data_PRP
#
_chem_comp.id PRP
_chem_comp.name 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose
_chem_comp.type D-saccharide
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C5 H13 O14 P3"
_chem_comp.mon_nstd_parent_comp_id RIB
_chem_comp.pdbx_synonyms
;ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose;
1-O-pyrophosphono-5-O-phosphono-D-ribose; 1-O-pyrophosphono-5-O-phosphono-ribose
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 390.070
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PRP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1TC2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 PRP "ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID" PDB ?
2 PRP 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose PDB ?
3 PRP 1-O-pyrophosphono-5-O-phosphono-D-ribose PDB ?
4 PRP 1-O-pyrophosphono-5-O-phosphono-ribose PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PRP C1 C1 C 0 1 N N R N N N 41.016 41.804 51.870 1.414 -0.754 0.218 C1 PRP 1
PRP C2 C2 C 0 1 N N R N N N 39.675 42.493 51.935 2.820 -0.609 -0.404 C2 PRP 2
PRP C3 C3 C 0 1 N N S N N N 39.972 43.609 52.894 2.562 0.095 -1.754 C3 PRP 3
PRP C4 C4 C 0 1 N N R N N N 40.929 42.976 53.839 1.030 0.291 -1.792 C4 PRP 4
PRP C5 C5 C 0 1 N N N N N N 40.085 42.509 55.009 0.494 0.087 -3.210 C5 PRP 5
PRP O1 O1 O 0 1 N N N N N N 41.983 42.485 51.008 1.147 0.334 1.104 O1 PRP 6
PRP O2 O2 O 0 1 N N N N N N 39.296 43.083 50.680 3.658 0.195 0.428 O2 PRP 7
PRP O3 O3 O 0 1 N N N N N N 40.666 44.709 52.333 3.230 1.357 -1.796 O3 PRP 8
PRP O4 O4 O 0 1 N N N N N N 41.523 41.852 53.148 0.508 -0.725 -0.905 O4 PRP 9
PRP O5 O5 O 0 1 N N N N N N 40.848 41.708 55.877 -0.929 0.203 -3.202 O5 PRP 10
PRP P P P 0 1 N N N N N N 41.368 42.202 57.322 -1.423 -0.021 -4.718 P PRP 11
PRP O1P O1P O 0 1 N N N N N N 40.251 42.900 57.990 -1.007 -1.364 -5.179 O1P PRP 12
PRP O2P O2P O 0 1 N N N N N N 42.548 43.095 57.149 -3.027 0.096 -4.784 O2P PRP 13
PRP O3P O3P O 0 1 N N N N N N 41.706 40.844 57.853 -0.764 1.099 -5.668 O3P PRP 14
PRP PA PA P 0 1 N N R N N N 43.232 41.813 50.185 0.157 -0.225 2.244 PA PRP 15
PRP O1A O1A O 0 1 N N N N N N 44.385 42.007 51.133 -1.092 -0.711 1.617 O1A PRP 16
PRP O2A O2A O 0 1 N N N N N N 42.894 40.398 49.928 0.871 -1.437 3.027 O2A PRP 17
PRP O3A O3A O 0 1 N N N N N N 43.293 42.678 48.941 -0.186 0.955 3.283 O3A PRP 18
PRP PB PB P 0 1 N N N N N N 42.315 42.779 47.781 -1.175 0.329 4.389 PB PRP 19
PRP O1B O1B O 0 1 N N N N N N 41.694 41.508 47.499 -0.498 -0.793 5.075 O1B PRP 20
PRP O2B O2B O 0 1 N N N N N N 43.008 43.240 46.591 -1.562 1.461 5.465 O2B PRP 21
PRP O3B O3B O 0 1 N N N N N N 41.257 43.786 48.012 -2.512 -0.208 3.671 O3B PRP 22
PRP H1 H1 H 0 1 N N N N N N 40.865 40.778 51.459 1.330 -1.703 0.748 H1 PRP 23
PRP H2 H2 H 0 1 N N N N N N 38.851 41.794 52.212 3.270 -1.589 -0.564 H2 PRP 24
PRP H3 H3 H 0 1 N N N N N N 39.015 44.010 53.302 2.886 -0.535 -2.582 H3 PRP 25
