.132 41.158 -2.100 -1.347 0.676 C8 SFG 19
SFG N7 N7 N 0 1 Y N N N N N -2.630 42.289 41.312 -3.053 -2.224 0.804 N7 SFG 20
SFG C5 C5 C 0 1 Y N N N N N -3.453 42.078 42.412 -4.184 -1.749 0.229 C5 SFG 21
SFG C6 C6 C 0 1 Y N N N N N -4.398 42.878 43.036 -5.490 -2.240 0.064 C6 SFG 22
SFG N6 N6 N 0 1 N N N N N N -4.614 44.136 42.687 -5.846 -3.485 0.552 N6 SFG 23
SFG N1 N1 N 0 1 Y N N N N N -5.122 42.327 44.025 -6.376 -1.481 -0.572 N1 SFG 24
SFG C2 C2 C 0 1 Y N N N N N -4.905 41.062 44.354 -6.046 -0.292 -1.042 C2 SFG 25
SFG N3 N3 N 0 1 Y N N N N N -4.046 40.202 43.839 -4.835 0.208 -0.911 N3 SFG 26
SFG C4 C4 C 0 1 Y N N N N N -3.339 40.783 42.858 -3.884 -0.476 -0.283 C4 SFG 27
SFG HN1 HN1 H 0 1 N N N N N N 7.006 39.837 43.768 7.050 0.787 -0.094 HN1 SFG 28
SFG HN2 HN2 H 0 1 N N N N N N 7.709 40.385 42.400 6.249 1.075 1.335 HN2 SFG 29
SFG HA HA H 0 1 N N N N N N 6.215 38.631 41.880 5.652 -1.221 1.550 HA SFG 30
SFG HXT HXT H 0 1 N N N N N N 4.794 40.476 39.199 6.992 -3.763 -0.590 HXT SFG 31
SFG HB1 HB1 H 0 1 N N N N N N 4.804 39.257 43.953 5.014 0.005 -1.170 HB1 SFG 32
SFG HB2 HB2 H 0 1 N N N N N N 4.021 40.477 42.868 4.165 -1.393 -0.468 HB2 SFG 33
SFG HG1 HG1 H 0 1 N N N N N N 3.624 38.508 41.289 3.513 -0.015 1.488 HG1 SFG 34
SFG HG2 HG2 H 0 1 N N N N N N 3.991 37.472 42.735 4.363 1.383 0.786 HG2 SFG 35
SFG HD HD H 0 1 N N N N N N 1.831 39.612 42.894 2.073 -0.111 -0.568 HD SFG 36
SFG HNE1 HNE1 H 0 0 N N N N N N 1.031 38.094 44.496 2.174 1.748 -2.054 HNE1 SFG 37
SFG HNE2 HNE2 H 0 0 N N N N N N 2.250 37.043 44.222 3.434 2.425 -1.206 HNE2 SFG 38
SFG "H5'1" "H5'1" H 0 0 N N N N N N 1.303 38.419 40.910 1.391 1.129 1.508 "H5'1" SFG 39
SFG "H5'2" "H5'2" H 0 0 N N N N N N 1.843 36.836 41.657 2.082 2.612 0.807 "H5'2" SFG 40
SFG "H4'" "H4'" H 0 1 N N N N N N -0.114 36.575 42.792 0.547 2.328 -1.172 "H4'" SFG 41
SFG "H3'" "H3'" H 0 1 N N N N N N -0.191 37.029 39.959 -0.159 3.081 1.559 "H3'" SFG 42
SFG "HO3'" "HO3'" H 0 0 N N N N N N -1.978 35.611 40.166 -1.461 4.641 0.303 "HO3'" SFG 43
SFG "H2'" "H2'" H 0 1 N N N N N N -1.584 38.954 39.945 -1.909 1.526 1.779 "H2'" SFG 44
SFG "HO2'" "HO2'" H 0 0 N N N N N N -3.754 38.345 40.075 -3.125 3.551 1.251 "HO2'" SFG 45
SFG "H1'" "H1'" H 0 1 N N N N N N -2.883 38.229 42.588 -2.124 1.364 -1.280 "H1'" SFG 46
SFG H8 H8 H 0 1 N N N N N N -1.365 40.947 40.371 -1.092 -1.469 1.044 H8 SFG 47
SFG HN61 HN61 H 0 0 N N N N N N -5.341 44.520 43.256 -5.190 -4.030 1.015 HN61 SFG 48
SFG HN62 HN62 H 0 0 N N N N N N -3.776 44.666 42.815 -6.751 -3.813 0.432 HN62 SFG 49
SFG H2 H2 H 0 1 N N N N N N -5.518 40.680 45.157 -6.797 0.293 -1.553 H2 SFG 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SFG N CA SING N N 1
SFG N HN1 SING N N 2
SFG N HN2 SING N N 3
SFG CA C SING N N 4
SFG CA CB SING N N 5
SFG CA HA SING N N 6
SFG C O DOUB N N 7
SFG C OXT SING N N 8
SFG OXT HXT SING N N 9
SFG CB CG SING N N 10
SFG CB HB1 SING N N 11
SFG CB HB2 SING N N 12
SFG CG CD SING N N 13
SFG CG HG1 SING N N 14
SFG CG HG2 SING N N 15
SFG CD NE SING N N 16
SFG CD "C5'" SING N N 17
SFG CD HD SING N N 18
