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PDBeChem : Atoms of Molecule
Molecule : PRX
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 46
| Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
| 1 |
O2' |
O |
O2' |
N |
N |
N |
0 |
2.714 |
2.974 |
0.506 |
| 2 |
C2' |
C |
C2' |
R |
N |
N |
0 |
1.878 |
2.119 |
-0.276 |
| 3 |
C1' |
C |
C1' |
R |
N |
N |
0 |
1.64 |
0.779 |
0.454 |
| 4 |
O4' |
O |
O4' |
N |
N |
N |
0 |
0.268 |
0.437 |
0.159 |
| 5 |
C4' |
C |
C4' |
R |
N |
N |
0 |
-0.461 |
1.681 |
0.244 |
| 6 |
C5' |
C |
C5' |
N |
N |
N |
0 |
-1.781 |
1.577 |
-0.522 |
| 7 |
O5' |
O |
O5' |
N |
N |
N |
0 |
-2.638 |
0.637 |
0.13 |
| 8 |
P |
P |
P |
N |
N |
N |
0 |
-4.114 |
0.278 |
-0.404 |
| 9 |
O1P |
O |
O1P |
N |
N |
N |
0 |
-4.034 |
-0.162 |
-1.815 |
| 10 |
O2P |
O |
O2P |
N |
N |
N |
0 |
-5.054 |
1.581 |
-0.301 |
| 11 |
O3P |
O |
O3P |
N |
N |
N |
0 |
-4.736 |
-0.905 |
0.493 |
| 12 |
C1P |
C |
C1P |
N |
N |
N |
0 |
-5.993 |
-1.521 |
0.205 |
| 13 |
C2P |
C |
C2P |
N |
N |
N |
0 |
-6.282 |
-2.602 |
1.249 |
| 14 |
C3P |
C |
C3P |
N |
N |
N |
0 |
-7.628 |
-3.26 |
0.942 |
| 15 |
C3' |
C |
C3' |
S |
N |
N |
0 |
0.464 |
2.726 |
-0.417 |
| 16 |
O3' |
O |
O3' |
N |
N |
N |
0 |
0.384 |
3.974 |
0.273 |
| 17 |
N9 |
N |
N9 |
N |
Y |
N |
0 |
2.545 |
-0.251 |
-0.063 |
| 18 |
C8 |
C |
C8 |
N |
Y |
N |
0 |
2.26 |
-1.159 |
-1.039 |
| 19 |
N7 |
N |
N7 |
N |
Y |
N |
0 |
3.292 |
-1.924 |
-1.25 |
| 20 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
4.301 |
-1.556 |
-0.424 |
| 21 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
3.836 |
-0.475 |
0.343 |
| 22 |
N3 |
N |
N3 |
N |
Y |
N |
0 |
4.649 |
0.08 |
1.236 |
| 23 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
5.874 |
-0.372 |
1.401 |
| 24 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
6.357 |
-1.383 |
0.701 |
| 25 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
5.615 |
-2.006 |
-0.209 |
| 26 |
N6 |
N |
N6 |
N |
N |
N |
0 |
6.13 |
-3.063 |
-0.938 |
| 27 |
H2' |
H |
H2' |
N |
N |
N |
0 |
2.896 |
3.83 |
0.095 |
| 28 |
H1 |
H |
H1 |
N |
N |
N |
0 |
2.322 |
1.946 |
-1.257 |
| 29 |
H1' |
H |
H1' |
N |
N |
N |
0 |
1.778 |
0.902 |
1.528 |
| 30 |
H4' |
H |
H4' |
N |
N |
N |
0 |
-0.647 |
1.941 |
1.286 |
| 31 |
H5'1 |
H |
H5'1 |
N |
N |
N |
0 |
-2.265 |
2.554 |
-0.546 |
| 32 |
H5'2 |
H |
H5'2 |
N |
N |
N |
0 |
-1.585 |
1.244 |
-1.541 |
| 33 |
H2P |
H |
H2P |
N |
N |
N |
0 |
-5.152 |
1.925 |
0.598 |
| 34 |
H1P1 |
H |
H1P1 |
N |
N |
N |
0 |
-6.781 |
-0.768 |
0.234 |
| 35 |
H1P2 |
H |
H1P2 |
N |
N |
N |
0 |
-5.958 |
-1.973 |
-0.786 |
| 36 |
H2P1 |
H |
H2P1 |
N |
N |
N |
0 |
-5.494 |
-3.354 |
1.22 |
| 37 |
H2P2 |
H |
H2P2 |
N |
N |
N |
0 |
-6.317 |
-2.149 |
2.24 |
| 38 |
H3P1 |
H |
H3P1 |
N |
N |
N |
0 |
-7.594 |
-3.713 |
-0.05 |
| 39 |
H3P2 |
H |
H3P2 |
N |
N |
N |
0 |
-7.834 |
-4.03 |
1.685 |
| 40 |
H3P3 |
H |
H3P3 |
N |
N |
N |
0 |
-8.416 |
-2.508 |
0.97 |
| 41 |
H3' |
H |
H3' |
N |
N |
N |
0 |
0.206 |
2.853 |
-1.469 |
| 42 |
H2 |
H |
H2 |
N |
N |
N |
0 |
0.989 |
4.65 |
-0.063 |
| 43 |
H8 |
H |
H8 |
N |
N |
N |
0 |
1.317 |
-1.233 |
-1.56 |
| 44 |
H3 |
H |
H3 |
N |
N |
N |
0 |
6.509 |
0.102 |
2.135 |
| 45 |
HN61 |
H |
HN61 |
N |
N |
N |
0 |
5.583 |
-3.503 |
-1.607 |
| 46 |
HN62 |
H |
HN62 |
N |
N |
N |
0 |
7.039 |
-3.364 |
-0.781 |
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