PRP H4 H4 H 0 1 N N N N N N 41.741 43.653 54.190 0.767 1.284 -1.426 H4 PRP 26
PRP H51 H51 H 0 1 N N N N N N 39.608 43.363 55.544 0.916 0.845 -3.870 H51 PRP 27
PRP H52 H52 H 0 1 N N N N N N 39.158 41.988 54.670 0.776 -0.902 -3.566 H52 PRP 28
PRP HO2 HO2 H 0 1 N Y N N N N 38.451 43.516 50.720 3.785 -0.292 1.253 HO2 PRP 29
PRP HO3 HO3 H 0 1 N Y N N N N 40.854 45.415 52.939 4.177 1.174 -1.740 HO3 PRP 30
PRP HOP2 HOP2 H 0 0 N N N N N N 42.854 43.385 57.999 -3.280 -0.044 -5.706 HOP2 PRP 31
PRP HOP3 HOP3 H 0 0 N N N N N N 42.012 41.134 58.703 -1.059 1.957 -5.335 HOP3 PRP 32
PRP HOA2 HOA2 H 0 0 N N N N N N 43.617 40.008 49.451 1.679 -1.079 3.420 HOA2 PRP 33
PRP HOB2 HOB2 H 0 0 N N N N N N 42.397 43.303 45.866 -2.153 1.046 6.108 HOB2 PRP 34
PRP HOB3 HOB3 H 0 0 N N N N N N 40.646 43.849 47.287 -2.921 0.552 3.236 HOB3 PRP 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRP C1 C2 SING N N 1
PRP C1 O1 SING N N 2
PRP C1 O4 SING N N 3
PRP C1 H1 SING N N 4
PRP C2 C3 SING N N 5
PRP C2 O2 SING N N 6
PRP C2 H2 SING N N 7
PRP C3 C4 SING N N 8
PRP C3 O3 SING N N 9
PRP C3 H3 SING N N 10
PRP C4 C5 SING N N 11
PRP C4 O4 SING N N 12
PRP C4 H4 SING N N 13
PRP C5 O5 SING N N 14
PRP C5 H51 SING N N 15
PRP C5 H52 SING N N 16
PRP O1 PA SING N N 17
PRP O2 HO2 SING N N 18
PRP O3 HO3 SING N N 19
PRP O5 P SING N N 20
PRP P O1P DOUB N N 21
PRP P O2P SING N N 22
PRP P O3P SING N N 23
PRP O2P HOP2 SING N N 24
PRP O3P HOP3 SING N N 25
PRP PA O1A DOUB N N 26
PRP PA O2A SING N N 27
PRP PA O3A SING N N 28
PRP O2A HOA2 SING N N 29
PRP O3A PB SING N N 30
PRP PB O1B DOUB N N 31
PRP PB O2B SING N N 32
PRP PB O3B SING N N 33
PRP O2B HOB2 SING N N 34
PRP O3B HOB3 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRP SMILES ACDLabs 10.04 O=P(OC1OC(C(O)C1O)COP(=O)(O)O)(O)OP(=O)(O)O
PRP SMILES_CANONICAL CACTVS 3.341 O[C@H]1[C@@H](O)[C@H](O[C@@H]1CO[P](O)(O)=O)O[P@](O)(=O)O[P](O)(O)=O
PRP SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)O[P](O)(=O)O[P](O)(O)=O
PRP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]1[C@H]([C@H]([C@H](O1)O[P@@](=O)(O)OP(=O)(O)O)O)O)OP(=O)(O)O
PRP SMILES "OpenEye OEToolkits" 1.5.0 C(C1C(C(C(O1)OP(=O)(O)OP(=O)(O)O)O)O)OP(=O)(O)O
PRP InChI InChI 1.03 InChI=1S/C5H13O14P3/c6-3-2(1-16-20(8,9)10)17-5(4(3)7)18-22(14,15)19-21(11,12)13/h2-7H,1H2,(H,14,15)(H2,8,9,10)(H2,11,12,13)/t2-,3-,4-,5-/m1/s1
PRP InChIKey InChI 1.03 PQGCEDQWHSBAJP-TXICZTDVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PRP "SYSTEMATIC NAME" ACDLabs 10.04 1-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-5-O-phosphono-alpha-D-ribofuranose
PRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl] phosphono hydrogen phosphate"
PRP "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Ribf1PO35PO3
#
_pdbx_chem_comp_related.comp_id PRP
_pdbx_chem_comp_related.related_comp_id RIB
_pdbx_chem_comp_related.relationship_type "Carbohydrate core"
_pdbx_chem_comp_related.details ?