SFG NE HNE1 SING N N 19
SFG NE HNE2 SING N N 20
SFG "C5'" "C4'" SING N N 21
SFG "C5'" "H5'1" SING N N 22
SFG "C5'" "H5'2" SING N N 23
SFG "C4'" "O4'" SING N N 24
SFG "C4'" "C3'" SING N N 25
SFG "C4'" "H4'" SING N N 26
SFG "O4'" "C1'" SING N N 27
SFG "C3'" "O3'" SING N N 28
SFG "C3'" "C2'" SING N N 29
SFG "C3'" "H3'" SING N N 30
SFG "O3'" "HO3'" SING N N 31
SFG "C2'" "O2'" SING N N 32
SFG "C2'" "C1'" SING N N 33
SFG "C2'" "H2'" SING N N 34
SFG "O2'" "HO2'" SING N N 35
SFG "C1'" N9 SING N N 36
SFG "C1'" "H1'" SING N N 37
SFG N9 C8 SING Y N 38
SFG N9 C4 SING Y N 39
SFG C8 N7 DOUB Y N 40
SFG C8 H8 SING N N 41
SFG N7 C5 SING Y N 42
SFG C5 C6 SING Y N 43
SFG C5 C4 DOUB Y N 44
SFG C6 N6 SING N N 45
SFG C6 N1 DOUB Y N 46
SFG N6 HN61 SING N N 47
SFG N6 HN62 SING N N 48
SFG N1 C2 SING Y N 49
SFG C2 N3 DOUB Y N 50
SFG C2 H2 SING N N 51
SFG N3 C4 SING Y N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SFG SMILES ACDLabs 12.01 O=C(O)C(N)CCC(N)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O
SFG SMILES_CANONICAL CACTVS 3.370 N[C@@H](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
SFG SMILES CACTVS 3.370 N[CH](CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
SFG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C[C@H](CC[C@@H](C(=O)O)N)N)O)O)N
SFG SMILES "OpenEye OEToolkits" 1.7.0 c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CC(CCC(C(=O)O)N)N)O)O)N
SFG InChI InChI 1.03 InChI=1S/C15H23N7O5/c16-6(1-2-7(17)15(25)26)3-8-10(23)11(24)14(27-8)22-5-21-9-12(18)19-4-20-13(9)22/h4-8,10-11,14,23-24H,1-3,16-17H2,(H,25,26)(H2,18,19,20)/t6-,7-,8+,10+,11+,14+/m0/s1
SFG InChIKey InChI 1.03 LMXOHSDXUQEUSF-YECHIGJVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SFG "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5S)-2,5-diamino-6-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]hexanoic acid (non-preferred name)"
SFG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,5S)-6-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]-2,5-bis(azanyl)hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SFG 'Create component' 1999-07-08 RCSB
SFG 'Modify name' 2011-02-17 RCSB
SFG 'Modify descriptor' 2011-06-04 RCSB
SFG 'Modify synonyms' 2020-06-05 PDBE
SFG 'Modify PCM' 2025-01-14 PDBC
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id SFG
_pdbx_chem_comp_synonyms.name ADENOSYL-ORNITHINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id SFG
_pdbx_chem_comp_pcm.modified_residue_id THR
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom N
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id SFG
_pdbe_chem_comp_drugbank_details.drugbank_id DB01910
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Sinefungin
_pdbe_chem_comp_drugbank_details.description
'Sinefungin is a solid. This compound belongs to the purine nucleosides and analogues. These are compounds comprising a purine base attached to a sugar. The proteins that adenosyl-ornithine target include RdmB, modification methylase TaqI, rRNA (adenine-N6-)-methyltransferase, and modification methylase RsrI.'
