data_RBF
#
_chem_comp.id RBF
_chem_comp.name RIBOFLAVIN
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H20 N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "RIBOFLAVINE; VITAMIN B2"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 376.364
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RBF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BU5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RBF N1 N1 N 0 1 N N N N N N 63.558 13.186 32.470 0.665 -2.485 0.513 N1 RBF 1
RBF C2 C2 C 0 1 N N N N N N 63.169 11.920 32.047 1.312 -3.611 0.222 C2 RBF 2
RBF O2 O2 O 0 1 N N N N N N 62.558 11.667 31.043 0.741 -4.668 0.428 O2 RBF 3
RBF N3 N3 N 0 1 N N N N N N 63.547 10.872 32.846 2.552 -3.655 -0.285 N3 RBF 4
RBF C4 C4 C 0 1 N N N N N N 64.253 11.071 34.006 3.248 -2.523 -0.540 C4 RBF 5
RBF O4 O4 O 0 1 N N N N N N 64.578 10.181 34.775 4.373 -2.561 -1.000 O4 RBF 6
RBF C4A C4A C 0 1 N N N N N N 64.656 12.448 34.429 2.581 -1.238 -0.236 C4A RBF 7
RBF N5 N5 N 0 1 N N N N N N 65.305 12.580 35.525 3.162 -0.084 -0.444 N5 RBF 8
RBF C5A C5A C 0 1 Y N N N N N 65.711 13.877 35.822 2.530 1.061 -0.157 C5A RBF 9
RBF C6 C6 C 0 1 Y N N N N N 66.487 14.059 36.962 3.174 2.293 -0.388 C6 RBF 10
RBF C7 C7 C 0 1 Y N N N N N 66.917 15.314 37.283 2.533 3.460 -0.098 C7 RBF 11
RBF C7M C7M C 0 1 N N N N N N 67.758 15.674 38.495 3.228 4.773 -0.348 C7M RBF 12
RBF C8 C8 C 0 1 Y N N N N N 66.550 16.417 36.470 1.245 3.452 0.426 C8 RBF 13
RBF C8M C8M C 0 1 N N N N N N 67.052 17.822 36.915 0.558 4.757 0.738 C8M RBF 14
RBF C9 C9 C 0 1 Y N N N N N 65.798 16.295 35.350 0.591 2.263 0.663 C9 RBF 15
RBF C9A C9A C 0 1 Y N N N N N 65.386 14.989 35.045 1.221 1.056 0.376 C9A RBF 16
RBF N10 N10 N 0 1 N N N N N N 64.626 14.718 33.932 0.571 -0.137 0.611 N10 RBF 17
RBF C10 C10 C 0 1 N N N N N N 64.263 13.480 33.580 1.218 -1.299 0.318 C10 RBF 18
RBF "C1'" "C1'" C 0 1 N N N N N N 64.153 15.809 32.997 -0.786 -0.154 1.164 "C1'" RBF 19
RBF "C2'" "C2'" C 0 1 N N S N N N 62.983 16.483 33.740 -1.803 -0.127 0.021 "C2'" RBF 20
RBF "O2'" "O2'" O 0 1 N N N N N N 61.799 15.638 33.723 -1.618 1.061 -0.752 "O2'" RBF 21
RBF "C3'" "C3'" C 0 1 N N S N N N 62.539 17.723 33.018 -3.220 -0.145 0.598 "C3'" RBF 22
RBF "O3'" "O3'" O 0 1 N N N N N N 61.857 17.222 31.904 -3.404 -1.332 1.371 "O3'" RBF 23
RBF "C4'" "C4'" C 0 1 N N R N N N 63.558 18.723 32.686 -4.236 -0.117 -0.545 "C4'" RBF 24
RBF "O4'" "O4'" O 0 1 N N N N N N 64.592 19.005 33.600 -4.052 1.070 -1.319 "O4'" RBF 25
RBF "C5'" "C5'" C 0 1 N N N N N N 62.790 20.110 32.744 -5.653 -0.135 0.032 "C5'" RBF 26
RBF "O5'" "O5'" O 0 1 N N N N N N 62.460 20.225 31.363 -6.601 -0.227 -1.034 "O5'" RBF 27
RBF HN3 HN3 H 0 1 N N N N N N 63.302 9.940 32.577 2.959 -4.516 -0.472 HN3 RBF 28
RBF HC6 HC6 H 0 1 N N N N N N 66.746 13.217 37.586 4.174 2.312 -0.795 HC6 RBF 29