#
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
1 PRP C1 RIB C1 "Carbohydrate core"
2 PRP C2 RIB C2 "Carbohydrate core"
3 PRP C3 RIB C3 "Carbohydrate core"
4 PRP C4 RIB C4 "Carbohydrate core"
5 PRP C5 RIB C5 "Carbohydrate core"
6 PRP O1 RIB O1 "Carbohydrate core"
7 PRP O2 RIB O2 "Carbohydrate core"
8 PRP O3 RIB O3 "Carbohydrate core"
9 PRP O4 RIB O4 "Carbohydrate core"
10 PRP O5 RIB O5 "Carbohydrate core"
11 PRP H1 RIB H1 "Carbohydrate core"
12 PRP H2 RIB H2 "Carbohydrate core"
13 PRP H3 RIB H3 "Carbohydrate core"
14 PRP H4 RIB H4 "Carbohydrate core"
15 PRP H51 RIB H51 "Carbohydrate core"
16 PRP H52 RIB H52 "Carbohydrate core"
17 PRP HO2 RIB HO2 "Carbohydrate core"
18 PRP HO3 RIB HO3 "Carbohydrate core"
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
PRP "CARBOHYDRATE ISOMER" D PDB ?
PRP "CARBOHYDRATE RING" furanose PDB ?
PRP "CARBOHYDRATE ANOMER" alpha PDB ?
PRP "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PRP 'Create component' 1999-07-08 RCSB
PRP 'Modify descriptor' 2011-06-04 RCSB
PRP 'Other modification' 2020-07-03 RCSB
PRP 'Modify parent residue' 2020-07-17 RCSB
PRP 'Modify name' 2020-07-17 RCSB
PRP 'Modify synonyms' 2020-07-17 RCSB
PRP 'Modify internal type' 2020-07-17 RCSB
PRP 'Modify linking type' 2020-07-17 RCSB
PRP 'Modify leaving atom flag' 2020-07-17 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id PRP
_pdbe_chem_comp_drugbank_details.drugbank_id DB01632
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '5-O-phosphono-alpha-D-ribofuranosyl diphosphate'
_pdbe_chem_comp_drugbank_details.description
'The key substance in the biosynthesis of histidine, tryptophan, and purine and pyrimidine nucleotides.'
_pdbe_chem_comp_drugbank_details.cas_number 13270-65-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
PRP 'ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID' wwPDB ?
PRP 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose wwPDB ?
PRP 1-O-pyrophosphono-5-O-phosphono-D-ribose wwPDB ?
PRP 1-O-pyrophosphono-5-O-phosphono-ribose wwPDB ?
PRP '5-O-phosphono-alpha-D-ribofuranosyl diphosphate' DrugBank ?
PRP '5-O-phosphono-α-D-ribofuranosyl diphosphate' DrugBank ?
PRP '5-Phospho-alpha-D-ribose 1-diphosphate' DrugBank ?
PRP '5-Phosphoribosyl 1-pyrophosphate' DrugBank ?
PRP '5-Phosphoribosyl diphosphate' DrugBank ?
PRP 'Phosphoribosyl pyrophosphate' DrugBank ?
PRP Phosphoribosylpyrophosphate DrugBank ?
PRP PRib-PP DrugBank ?
PRP PRPP DrugBank ?
