data_PRX
#
_chem_comp.id PRX
_chem_comp.name "ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H20 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ADENOSINE-5'-PROPYLPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-02-18
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 389.301
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PRX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PG4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PRX "O2'" "O2'" O 0 1 N N N N N N 75.834 125.742 85.435 2.714 2.974 0.506 "O2'" PRX 1
PRX "C2'" "C2'" C 0 1 N N R N N N 76.098 125.535 84.061 1.878 2.119 -0.276 "C2'" PRX 2
PRX "C1'" "C1'" C 0 1 N N R N N N 76.146 123.947 83.781 1.640 0.779 0.454 "C1'" PRX 3
PRX "O4'" "O4'" O 0 1 N N N N N N 74.805 123.556 83.382 0.268 0.437 0.159 "O4'" PRX 4
PRX "C4'" "C4'" C 0 1 N N R N N N 73.932 124.744 83.213 -0.461 1.681 0.244 "C4'" PRX 5
PRX "C5'" "C5'" C 0 1 N N N N N N 73.061 124.590 81.950 -1.781 1.577 -0.522 "C5'" PRX 6
PRX "O5'" "O5'" O 0 1 N N N N N N 72.096 123.543 82.256 -2.638 0.637 0.130 "O5'" PRX 7
PRX P P P 0 1 N N N N N N 71.026 123.099 81.110 -4.114 0.278 -0.404 P PRX 8
PRX O1P O1P O 0 1 N N N N N N 70.200 124.309 80.952 -4.034 -0.162 -1.815 O1P PRX 9
PRX O2P O2P O 0 1 N N N N N N 70.282 121.943 81.686 -5.054 1.581 -0.301 O2P PRX 10
PRX O3P O3P O 0 1 N N N N N N 71.836 122.742 79.870 -4.736 -0.905 0.493 O3P PRX 11
PRX C1P C1P C 0 1 N N N N N N 72.701 121.564 79.750 -5.993 -1.521 0.205 C1P PRX 12
PRX C2P C2P C 0 1 N N N N N N 73.562 121.492 78.507 -6.282 -2.602 1.249 C2P PRX 13
PRX C3P C3P C 0 1 N N N N N N 74.540 122.638 78.457 -7.628 -3.260 0.942 C3P PRX 14
PRX "C3'" "C3'" C 0 1 N N S N N N 74.932 126.064 83.102 0.464 2.726 -0.417 "C3'" PRX 15
PRX "O3'" "O3'" O 0 1 N N N N N N 74.121 127.230 83.595 0.384 3.974 0.273 "O3'" PRX 16
PRX N9 N9 N 0 1 Y N N N N N 77.094 123.637 82.674 2.545 -0.251 -0.063 N9 PRX 17
PRX C8 C8 C 0 1 Y N N N N N 76.802 123.237 81.362 2.260 -1.159 -1.039 C8 PRX 18
PRX N7 N7 N 0 1 Y N N N N N 77.843 123.006 80.536 3.292 -1.924 -1.250 N7 PRX 19
PRX C5 C5 C 0 1 Y N N N N N 78.884 123.289 81.413 4.301 -1.556 -0.424 C5 PRX 20
PRX C4 C4 C 0 1 Y N N N N N 78.450 123.675 82.713 3.836 -0.475 0.343 C4 PRX 21
PRX N3 N3 N 0 1 Y N N N N N 79.208 124.016 83.788 4.649 0.080 1.236 N3 PRX 22
PRX C2 C2 C 0 1 Y N N N N N 80.530 123.956 83.520 5.874 -0.372 1.401 C2 PRX 23
PRX N1 N1 N 0 1 Y N N N N N 81.065 123.602 82.336 6.357 -1.383 0.701 N1 PRX 24
PRX C6 C6 C 0 1 Y N N N N N 80.294 123.251 81.226 5.615 -2.006 -0.209 C6 PRX 25
PRX N6 N6 N 0 1 N N N N N N 80.795 122.884 79.998 6.130 -3.063 -0.938 N6 PRX 26
PRX "H2'" "H2'" H 0 1 N N N N N N 75.803 126.674 85.615 2.896 3.830 0.095 "H2'" PRX 27
PRX H1 H1 H 0 1 N N N N N N 77.054 125.984 83.754 2.322 1.946 -1.257 H1 PRX 28