RBF HC71 HC71 H 0 0 N N N N N N 68.824 15.624 38.230 3.007 5.114 -1.360 HC71 RBF 30
RBF HC72 HC72 H 0 0 N N N N N N 67.510 16.694 38.824 2.874 5.514 0.369 HC72 RBF 31
RBF HC73 HC73 H 0 0 N N N N N N 67.549 14.965 39.310 4.304 4.643 -0.235 HC73 RBF 32
RBF HC81 HC81 H 0 0 N N N N N N 68.031 18.024 36.456 0.005 5.095 -0.138 HC81 RBF 33
RBF HC82 HC82 H 0 0 N N N N N N 66.331 18.588 36.593 -0.131 4.615 1.571 HC82 RBF 34
RBF HC83 HC83 H 0 0 N N N N N N 67.148 17.847 38.010 1.304 5.504 1.008 HC83 RBF 35
RBF HC9 HC9 H 0 1 N N N N N N 65.534 17.143 34.735 -0.409 2.268 1.071 HC9 RBF 36
RBF HC11 HC11 H 0 0 N N N N N N 64.959 16.533 32.806 -0.927 -1.060 1.754 HC11 RBF 37
RBF HC12 HC12 H 0 0 N N N N N N 63.811 15.381 32.043 -0.931 0.719 1.799 HC12 RBF 38
RBF "HC2'" "HC2'" H 0 0 N N N N N N 63.283 16.725 34.770 -1.658 -1.000 -0.615 "HC2'" RBF 39
RBF "HO2'" "HO2'" H 0 0 N N N N N N 61.092 16.073 34.186 -1.732 1.879 -0.250 "HO2'" RBF 40
RBF "HC3'" "HC3'" H 0 0 N N N N N N 61.803 18.218 33.669 -3.364 0.729 1.234 "HC3'" RBF 41
RBF "HO3'" "HO3'" H 0 0 N N N N N N 61.534 17.945 31.379 -3.290 -2.151 0.868 "HO3'" RBF 42
RBF "HC4'" "HC4'" H 0 0 N N N N N N 63.945 18.566 31.668 -4.092 -0.991 -1.181 "HC4'" RBF 43
RBF "HO4'" "HO4'" H 0 0 N N N N N N 65.164 19.670 33.236 -4.166 1.888 -0.816 "HO4'" RBF 44
RBF HC51 HC51 H 0 0 N N N N N N 61.895 20.062 33.382 -5.765 -0.995 0.693 HC51 RBF 45
RBF HC52 HC52 H 0 0 N N N N N N 63.440 20.930 33.085 -5.828 0.781 0.595 HC52 RBF 46
RBF "HO5'" "HO5'" H 0 0 N N N N N N 61.979 21.031 31.218 -7.522 -0.244 -0.741 "HO5'" RBF 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RBF N1 C2 SING N N 1
RBF N1 C10 DOUB N N 2
RBF C2 O2 DOUB N N 3
RBF C2 N3 SING N N 4
RBF N3 C4 SING N N 5
RBF N3 HN3 SING N N 6
RBF C4 O4 DOUB N N 7
RBF C4 C4A SING N N 8
RBF C4A N5 DOUB N N 9
RBF C4A C10 SING N N 10
RBF N5 C5A SING N N 11
RBF C5A C6 DOUB Y N 12
RBF C5A C9A SING Y N 13
RBF C6 C7 SING Y N 14
RBF C6 HC6 SING N N 15
RBF C7 C7M SING N N 16
RBF C7 C8 DOUB Y N 17
RBF C7M HC71 SING N N 18
RBF C7M HC72 SING N N 19
RBF C7M HC73 SING N N 20
RBF C8 C8M SING N N 21
RBF C8 C9 SING Y N 22
RBF C8M HC81 SING N N 23
RBF C8M HC82 SING N N 24
RBF C8M HC83 SING N N 25
RBF C9 C9A DOUB Y N 26
RBF C9 HC9 SING N N 27
RBF C9A N10 SING N N 28
RBF N10 C10 SING N N 29
RBF N10 "C1'" SING N N 30
RBF "C1'" "C2'" SING N N 31
RBF "C1'" HC11 SING N N 32
RBF "C1'" HC12 SING N N 33
RBF "C2'" "O2'" SING N N 34
RBF "C2'" "C3'" SING N N 35
RBF "C2'" "HC2'" SING N N 36
RBF "O2'" "HO2'" SING N N 37
RBF "C3'" "O3'" SING N N 38
RBF "C3'" "C4'" SING N N 39
RBF "C3'" "HC3'" SING N N 40
RBF "O3'" "HO3'" SING N N 41
RBF "C4'" "O4'" SING N N 42
RBF "C4'" "C5'" SING N N 43
RBF "C4'" "HC4'" SING N N 44
RBF "O4'" "HO4'" SING N N 45
