Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PRX    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2' C2' O C sing 1.43 N N
2 O2' H2' O H sing 0.97 N N
3 C2' C1' C C sing 1.54 N N
4 C2' C3' C C sing 1.55 N N
5 C2' H1 C H sing 1.09 N N
6 C1' O4' C O sing 1.44 N N
7 C1' N9 C N sing 1.47 N N
8 C1' H1' C H sing 1.09 N N
9 O4' C4' O C sing 1.44 N N
10 C4' C5' C C sing 1.53 N N
11 C4' C3' C C sing 1.54 N N
12 C4' H4' C H sing 1.09 N N
13 C5' O5' C O sing 1.43 N N
14 C5' H5'1 C H sing 1.09 N N
15 C5' H5'2 C H sing 1.09 N N
16 O5' P O P sing 1.61 N N
17 P O1P P O doub 1.48 N N
18 P O2P P O sing 1.61 N N
19 P O3P P O sing 1.61 N N
20 O2P H2P O H sing 0.97 N N
21 O3P C1P O C sing 1.43 N N
22 C1P C2P C C sing 1.53 N N
23 C1P H1P1 C H sing 1.09 N N
24 C1P H1P2 C H sing 1.09 N N
25 C2P C3P C C sing 1.53 N N
26 C2P H2P1 C H sing 1.09 N N
27 C2P H2P2 C H sing 1.09 N N
28 C3P H3P1 C H sing 1.09 N N
29 C3P H3P2 C H sing 1.09 N N
30 C3P H3P3 C H sing 1.09 N N
31 C3' O3' C O sing 1.43 N N
32 C3' H3' C H sing 1.09 N N
33 O3' H2 O H sing 0.97 N N
34 N9 C8 N C sing 1.36 N Y
35 N9 C4 N C sing 1.37 N Y
36 C8 N7 C N doub 1.3 N Y
37 C8 H8 C H sing 1.08 N N
38 N7 C5 N C sing 1.35 N Y
39 C5 C4 C C doub 1.4 N Y
40 C5 C6 C C sing 1.41 N Y
41 C4 N3 C N sing 1.33 N Y
42 N3 C2 N C doub 1.32 N Y
43 C2 N1 C N sing 1.32 N Y
44 C2 H3 C H sing 1.08 N N
45 N1 C6 N C doub 1.33 N Y
46 C6 N6 C N sing 1.38 N N
47 N6 HN61 N H sing 0.97 N N
48 N6 HN62 N H sing 0.97 N N