Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RBF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 0.665 -2.485 0.513
2 C2 C C2 N N N 0 1.312 -3.611 0.222
3 O2 O O2 N N N 0 0.741 -4.668 0.428
4 N3 N N3 N N N 0 2.552 -3.655 -0.285
5 C4 C C4 N N N 0 3.248 -2.523 -0.54
6 O4 O O4 N N N 0 4.373 -2.561 -1.0
7 C4A C C4A N N N 0 2.581 -1.238 -0.236
8 N5 N N5 N N N 0 3.162 -0.084 -0.444
9 C5A C C5A N Y N 0 2.53 1.061 -0.157
10 C6 C C6 N Y N 0 3.174 2.293 -0.388
11 C7 C C7 N Y N 0 2.533 3.46 -0.098
12 C7M C C7M N N N 0 3.228 4.773 -0.348
13 C8 C C8 N Y N 0 1.245 3.452 0.426
14 C8M C C8M N N N 0 0.558 4.757 0.738
15 C9 C C9 N Y N 0 0.591 2.263 0.663
16 C9A C C9A N Y N 0 1.221 1.056 0.376
17 N10 N N10 N N N 0 0.571 -0.137 0.611
18 C10 C C10 N N N 0 1.218 -1.299 0.318
19 C1' C C1' N N N 0 -0.786 -0.154 1.164
20 C2' C C2' S N N 0 -1.803 -0.127 0.021
21 O2' O O2' N N N 0 -1.618 1.061 -0.752
22 C3' C C3' S N N 0 -3.22 -0.145 0.598
23 O3' O O3' N N N 0 -3.404 -1.332 1.371
24 C4' C C4' R N N 0 -4.236 -0.117 -0.545
25 O4' O O4' N N N 0 -4.052 1.07 -1.319
26 C5' C C5' N N N 0 -5.653 -0.135 0.032
27 O5' O O5' N N N 0 -6.601 -0.227 -1.034
28 HN3 H HN3 N N N 0 2.959 -4.516 -0.472
29 HC6 H HC6 N N N 0 4.174 2.312 -0.795
30 HC71 H HC71 N N N 0 3.007 5.114 -1.36
31 HC72 H HC72 N N N 0 2.874 5.514 0.369
32 HC73 H HC73 N N N 0 4.304 4.643 -0.235
33 HC81 H HC81 N N N 0 0.005 5.095 -0.138
34 HC82 H HC82 N N N 0 -0.131 4.615 1.571
35 HC83 H HC83 N N N 0 1.304 5.504 1.008
36 HC9 H HC9 N N N 0 -0.409 2.268 1.071
37 HC11 H HC11 N N N 0 -0.927 -1.06 1.754
38 HC12 H HC12 N N N 0 -0.931 0.719 1.799
39 HC2' H HC2' N N N 0 -1.658 -1.0 -0.615
40 HO2' H HO2' N N N 0 -1.732 1.879 -0.25
41 HC3' H HC3' N N N 0 -3.364 0.729 1.234
42 HO3' H HO3' N N N 0 -3.29 -2.151 0.868
43 HC4' H HC4' N N N 0 -4.092 -0.991 -1.181
44 HO4' H HO4' N N N 0 -4.166 1.888 -0.816
45 HC51 H HC51 N N N 0 -5.765 -0.995 0.693
46 HC52 H HC52 N N N 0 -5.828 0.781 0.595
47 HO5' H HO5' N N N 0 -7.522 -0.244 -0.741