_pdbe_chem_comp_drugbank_details.cas_number 58944-73-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
SFG ADENOSYL-ORNITHINE wwPDB ?
SFG '(2S,5S)-2,5-diamino-6-[(2R,3S,R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]hexanoic acid' DrugBank ?
SFG '6,9-Diamino-1-(6-amino-9H-purin-9-yl)-1,5,6,7,8,9-hexadeoxy-beta-D-ribo-decofuranuronic acid' DrugBank ?
SFG '6,9-Diamino-1-(6-amino-9H-purin-9-yl)-1,5,6,7,8,9-hexadeoxydecofuranuronic acid' DrugBank ?
SFG Adenosyl-ornithine DrugBank ?
SFG Sinefungin DrugBank ?
SFG sinefunginum DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id SFG
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01910
_pdbe_chem_comp_drugbank_classification.parent "5'-deoxyribonucleosides"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class "5'-deoxyribonucleosides"
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as 5'-deoxyribonucleosides. These are nucleosides in which the oxygen atom at the 5'position of the ribose moiety has been replaced by another atom. The nucleobases here are limited to purine, pyrimidine, and pyridine derivatives."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
SFG DB01910 'Type II methyltransferase M.RsrI' 'Rhodobacter sphaeroides' P14751 unknown 1
SFG DB01910 'Aclacinomycin 10-hydroxylase RdmB' 'Streptomyces purpurascens' Q54527 unknown 2
SFG DB01910 'rRNA adenine N-6-methyltransferase' 'Bacillus subtilis' P13956 unknown 3
SFG DB01910 'Type II methyltransferase M.TaqI' 'Thermus aquaticus' P14385 unknown 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SFG N N 15.143 5.210 1
SFG CA C 15.297 3.718 2
SFG C C 16.666 3.105 3
SFG O O 17.881 3.985 4
SFG OXT O 16.820 1.613 5
SFG CB C 14.082 2.838 6
SFG CG C 12.713 3.451 7
SFG CD C 11.498 2.571 8
SFG NE N 11.652 1.079 9
SFG "C5'" C 10.129 3.183 10
SFG "C4'" C 8.913 2.304 11
SFG "O4'" O 8.911 0.804 12
SFG "C3'" C 7.487 2.770 13
SFG "O3'" O 7.027 4.197 14
SFG "C2'" C 6.604 1.558 15
SFG "O2'" O 5.104 1.560 16
SFG "C1'" C 7.483 0.343 17
SFG N9 N 7.018 -1.083 18
SFG C8 C 7.893 -2.290 19
SFG N7 N 7.018 -3.497 20
SFG C5 C 5.598 -3.040 21
SFG C6 C 4.299 -3.790 22
SFG N6 N 4.299 -5.290 23
SFG N1 N 3.000 -3.040 24
SFG C2 C 3.000 -1.540 25
SFG N3 N 4.299 -0.790 26
SFG C4 C 5.598 -1.540 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SFG CA N SINGLE BEGINDASH 1
SFG CA C SINGLE NONE 2
SFG CA CB SINGLE NONE 3
SFG C O DOUBLE NONE 4
SFG C OXT SINGLE NONE 5
SFG CB CG SINGLE NONE 6
SFG CG CD SINGLE NONE 7
SFG CD NE SINGLE BEGINDASH 8
SFG CD "C5'" SINGLE NONE 9
SFG "C4'" "C5'" SINGLE BEGINWEDGE 10
SFG "C4'" "O4'" SINGLE NONE 11