RBF "C5'" "O5'" SING N N 46
RBF "C5'" HC51 SING N N 47
RBF "C5'" HC52 SING N N 48
RBF "O5'" "HO5'" SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RBF SMILES ACDLabs 12.01 N=2C(=O)NC(=O)C3=Nc1cc(C)c(C)cc1N(C=23)CC(O)C(O)C(O)CO
RBF InChI InChI 1.03 InChI=1S/C17H20N4O6/c1-7-3-9-10(4-8(7)2)21(5-11(23)14(25)12(24)6-22)15-13(18-9)16(26)20-17(27)19-15/h3-4,11-12,14,22-25H,5-6H2,1-2H3,(H,20,26,27)/t11-,12+,14-/m0/s1
RBF InChIKey InChI 1.03 AUNGANRZJHBGPY-SCRDCRAPSA-N
RBF SMILES_CANONICAL CACTVS 3.385 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO)c2cc1C
RBF SMILES CACTVS 3.385 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO)c2cc1C
RBF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O
RBF SMILES "OpenEye OEToolkits" 1.7.6 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RBF "SYSTEMATIC NAME" ACDLabs 12.01 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-D-ribitol
RBF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 7,8-dimethyl-10-[(2S,3S,4R)-2,3,4,5-tetrakis(oxidanyl)pentyl]benzo[g]pteridine-2,4-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RBF 'Create component' 1999-07-08 RCSB
RBF 'Modify aromatic_flag' 2011-06-04 RCSB
RBF 'Modify descriptor' 2011-06-04 RCSB
RBF 'Modify aromatic_flag' 2016-02-17 RCSB
RBF 'Modify synonyms' 2020-06-05 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 RBF RIBOFLAVINE ? ?
2 RBF "VITAMIN B2" ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id RBF
_pdbe_chem_comp_drugbank_details.drugbank_id DB00140
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Riboflavin
_pdbe_chem_comp_drugbank_details.description
'Nutritional factor found in milk, eggs, malted barley, liver, kidney, heart, and leafy vegetables. The richest natural source is yeast. It occurs in the free form only in the retina of the eye, in whey, and in urine; its principal forms in tissues and cells are as flavin mononucleotide and flavin-adenine dinucleotide.'
_pdbe_chem_comp_drugbank_details.cas_number 83-88-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Binds to riboflavin hydrogenase, riboflavin kinase, and riboflavin synthase. Riboflavin is the precursor of flavin mononucleotide (FMN, riboflavin monophosphate) and flavin adenine dinucleotide (FAD). The antioxidant activity of riboflavin is principally derived from its role as a precursor of FAD and the role of this cofactor in the production of the antioxidant reduced glutathione. Reduced glutathione is the cofactor of the selenium-containing glutathione peroxidases among other things. The glutathione peroxidases are major antioxidant enzymes. Reduced glutathione is generated by the FAD-containing enzyme glutathione reductase.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
RBF RIBOFLAVINE wwPDB ?
