Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RBF    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.33 N N
2 N1 C10 N C doub 1.32 N N
3 C2 O2 C O doub 1.22 N N
4 C2 N3 C N sing 1.34 N N
5 N3 C4 N C sing 1.35 N N
6 N3 HN3 N H sing 0.97 N N
7 C4 O4 C O doub 1.22 N N
8 C4 C4A C C sing 1.48 N N
9 C4A N5 C N doub 1.31 N N
10 C4A C10 C C sing 1.47 N N
11 N5 C5A N C sing 1.34 N N
12 C5A C6 C C doub 1.41 N Y
13 C5A C9A C C sing 1.41 N Y
14 C6 C7 C C sing 1.36 N Y
15 C6 HC6 C H sing 1.08 N N
16 C7 C7M C C sing 1.51 N N
17 C7 C8 C C doub 1.39 N Y
18 C7M HC71 C H sing 1.09 N N
19 C7M HC72 C H sing 1.09 N N
20 C7M HC73 C H sing 1.09 N N
21 C8 C8M C C sing 1.51 N N
22 C8 C9 C C sing 1.38 N Y
23 C8M HC81 C H sing 1.09 N N
24 C8M HC82 C H sing 1.09 N N
25 C8M HC83 C H sing 1.09 N N
26 C9 C9A C C doub 1.39 N Y
27 C9 HC9 C H sing 1.08 N N
28 C9A N10 C N sing 1.38 N N
29 N10 C10 N C sing 1.36 N N
30 N10 C1' N C sing 1.47 N N
31 C1' C2' C C sing 1.53 N N
32 C1' HC11 C H sing 1.09 N N
33 C1' HC12 C H sing 1.09 N N
34 C2' O2' C O sing 1.43 N N
35 C2' C3' C C sing 1.53 N N
36 C2' HC2' C H sing 1.09 N N
37 O2' HO2' O H sing 0.97 N N
38 C3' O3' C O sing 1.43 N N
39 C3' C4' C C sing 1.53 N N
40 C3' HC3' C H sing 1.09 N N
41 O3' HO3' O H sing 0.97 N N
42 C4' O4' C O sing 1.43 N N
43 C4' C5' C C sing 1.53 N N
44 C4' HC4' C H sing 1.09 N N
45 O4' HO4' O H sing 0.97 N N
46 C5' O5' C O sing 1.43 N N
47 C5' HC51 C H sing 1.09 N N
48 C5' HC52 C H sing 1.09 N N
49 O5' HO5' O H sing 0.97 N N