SFG "C4'" "C3'" SINGLE NONE 12
SFG "O4'" "C1'" SINGLE NONE 13
SFG "C3'" "O3'" SINGLE BEGINDASH 14
SFG "C3'" "C2'" SINGLE NONE 15
SFG "C2'" "O2'" SINGLE BEGINDASH 16
SFG "C2'" "C1'" SINGLE NONE 17
SFG "C1'" N9 SINGLE BEGINWEDGE 18
SFG N9 C8 SINGLE NONE 19
SFG N9 C4 SINGLE NONE 20
SFG C8 N7 DOUBLE NONE 21
SFG N7 C5 SINGLE NONE 22
SFG C5 C6 DOUBLE NONE 23
SFG C5 C4 SINGLE NONE 24
SFG C6 N6 SINGLE NONE 25
SFG C6 N1 SINGLE NONE 26
SFG N1 C2 DOUBLE NONE 27
SFG C2 N3 SINGLE NONE 28
SFG N3 C4 DOUBLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SFG MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
SFG adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
SFG imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
SFG peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
SFG purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
SFG pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SFG "C4'" S1 1
SFG "O4'" S1 1
SFG "C3'" S1 1
SFG "C2'" S1 1
SFG "C1'" S1 1
SFG N9 S1 1
SFG C8 S1 1
SFG N7 S1 1
SFG C5 S1 1
SFG C6 S1 1
SFG N1 S1 1
SFG C2 S1 1
SFG N3 S1 1
SFG C4 S1 1
SFG N1 F1 1
SFG C6 F1 1
SFG C5 F1 1
SFG C4 F1 1
SFG N3 F1 1
SFG C2 F1 1
SFG N9 F1 1
SFG C8 F1 1
SFG N7 F1 1
SFG N6 F1 1
SFG C5 F2 1
SFG C4 F2 1
SFG N9 F2 1
SFG C8 F2 1
SFG N7 F2 1
SFG O F3 1
SFG C F3 1
SFG CA F3 1
SFG N F3 1
SFG N7 F4 1
SFG C8 F4 1
SFG N9 F4 1
SFG C4 F4 1
SFG C5 F4 1
SFG C6 F4 1
SFG N1 F4 1
SFG C2 F4 1
SFG N3 F4 1
SFG C5 F5 1
SFG C6 F5 1
SFG N1 F5 1
SFG C2 F5 1
SFG N3 F5 1
SFG C4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SFG
_pdbe_chem_comp_rdkit_properties.exactmw 381.176
_pdbe_chem_comp_rdkit_properties.amw 381.393
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 186.435
_pdbe_chem_comp_rdkit_properties.tpsa 208.650
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.872
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.067
_pdbe_chem_comp_rdkit_properties.chi0v 12.672
_pdbe_chem_comp_rdkit_properties.chi1v 6.658
_pdbe_chem_comp_rdkit_properties.chi2v 2.942
_pdbe_chem_comp_rdkit_properties.chi3v 2.942
_pdbe_chem_comp_rdkit_properties.chi4v 1.798
_pdbe_chem_comp_rdkit_properties.chi0n 35.672
_pdbe_chem_comp_rdkit_properties.chi1n 17.566
_pdbe_chem_comp_rdkit_properties.chi2n 2.942
_pdbe_chem_comp_rdkit_properties.chi3n 2.942
_pdbe_chem_comp_rdkit_properties.chi4n 1.798
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.380
_pdbe_chem_comp_rdkit_properties.kappa1 5.579
_pdbe_chem_comp_rdkit_properties.kappa2 7.699
_pdbe_chem_comp_rdkit_properties.kappa3 3.840
_pdbe_chem_comp_rdkit_properties.Phi 1.591