RBF 'VITAMIN B2' wwPDB ?
RBF '1-Deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)pentitol' DrugBank ?
RBF 6,7-Dimethyl-9-D-ribitylisoalloxazine DrugBank ?
RBF 7,8-Dimethyl-10-(D-ribo-2,3,4,5-tetrahydroxypentyl)isoalloxazine DrugBank ?
RBF 7,8-Dimethyl-10-ribitylisoalloxazine DrugBank ?
RBF Lactoflavin DrugBank ?
RBF Lactoflavine DrugBank ?
RBF Riboflavin DrugBank ?
RBF Riboflavinum DrugBank ?
RBF 'Vitamin B2' DrugBank ?
RBF 'Vitamin Bi' DrugBank ?
RBF 'Vitamin G' DrugBank ?
RBF Bisulase DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id RBF
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00140
_pdbe_chem_comp_drugbank_classification.parent Flavins
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pteridines and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as flavins. These are compounds containing a flavin (7,8-dimethyl-benzo[g]pteridine-2,4-dione) moiety, with a structure characterized by an isoalloaxzine tricyclic ring.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
RBF DB00140 'Riboflavin kinase' Humans Q969G6 yes 1
RBF DB00140 'Riboflavin synthase' 'Escherichia coli (strain K12)' P0AFU8 yes 2
RBF DB00140 'Flavin reductase (NADPH)' Humans P30043 yes 3
RBF DB00140 Myeloperoxidase Humans P05164 unknown 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RBF N1 N 10.935 -1.512 1
RBF C2 C 12.294 -2.283 2
RBF O2 O 13.590 -1.528 3
RBF N3 N 12.294 -3.845 4
RBF C4 C 10.935 -4.616 5
RBF O4 O 10.918 -6.116 6
RBF C4A C 9.594 -3.814 7
RBF N5 N 8.295 -4.564 8
RBF C5A C 6.996 -3.814 9
RBF C6 C 5.655 -4.616 10
RBF C7 C 4.296 -3.845 11
RBF C7M C 3.000 -4.600 12
RBF C8 C 4.296 -2.283 13
RBF C8M C 3.000 -1.528 14
RBF C9 C 5.655 -1.512 15
RBF C9A C 6.996 -2.314 16
RBF N10 N 8.295 -1.564 17
RBF C10 C 9.594 -2.314 18
RBF "C1'" C 8.295 -0.064 19
RBF "C2'" C 6.996 0.686 20
RBF "O2'" O 5.697 -0.064 21
RBF "C3'" C 6.996 2.186 22
RBF "O3'" O 8.295 2.936 23
RBF "C4'" C 5.697 2.936 24
RBF "O4'" O 4.398 2.186 25
RBF "C5'" C 5.697 4.436 26
RBF "O5'" O 4.398 5.186 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RBF N1 C2 SINGLE NONE 1
RBF N1 C10 DOUBLE NONE 2
RBF C2 O2 DOUBLE NONE 3
RBF C2 N3 SINGLE NONE 4
RBF N3 C4 SINGLE NONE 5
RBF C4 O4 DOUBLE NONE 6
RBF C4 C4A SINGLE NONE 7
RBF C4A N5 DOUBLE NONE 8
RBF C4A C10 SINGLE NONE 9
RBF N5 C5A SINGLE NONE 10
RBF C5A C6 SINGLE NONE 11
RBF C5A C9A DOUBLE NONE 12
RBF C6 C7 DOUBLE NONE 13
RBF C7 C7M SINGLE NONE 14
RBF C7 C8 SINGLE NONE 15
RBF C8 C8M SINGLE NONE 16
RBF C8 C9 DOUBLE NONE 17
RBF C9 C9A SINGLE NONE 18
RBF C9A N10 SINGLE NONE 19