PRX "H1'" "H1'" H 0 1 N N N N N N 76.450 123.432 84.704 1.778 0.902 1.528 "H1'" PRX 29
PRX "H4'" "H4'" H 0 1 N N N N N N 73.286 124.875 84.094 -0.647 1.941 1.286 "H4'" PRX 30
PRX "H5'1" "H5'1" H 0 0 N N N N N N 72.543 125.534 81.725 -2.265 2.554 -0.546 "H5'1" PRX 31
PRX "H5'2" "H5'2" H 0 0 N N N N N N 73.682 124.299 81.090 -1.585 1.244 -1.541 "H5'2" PRX 32
PRX H2P H2P H 0 1 N N N N N N 69.382 122.197 81.854 -5.152 1.925 0.598 H2P PRX 33
PRX H1P1 H1P1 H 0 0 N N N N N N 73.370 121.548 80.623 -6.781 -0.768 0.234 H1P1 PRX 34
PRX H1P2 H1P2 H 0 0 N N N N N N 72.058 120.672 79.765 -5.958 -1.973 -0.786 H1P2 PRX 35
PRX H2P1 H2P1 H 0 0 N N N N N N 74.120 120.544 78.511 -5.494 -3.354 1.220 H2P1 PRX 36
PRX H2P2 H2P2 H 0 0 N N N N N N 72.915 121.533 77.619 -6.317 -2.149 2.240 H2P2 PRX 37
PRX H3P1 H3P1 H 0 0 N N N N N N 75.151 122.560 77.545 -7.594 -3.713 -0.050 H3P1 PRX 38
PRX H3P2 H3P2 H 0 0 N N N N N N 73.989 123.590 78.449 -7.834 -4.030 1.685 H3P2 PRX 39
PRX H3P3 H3P3 H 0 0 N N N N N N 75.194 122.601 79.341 -8.416 -2.508 0.970 H3P3 PRX 40
PRX "H3'" "H3'" H 0 1 N N N N N N 75.288 126.196 82.070 0.206 2.853 -1.469 "H3'" PRX 41
PRX H2 H2 H 0 1 N N N N N N 73.463 127.455 82.948 0.989 4.650 -0.063 H2 PRX 42
PRX H8 H8 H 0 1 N N N N N N 75.783 123.118 81.026 1.317 -1.233 -1.560 H8 PRX 43
PRX H3 H3 H 0 1 N N N N N N 81.212 124.212 84.318 6.509 0.102 2.135 H3 PRX 44
PRX HN61 HN61 H 0 0 N N N N N N 81.794 122.908 80.025 5.583 -3.503 -1.607 HN61 PRX 45
PRX HN62 HN62 H 0 0 N N N N N N 80.490 121.958 79.777 7.039 -3.364 -0.781 HN62 PRX 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRX "O2'" "C2'" SING N N 1
PRX "O2'" "H2'" SING N N 2
PRX "C2'" "C1'" SING N N 3
PRX "C2'" "C3'" SING N N 4
PRX "C2'" H1 SING N N 5
PRX "C1'" "O4'" SING N N 6
PRX "C1'" N9 SING N N 7
PRX "C1'" "H1'" SING N N 8
PRX "O4'" "C4'" SING N N 9
PRX "C4'" "C5'" SING N N 10
PRX "C4'" "C3'" SING N N 11
PRX "C4'" "H4'" SING N N 12
PRX "C5'" "O5'" SING N N 13
PRX "C5'" "H5'1" SING N N 14
PRX "C5'" "H5'2" SING N N 15
PRX "O5'" P SING N N 16
PRX P O1P DOUB N N 17
PRX P O2P SING N N 18
PRX P O3P SING N N 19
PRX O2P H2P SING N N 20
PRX O3P C1P SING N N 21
PRX C1P C2P SING N N 22
PRX C1P H1P1 SING N N 23
PRX C1P H1P2 SING N N 24
PRX C2P C3P SING N N 25
PRX C2P H2P1 SING N N 26
PRX C2P H2P2 SING N N 27
PRX C3P H3P1 SING N N 28
PRX C3P H3P2 SING N N 29
PRX C3P H3P3 SING N N 30
PRX "C3'" "O3'" SING N N 31
PRX "C3'" "H3'" SING N N 32
PRX "O3'" H2 SING N N 33
PRX N9 C8 SING Y N 34
PRX N9 C4 SING Y N 35
PRX C8 N7 DOUB Y N 36
PRX C8 H8 SING N N 37
PRX N7 C5 SING Y N 38
PRX C5 C4 DOUB Y N 39
PRX C5 C6 SING Y N 40
PRX C4 N3 SING Y N 41
PRX N3 C2 DOUB Y N 42
PRX C2 N1 SING Y N 43
PRX C2 H3 SING N N 44
PRX N1 C6 DOUB Y N 45
PRX C6 N6 SING N N 46
PRX N6 HN61 SING N N 47