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SFG UniChem DrugBank DB01910
SFG UniChem ChEBI 45453
SFG UniChem ZINC ZINC000004217451
SFG UniChem eMolecules 10227654
SFG UniChem fdasrs W2U467CIIL
SFG UniChem ACTor 58944-73-3
SFG UniChem Nikkaji J275.624B
SFG UniChem BindingDb 50378739
SFG UniChem BRENDA 659
SFG UniChem MedChemExpress HY-101938
SFG UniChem 'Probes And Drugs' PD016321
SFG UniChem 'EPA CompTox Dashboard' DTXSID10207689
SFG UniChem SureChEMBL SCHEMBL167609
SFG UniChem 'PubChem TPHARMA' 14853605
SFG UniChem PubChem 65482
SFG UniChem NMRShiftDB 70018070
SFG UniChem ACTor 39315-74-7
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SFG N -3.239 -2.173 -2.696 ETKDGv3 1
SFG CA -3.466 -1.530 -1.399 ETKDGv3 2
SFG C -4.931 -1.553 -1.046 ETKDGv3 3
SFG O -5.776 -0.993 -1.795 ETKDGv3 4
SFG OXT -5.350 -2.186 0.120 ETKDGv3 5
SFG CB -2.905 -0.093 -1.427 ETKDGv3 6
SFG CG -3.078 0.696 -0.110 ETKDGv3 7
SFG CD -2.354 0.091 1.119 ETKDGv3 8
SFG NE -2.673 0.843 2.337 ETKDGv3 9
SFG "C5'" -0.820 -0.044 0.960 ETKDGv3 10
SFG "C4'" -0.043 1.286 0.745 ETKDGv3 11
SFG "O4'" 1.083 1.307 1.598 ETKDGv3 12
SFG "C3'" 0.445 1.475 -0.693 ETKDGv3 13
SFG "O3'" -0.501 2.165 -1.469 ETKDGv3 14
SFG "C2'" 1.716 2.274 -0.513 ETKDGv3 15
SFG "O2'" 1.501 3.661 -0.653 ETKDGv3 16
SFG "C1'" 2.153 1.922 0.912 ETKDGv3 17
SFG N9 3.306 1.021 0.896 ETKDGv3 18
SFG C8 4.674 1.414 0.655 ETKDGv3 19
SFG N7 5.466 0.454 0.250 ETKDGv3 20
SFG C5 4.642 -0.701 0.175 ETKDGv3 21
SFG C6 4.909 -1.921 -0.286 ETKDGv3 22
SFG N6 6.215 -2.293 -0.726 ETKDGv3 23
SFG N1 3.812 -2.862 -0.349 ETKDGv3 24
SFG C2 2.595 -2.515 0.003 ETKDGv3 25
SFG N3 2.321 -1.171 0.464 ETKDGv3 26
SFG C4 3.323 -0.351 0.552 ETKDGv3 27
SFG HN1 -3.805 -1.690 -3.432 ETKDGv3 28
SFG HN2 -3.573 -3.163 -2.643 ETKDGv3 29
SFG HA -2.906 -2.115 -0.639 ETKDGv3 30
SFG HXT -6.330 -2.206 0.377 ETKDGv3 31
SFG HB1 -3.415 0.477 -2.235 ETKDGv3 32
SFG HB2 -1.831 -0.133 -1.704 ETKDGv3 33
SFG HG1 -4.163 0.775 0.118 ETKDGv3 34
SFG HG2 -2.727 1.736 -0.272 ETKDGv3 35
SFG HD -2.743 -0.939 1.269 ETKDGv3 36
SFG HNE1 -2.599 1.870 2.158 ETKDGv3 37
SFG HNE2 -3.671 0.657 2.590 ETKDGv3 38
SFG "H5'1" -0.446 -0.525 1.892 ETKDGv3 39
SFG "H5'2" -0.594 -0.780 0.161 ETKDGv3 40
SFG "H4'" -0.676 2.155 1.023 ETKDGv3 41
SFG "H3'" 0.696 0.495 -1.162 ETKDGv3 42
SFG "HO3'" -0.197 2.094 -2.411 ETKDGv3 43
SFG "H2'" 2.473 1.962 -1.267 ETKDGv3 44
SFG "HO2'" 0.831 3.941 0.025 ETKDGv3 45
SFG "H1'" 2.440 2.843 1.467 ETKDGv3 46
SFG H8 5.021 2.432 0.775 ETKDGv3 47
SFG HN61 6.387 -3.256 -1.091 ETKDGv3 48
SFG HN62 7.012 -1.618 -0.690 ETKDGv3 49
SFG H2 1.791 -3.235 -0.060 ETKDGv3 50
#