RBF N10 C10 SINGLE NONE 20
RBF N10 "C1'" SINGLE NONE 21
RBF "C1'" "C2'" SINGLE NONE 22
RBF "C2'" "O2'" SINGLE BEGINDASH 23
RBF "C2'" "C3'" SINGLE NONE 24
RBF "C3'" "O3'" SINGLE BEGINWEDGE 25
RBF "C3'" "C4'" SINGLE NONE 26
RBF "C4'" "O4'" SINGLE BEGINDASH 27
RBF "C4'" "C5'" SINGLE NONE 28
RBF "C5'" "O5'" SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RBF MurckoScaffold S1 scaffold 'O=c1nc2[nH]c3ccccc3nc-2c(=O)[nH]1' InChI=1S/C10H6N4O2/c15-9-7-8(13-10(16)14-9)12-6-4-2-1-3-5(6)11-7/h1-4H,(H2,12,13,14,15,16) HAUGRYOERYOXHX-UHFFFAOYSA-N
RBF phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RBF N1 S1 1
RBF C2 S1 1
RBF O2 S1 1
RBF N3 S1 1
RBF C4 S1 1
RBF O4 S1 1
RBF C4A S1 1
RBF N5 S1 1
RBF C5A S1 1
RBF C6 S1 1
RBF C7 S1 1
RBF C8 S1 1
RBF C9 S1 1
RBF C9A S1 1
RBF N10 S1 1
RBF C10 S1 1
RBF C5A F1 1
RBF C6 F1 1
RBF C7 F1 1
RBF C8 F1 1
RBF C9 F1 1
RBF C9A F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RBF
_pdbe_chem_comp_rdkit_properties.exactmw 376.138
_pdbe_chem_comp_rdkit_properties.amw 376.369
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.412
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 180.796
_pdbe_chem_comp_rdkit_properties.tpsa 161.560
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.842
_pdbe_chem_comp_rdkit_properties.CrippenMR 91.777
_pdbe_chem_comp_rdkit_properties.chi0v 12.738
_pdbe_chem_comp_rdkit_properties.chi1v 6.737
_pdbe_chem_comp_rdkit_properties.chi2v 3.152
_pdbe_chem_comp_rdkit_properties.chi3v 3.152
_pdbe_chem_comp_rdkit_properties.chi4v 2.009
_pdbe_chem_comp_rdkit_properties.chi0n 32.738
_pdbe_chem_comp_rdkit_properties.chi1n 16.317
_pdbe_chem_comp_rdkit_properties.chi2n 3.152
_pdbe_chem_comp_rdkit_properties.chi3n 3.152
_pdbe_chem_comp_rdkit_properties.chi4n 2.009
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.660
_pdbe_chem_comp_rdkit_properties.kappa1 6.175
_pdbe_chem_comp_rdkit_properties.kappa2 7.158
_pdbe_chem_comp_rdkit_properties.kappa3 3.471
_pdbe_chem_comp_rdkit_properties.Phi 1.637
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RBF UniChem DrugBank DB00140
RBF UniChem 'Guide to Pharmacology' 6578
RBF UniChem 'PubChem DOTF' 24714797
RBF UniChem 'KEGG LIGAND' C00255
RBF UniChem ChEBI 17015
RBF UniChem ZINC ZINC000002036848
RBF UniChem eMolecules 711592
RBF UniChem fdasrs TLM2976OFR
RBF UniChem PharmGKB PA451242
RBF UniChem HMDB HMDB0000244
RBF UniChem Selleck Riboflavin-Vitamin-B2
RBF UniChem NMRShiftDB 30095494
RBF UniChem LINCS LSM-4084
RBF UniChem Recon ribflv
RBF UniChem Nikkaji J3.876H
RBF UniChem BindingDb 50362895