PRX N6 HN62 SING N N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRX SMILES ACDLabs 12.01 OC1C(OC(COP(=O)(O)OCCC)C1O)n2cnc3c2ncnc3N
PRX InChI InChI 1.03 InChI=1S/C13H20N5O7P/c1-2-3-23-26(21,22)24-4-7-9(19)10(20)13(25-7)18-6-17-8-11(14)15-5-16-12(8)18/h5-7,9-10,13,19-20H,2-4H2,1H3,(H,21,22)(H2,14,15,16)/t7-,9-,10-,13-/m1/s1
PRX InChIKey InChI 1.03 XAMXMSZRQHPMRX-QYVSTXNMSA-N
PRX SMILES_CANONICAL CACTVS 3.385 CCCO[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
PRX SMILES CACTVS 3.385 CCCO[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
PRX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCO[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O
PRX SMILES "OpenEye OEToolkits" 1.7.6 CCCOP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PRX "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-hydroxy(propoxy)phosphoryl]adenosine"
PRX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl propyl hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PRX 'Create component' 2003-02-18 RCSB
PRX 'Modify descriptor' 2011-06-04 RCSB
PRX 'Other modification' 2011-06-04 RCSB
PRX 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PRX
_pdbx_chem_comp_synonyms.name "ADENOSINE-5'-PROPYLPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id PRX
_pdbe_chem_comp_drugbank_details.drugbank_id DB03230
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "Adenosine-5'-Propylphosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
PRX "ADENOSINE-5'-PROPYLPHOSPHATE" wwPDB ?
PRX "Adenosine-5'-Propylphosphate" DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PRX
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03230
_pdbe_chem_comp_drugbank_classification.parent 'Purine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine ribonucleoside monophosphates. These are nucleotides consisting of a purine base linked to a ribose to which one monophosphate group is attached.'
#
_pdbe_chem_comp_drugbank_targets.comp_id PRX
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03230
_pdbe_chem_comp_drugbank_targets.name 'Acetyl-coenzyme A synthetase'
_pdbe_chem_comp_drugbank_targets.organism 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)'
_pdbe_chem_comp_drugbank_targets.uniprot_id Q8ZKF6
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PRX "O2'" O 10.123 -3.112 1
PRX "C2'" C 8.911 -2.228 2
PRX "C1'" C 7.483 -2.689 3
PRX "O4'" O 6.604 -1.474 4
PRX "C4'" C 7.487 -0.262 5
PRX "C5'" C 7.027 1.166 6
PRX "O5'" O 8.032 2.279 7
PRX P P 7.571 3.706 8
PRX O1P O 8.998 4.167 9
PRX O2P O 6.144 3.245 10
PRX O3P O 7.110 5.133 11
PRX C1P C 8.116 6.246 12
PRX C2P C 7.655 7.674 13
PRX C3P C 8.660 8.787 14
PRX "C3'" C 8.913 -0.728 15
PRX "O3'" O 10.129 0.152 16
PRX N9 N 7.018 -4.115 17
PRX C8 C 7.893 -5.322 18
