Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PRP    

Bonds between two atoms of the molecule

Total Number of Bonds: 35


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.54 N N
2 C1 O1 C O sing 1.43 N N
3 C1 O4 C O sing 1.44 N N
4 C1 H1 C H sing 1.09 N N
5 C2 C3 C C sing 1.54 N N
6 C2 O2 C O sing 1.43 N N
7 C2 H2 C H sing 1.09 N N
8 C3 C4 C C sing 1.54 N N
9 C3 O3 C O sing 1.43 N N
10 C3 H3 C H sing 1.09 N N
11 C4 C5 C C sing 1.53 N N
12 C4 O4 C O sing 1.45 N N
13 C4 H4 C H sing 1.09 N N
14 C5 O5 C O sing 1.43 N N
15 C5 H51 C H sing 1.09 N N
16 C5 H52 C H sing 1.09 N N
17 O1 PA O P sing 1.61 N N
18 O2 HO2 O H sing 0.97 N N
19 O3 HO3 O H sing 0.97 N N
20 O5 P O P sing 1.61 N N
21 P O1P P O doub 1.48 N N
22 P O2P P O sing 1.61 N N
23 P O3P P O sing 1.61 N N
24 O2P HOP2 O H sing 0.97 N N
25 O3P HOP3 O H sing 0.97 N N
26 PA O1A P O doub 1.48 N N
27 PA O2A P O sing 1.61 N N
28 PA O3A P O sing 1.61 N N
29 O2A HOA2 O H sing 0.97 N N
30 O3A PB O P sing 1.61 N N
31 PB O1B P O doub 1.48 N N
32 PB O2B P O sing 1.61 N N
33 PB O3B P O sing 1.61 N N
34 O2B HOB2 O H sing 0.97 N N
35 O3B HOB3 O H sing 0.97 N N