RBF UniChem 'EPA CompTox Dashboard' DTXSID8021777
RBF UniChem DrugCentral 2834
RBF UniChem MetaboLights MTBLC17015
RBF UniChem BRENDA 229895
RBF UniChem BRENDA 229896
RBF UniChem BRENDA 31626
RBF UniChem BRENDA 351
RBF UniChem ChemicalBook CB4383318
RBF UniChem DailyMed RIBOFLAVIN
RBF UniChem ClinicalTrials RIBOFLAVIN
RBF UniChem rxnorm RIBOFLAVIN
RBF UniChem rxnorm 'RIBOFLAVIN TETRABUTYRATE'
RBF UniChem MedChemExpress HY-B0456
RBF UniChem 'Probes And Drugs' PD010207
RBF UniChem CCDC XARWUM
RBF UniChem SureChEMBL SCHEMBL7706
RBF UniChem 'PubChem TPHARMA' 14829102
RBF UniChem PubChem 493570
RBF UniChem Mcule MCULE-5620064525
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RBF N1 -0.820 2.699 0.420 ETKDGv3 1
RBF C2 -0.860 4.036 0.937 ETKDGv3 2
RBF O2 -1.958 4.647 1.009 ETKDGv3 3
RBF N3 0.346 4.675 1.369 ETKDGv3 4
RBF C4 1.580 3.961 1.283 ETKDGv3 5
RBF O4 2.656 4.501 1.657 ETKDGv3 6
RBF C4A 1.566 2.592 0.754 ETKDGv3 7
RBF N5 2.656 1.894 0.669 ETKDGv3 8
RBF C5A 2.676 0.549 0.169 ETKDGv3 9
RBF C6 3.971 -0.158 0.125 ETKDGv3 10
RBF C7 4.055 -1.418 -0.328 ETKDGv3 11
RBF C7M 5.387 -2.119 -0.352 ETKDGv3 12
RBF C8 2.814 -2.123 -0.758 ETKDGv3 13
RBF C8M 2.876 -3.544 -1.256 ETKDGv3 14
RBF C9 1.636 -1.472 -0.734 ETKDGv3 15
RBF C9A 1.540 -0.062 -0.249 ETKDGv3 16
RBF N10 0.277 0.664 -0.208 ETKDGv3 17
RBF C10 0.283 2.009 0.323 ETKDGv3 18
RBF "C1'" -1.005 0.069 -0.633 ETKDGv3 19
RBF "C2'" -1.768 -0.514 0.579 ETKDGv3 20
RBF "O2'" -0.959 -1.420 1.287 ETKDGv3 21
RBF "C3'" -3.144 -1.170 0.241 ETKDGv3 22
RBF "O3'" -2.988 -2.364 -0.487 ETKDGv3 23
RBF "C4'" -4.205 -0.250 -0.434 ETKDGv3 24
RBF "O4'" -3.847 0.056 -1.758 ETKDGv3 25
RBF "C5'" -4.456 1.061 0.330 ETKDGv3 26
RBF "O5'" -4.783 0.813 1.671 ETKDGv3 27
RBF HN3 0.324 5.650 1.744 ETKDGv3 28
RBF HC6 4.857 0.365 0.464 ETKDGv3 29
RBF HC71 5.541 -2.609 -1.336 ETKDGv3 30
RBF HC72 5.416 -2.889 0.448 ETKDGv3 31
RBF HC73 6.230 -1.413 -0.192 ETKDGv3 32
RBF HC81 3.365 -3.565 -2.252 ETKDGv3 33
RBF HC82 1.866 -3.998 -1.349 ETKDGv3 34
RBF HC83 3.459 -4.170 -0.549 ETKDGv3 35
RBF HC9 0.756 -2.001 -1.062 ETKDGv3 36
RBF HC11 -1.619 0.856 -1.114 ETKDGv3 37
RBF HC12 -0.857 -0.682 -1.429 ETKDGv3 38
RBF "HC2'" -1.966 0.327 1.276 ETKDGv3 39
RBF "HO2'" -0.793 -2.201 0.700 ETKDGv3 40
RBF "HC3'" -3.579 -1.469 1.221 ETKDGv3 41
RBF "HO3'" -2.591 -2.140 -1.366 ETKDGv3 42
RBF "HC4'" -5.174 -0.807 -0.434 ETKDGv3 43
RBF "HO4'" -4.210 -0.664 -2.337 ETKDGv3 44
RBF HC51 -3.557 1.710 0.292 ETKDGv3 45
RBF HC52 -5.280 1.625 -0.163 ETKDGv3 46
RBF "HO5'" -5.712 0.463 1.677 ETKDGv3 47
#