PRX N7 N 7.018 -6.529 19
PRX C5 C 5.598 -6.072 20
PRX C4 C 5.598 -4.572 21
PRX N3 N 4.299 -3.822 22
PRX C2 C 3.000 -4.572 23
PRX N1 N 3.000 -6.072 24
PRX C6 C 4.299 -6.822 25
PRX N6 N 4.299 -8.322 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PRX "C2'" "O2'" SINGLE BEGINWEDGE 1
PRX "C2'" "C1'" SINGLE NONE 2
PRX "C2'" "C3'" SINGLE NONE 3
PRX "C1'" "O4'" SINGLE NONE 4
PRX "C1'" N9 SINGLE BEGINDASH 5
PRX "O4'" "C4'" SINGLE NONE 6
PRX "C4'" "C5'" SINGLE BEGINDASH 7
PRX "C4'" "C3'" SINGLE NONE 8
PRX "C5'" "O5'" SINGLE NONE 9
PRX "O5'" P SINGLE NONE 10
PRX P O1P DOUBLE NONE 11
PRX P O2P SINGLE BEGINWEDGE 12
PRX P O3P SINGLE NONE 13
PRX O3P C1P SINGLE NONE 14
PRX C1P C2P SINGLE NONE 15
PRX C2P C3P SINGLE NONE 16
PRX "C3'" "O3'" SINGLE BEGINWEDGE 17
PRX N9 C8 SINGLE NONE 18
PRX N9 C4 SINGLE NONE 19
PRX C8 N7 DOUBLE NONE 20
PRX N7 C5 SINGLE NONE 21
PRX C5 C4 DOUBLE NONE 22
PRX C5 C6 SINGLE NONE 23
PRX C4 N3 SINGLE NONE 24
PRX N3 C2 DOUBLE NONE 25
PRX C2 N1 SINGLE NONE 26
PRX N1 C6 DOUBLE NONE 27
PRX C6 N6 SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PRX MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
PRX adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
PRX imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
PRX phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
PRX purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
PRX pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
PRX ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PRX "C2'" S1 1
PRX "C1'" S1 1
PRX "O4'" S1 1
PRX "C4'" S1 1
PRX "C3'" S1 1
PRX N9 S1 1
PRX C8 S1 1
PRX N7 S1 1
PRX C5 S1 1
PRX C4 S1 1
PRX N3 S1 1
PRX C2 S1 1
PRX N1 S1 1
PRX C6 S1 1
PRX N1 F1 1
PRX C6 F1 1
PRX C5 F1 1
PRX C4 F1 1
PRX N3 F1 1
PRX C2 F1 1
PRX N9 F1 1
PRX C8 F1 1
PRX N7 F1 1
PRX N6 F1 1
PRX C5 F2 1
PRX C4 F2 1
PRX N9 F2 1
PRX C8 F2 1
PRX N7 F2 1
PRX "O5'" F3 1
PRX P F3 1
PRX O1P F3 1
PRX O2P F3 1
PRX O3P F3 1
PRX N7 F4 1
PRX C8 F4 1
PRX N9 F4 1
PRX C4 F4 1
PRX C5 F4 1
PRX C6 F4 1
PRX N1 F4 1
PRX C2 F4 1
PRX N3 F4 1
PRX C5 F5 1
PRX C4 F5 1
PRX N3 F5 1
PRX C2 F5 1
PRX N1 F5 1
PRX C6 F5 1
PRX "C2'" F6 1
PRX "C3'" F6 1
PRX "C4'" F6 1
PRX "O4'" F6 1
PRX "C1'" F6 1
PRX "C5'" F6 1
PRX "O5'" F6 1
PRX "O3'" F6 1
PRX "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PRX
_pdbe_chem_comp_rdkit_properties.exactmw 389.110
_pdbe_chem_comp_rdkit_properties.amw 389.305
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.615
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 176.193
_pdbe_chem_comp_rdkit_properties.tpsa 175.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.238
_pdbe_chem_comp_rdkit_properties.CrippenMR 84.649
_pdbe_chem_comp_rdkit_properties.chi0v 12.935
_pdbe_chem_comp_rdkit_properties.chi1v 7.652
_pdbe_chem_comp_rdkit_properties.chi2v 3.306
