Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PRX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2' O O2' N N N 0 2.714 2.974 0.506
2 C2' C C2' R N N 0 1.878 2.119 -0.276
3 C1' C C1' R N N 0 1.64 0.779 0.454
4 O4' O O4' N N N 0 0.268 0.437 0.159
5 C4' C C4' R N N 0 -0.461 1.681 0.244
6 C5' C C5' N N N 0 -1.781 1.577 -0.522
7 O5' O O5' N N N 0 -2.638 0.637 0.13
8 P P P N N N 0 -4.114 0.278 -0.404
9 O1P O O1P N N N 0 -4.034 -0.162 -1.815
10 O2P O O2P N N N 0 -5.054 1.581 -0.301
11 O3P O O3P N N N 0 -4.736 -0.905 0.493
12 C1P C C1P N N N 0 -5.993 -1.521 0.205
13 C2P C C2P N N N 0 -6.282 -2.602 1.249
14 C3P C C3P N N N 0 -7.628 -3.26 0.942
15 C3' C C3' S N N 0 0.464 2.726 -0.417
16 O3' O O3' N N N 0 0.384 3.974 0.273
17 N9 N N9 N Y N 0 2.545 -0.251 -0.063
18 C8 C C8 N Y N 0 2.26 -1.159 -1.039
19 N7 N N7 N Y N 0 3.292 -1.924 -1.25
20 C5 C C5 N Y N 0 4.301 -1.556 -0.424
21 C4 C C4 N Y N 0 3.836 -0.475 0.343
22 N3 N N3 N Y N 0 4.649 0.08 1.236
23 C2 C C2 N Y N 0 5.874 -0.372 1.401
24 N1 N N1 N Y N 0 6.357 -1.383 0.701
25 C6 C C6 N Y N 0 5.615 -2.006 -0.209
26 N6 N N6 N N N 0 6.13 -3.063 -0.938
27 H2' H H2' N N N 0 2.896 3.83 0.095
28 H1 H H1 N N N 0 2.322 1.946 -1.257
29 H1' H H1' N N N 0 1.778 0.902 1.528
30 H4' H H4' N N N 0 -0.647 1.941 1.286
31 H5'1 H H5'1 N N N 0 -2.265 2.554 -0.546
32 H5'2 H H5'2 N N N 0 -1.585 1.244 -1.541
33 H2P H H2P N N N 0 -5.152 1.925 0.598
34 H1P1 H H1P1 N N N 0 -6.781 -0.768 0.234
35 H1P2 H H1P2 N N N 0 -5.958 -1.973 -0.786
36 H2P1 H H2P1 N N N 0 -5.494 -3.354 1.22
37 H2P2 H H2P2 N N N 0 -6.317 -2.149 2.24
38 H3P1 H H3P1 N N N 0 -7.594 -3.713 -0.05
39 H3P2 H H3P2 N N N 0 -7.834 -4.03 1.685
40 H3P3 H H3P3 N N N 0 -8.416 -2.508 0.97
41 H3' H H3' N N N 0 0.206 2.853 -1.469
42 H2 H H2 N N N 0 0.989 4.65 -0.063
43 H8 H H8 N N N 0 1.317 -1.233 -1.56
44 H3 H H3 N N N 0 6.509 0.102 2.135
45 HN61 H HN61 N N N 0 5.583 -3.503 -1.607
46 HN62 H HN62 N N N 0 7.039 -3.364 -0.781