Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SFG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 6.756 0.396 0.788
2 CA C CA S N N 0 5.956 -0.819 0.584
3 C C C N N N 0 6.78 -1.846 -0.151
4 O O O N N N 0 7.751 -1.502 -0.782
5 OXT O OXT N N N 0 6.434 -3.142 -0.104
6 CB C CB N N N 0 4.713 -0.478 -0.24
7 CG C CG N N N 0 3.815 0.468 0.559
8 CD C CD S N N 0 2.572 0.809 -0.265
9 NE N NE N N N 0 2.969 1.567 -1.46
10 C5' C C5' N N N 0 1.616 1.654 0.579
11 C4' C C4' R N N 0 0.32 1.89 -0.199
12 O4' O O4' N N N 0 -0.379 0.646 -0.374
13 C3' C C3' S N N 0 -0.607 2.829 0.598
14 O3' O O3' N N N 0 -0.882 4.014 -0.151
15 C2' C C2' R N N 0 -1.9 2.003 0.799
16 C8 C C8 N Y N 0 -2.1 -1.347 0.676
17 O2' O O2' N N N 0 -3.059 2.82 0.622
18 C1' C C1' R N N 0 -1.79 0.946 -0.33
19 N9 N N9 N Y N 0 -2.562 -0.252 0.009
20 N7 N N7 N Y N 0 -3.053 -2.224 0.804
21 C5 C C5 N Y N 0 -4.184 -1.749 0.229
22 C6 C C6 N Y N 0 -5.49 -2.24 0.064
23 N6 N N6 N N N 0 -5.846 -3.485 0.552
24 N1 N N1 N Y N 0 -6.376 -1.481 -0.572
25 C2 C C2 N Y N 0 -6.046 -0.292 -1.042
26 N3 N N3 N Y N 0 -4.835 0.208 -0.911
27 C4 C C4 N Y N 0 -3.884 -0.476 -0.283
28 HN1 H HN1 N N N 0 7.05 0.787 -0.094
29 HN2 H HN2 N N N 0 6.249 1.075 1.335
30 HA H HA N N N 0 5.652 -1.221 1.55
31 HXT H HXT N N N 0 6.992 -3.763 -0.59
32 HB1 H HB1 N N N 0 5.014 0.005 -1.17
33 HB2 H HB2 N N N 0 4.165 -1.393 -0.468
34 HG1 H HG1 N N N 0 3.513 -0.015 1.488
35 HG2 H HG2 N N N 0 4.363 1.383 0.786
36 HD H HD N N N 0 2.073 -0.111 -0.568
37 HNE1 H HNE1 N N N 0 2.174 1.748 -2.054
38 HNE2 H HNE2 N N N 0 3.434 2.425 -1.206
39 H5'1 H H5'1 N N N 0 1.391 1.129 1.508
40 H5'2 H H5'2 N N N 0 2.082 2.612 0.807
41 H4' H H4' N N N 0 0.547 2.328 -1.172
42 H3' H H3' N N N 0 -0.159 3.081 1.559
43 HO3' H HO3' N N N 0 -1.461 4.641 0.303
44 H2' H H2' N N N 0 -1.909 1.526 1.779
45 HO2' H HO2' N N N 0 -3.125 3.551 1.251
46 H1' H H1' N N N 0 -2.124 1.364 -1.28
47 H2 H H2 N N N 0 -6.797 0.293 -1.553
48 H8 H H8 N N N 0 -1.092 -1.469 1.044
49 HN61 H HN61 N N N 0 -5.19 -4.03 1.015
50 HN62 H HN62 N N N 0 -6.751 -3.813 0.432