_pdbe_chem_comp_rdkit_properties.chi3v 3.306
_pdbe_chem_comp_rdkit_properties.chi4v 2.059
_pdbe_chem_comp_rdkit_properties.chi0n 32.041
_pdbe_chem_comp_rdkit_properties.chi1n 15.810
_pdbe_chem_comp_rdkit_properties.chi2n 2.676
_pdbe_chem_comp_rdkit_properties.chi3n 2.676
_pdbe_chem_comp_rdkit_properties.chi4n 1.669
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.660
_pdbe_chem_comp_rdkit_properties.kappa1 6.175
_pdbe_chem_comp_rdkit_properties.kappa2 7.527
_pdbe_chem_comp_rdkit_properties.kappa3 3.714
_pdbe_chem_comp_rdkit_properties.Phi 1.787
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PRX UniChem DrugBank DB03230
PRX UniChem ZINC ZINC000015894146
PRX UniChem SureChEMBL SCHEMBL4326222
PRX UniChem Nikkaji J1.463.974H
PRX UniChem BRENDA 102401
PRX UniChem BRENDA 123209
PRX UniChem BRENDA 227767
PRX UniChem BRENDA 56254
PRX UniChem 'Probes And Drugs' PD060096
PRX UniChem PubChem 447832
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PRX "O2'" 2.614 3.538 -0.528 ETKDGv3 1
PRX "C2'" 1.833 2.432 -0.157 ETKDGv3 2
PRX "C1'" 2.197 1.950 1.236 ETKDGv3 3
PRX "O4'" 1.059 1.349 1.810 ETKDGv3 4
PRX "C4'" -0.077 1.835 1.120 ETKDGv3 5
PRX "C5'" -0.879 0.652 0.565 ETKDGv3 6
PRX "O5'" -1.223 -0.212 1.623 ETKDGv3 7
PRX P -2.189 -1.472 1.001 ETKDGv3 8
PRX O1P -2.563 -2.390 2.143 ETKDGv3 9
PRX O2P -1.316 -2.356 -0.151 ETKDGv3 10
PRX O3P -3.603 -0.814 0.305 ETKDGv3 11
PRX C1P -4.396 -1.872 -0.183 ETKDGv3 12
PRX C2P -5.666 -1.307 -0.820 ETKDGv3 13
PRX C3P -6.554 -0.605 0.206 ETKDGv3 14
PRX "C3'" 0.375 2.781 -0.002 ETKDGv3 15
PRX "O3'" 0.231 4.119 0.406 ETKDGv3 16
PRX N9 3.303 0.996 1.193 ETKDGv3 17
PRX C8 4.683 1.322 0.971 ETKDGv3 18
PRX N7 5.389 0.333 0.502 ETKDGv3 19
PRX C5 4.454 -0.732 0.378 ETKDGv3 20
PRX C4 3.264 -0.350 0.754 ETKDGv3 21
PRX N3 2.109 -1.179 0.582 ETKDGv3 22
PRX C2 2.264 -2.363 0.047 ETKDGv3 23
PRX N1 3.576 -2.812 -0.377 ETKDGv3 24
PRX C6 4.631 -2.054 -0.235 ETKDGv3 25
PRX N6 5.912 -2.505 -0.672 ETKDGv3 26
PRX "H2'" 2.428 3.701 -1.490 ETKDGv3 27
PRX H1 1.947 1.603 -0.895 ETKDGv3 28
PRX "H1'" 2.491 2.815 1.874 ETKDGv3 29
PRX "H4'" -0.725 2.379 1.843 ETKDGv3 30
PRX "H5'1" -1.792 1.055 0.070 ETKDGv3 31
PRX "H5'2" -0.251 0.119 -0.184 ETKDGv3 32
PRX H2P -1.406 -1.844 -0.994 ETKDGv3 33
PRX H1P1 -4.687 -2.567 0.637 ETKDGv3 34
PRX H1P2 -3.850 -2.441 -0.968 ETKDGv3 35
PRX H2P1 -5.391 -0.589 -1.623 ETKDGv3 36
PRX H2P2 -6.240 -2.138 -1.282 ETKDGv3 37
PRX H3P1 -6.849 -1.312 1.010 ETKDGv3 38
PRX H3P2 -7.473 -0.232 -0.293 ETKDGv3 39
PRX H3P3 -6.020 0.260 0.655 ETKDGv3 40
PRX "H3'" -0.165 2.615 -0.964 ETKDGv3 41
PRX H2 -0.730 4.344 0.299 ETKDGv3 42
PRX H8 5.100 2.304 1.147 ETKDGv3 43
PRX H3 1.407 -3.007 -0.089 ETKDGv3 44
PRX HN61 6.020 -3.448 -1.109 ETKDGv3 45
PRX HN62 6.757 -1.901 -0.559 ETKDGv3 46
#