PRP 'α-D-ribofuranose 5-(dihydrogen phosphate) 1-(trihydrogen diphosphate)' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PRP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01632
_pdbe_chem_comp_drugbank_classification.parent 'Pentose phosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
PRP DB01632 'Hypoxanthine-guanine-xanthine phosphoribosyltransferase' 'Plasmodium falciparum (isolate FCR-3 / Gambia)' P20035 unknown 1
PRP DB01632 'Hypoxanthine-guanine phosphoribosyltransferase' Humans P00492 unknown 2
PRP DB01632 'Orotate phosphoribosyltransferase' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' P08870 unknown 3
PRP DB01632 'Uridine-cytidine kinase-like 1' Humans Q9NWZ5 unknown 4
PRP DB01632 'Hypoxanthine phosphoribosyltransferase' 'Trypanosoma cruzi' Q27796 unknown 5
PRP DB01632 'Adenine phosphoribosyltransferase' Humans P07741 unknown 6
PRP DB01632 'Anthranilate phosphoribosyltransferase' 'Pectobacterium carotovorum' Q8VP84 unknown 7
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PRP C1 C 10.212 -0.996 1
PRP C2 C 9.748 -2.422 2
PRP C3 C 8.248 -2.422 3
PRP C4 C 7.785 -0.996 4
PRP C5 C 6.358 -0.532 5
PRP O1 O 11.639 -0.532 6
PRP O2 O 10.630 -3.636 7
PRP O3 O 7.367 -3.636 8
PRP O4 O 8.998 -0.114 9
PRP O5 O 6.046 0.935 10
PRP P P 4.620 1.398 11
PRP O1P O 3.193 1.862 12
PRP O2P O 5.083 2.825 13
PRP O3P O 4.156 -0.028 14
PRP PA P 11.950 0.935 15
PRP O1A O 13.418 0.623 16
PRP O2A O 10.483 1.247 17
PRP O3A O 12.262 2.402 18
PRP PB P 13.689 2.866 19
PRP O1B O 15.116 3.329 20
PRP O2B O 13.225 4.292 21
PRP O3B O 14.152 1.439 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PRP C1 C2 SINGLE NONE 1
PRP C1 O1 SINGLE BEGINDASH 2
PRP C1 O4 SINGLE NONE 3
PRP C2 C3 SINGLE NONE 4
PRP C2 O2 SINGLE BEGINDASH 5
PRP C3 C4 SINGLE NONE 6
PRP C3 O3 SINGLE BEGINDASH 7
PRP C4 C5 SINGLE BEGINWEDGE 8
PRP C4 O4 SINGLE NONE 9
PRP C5 O5 SINGLE NONE 10
PRP O1 PA SINGLE NONE 11
PRP O5 P SINGLE NONE 12
PRP P O1P DOUBLE NONE 13
PRP P O2P SINGLE NONE 14
PRP P O3P SINGLE NONE 15
PRP PA O1A DOUBLE NONE 16
PRP PA O2A SINGLE BEGINDASH 17
PRP PA O3A SINGLE NONE 18
PRP O3A PB SINGLE NONE 19
PRP PB O1B DOUBLE NONE 20
PRP PB O2B SINGLE NONE 21
PRP PB O3B SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PRP MurckoScaffold S1 scaffold C1CCOC1 InChI=1S/C4H8O/c1-2-4-5-3-1/h1-4H2 WYURNTSHIVDZCO-UHFFFAOYSA-N
PRP furanose F1 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
PRP phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
PRP ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PRP C1 S1 1
PRP C2 S1 1
PRP C3 S1 1
PRP C4 S1 1
PRP O4 S1 1
PRP C3 F1 1
PRP C4 F1 1
PRP O4 F1 1
PRP C1 F1 1
PRP C2 F1 1
PRP O1 F1 1
PRP O1 F2 1
PRP PA F2 1
PRP O1A F2 1
PRP O2A F2 1
PRP O3A F2 1
PRP O5 F2 2
PRP P F2 2
PRP O1P F2 2
PRP O2P F2 2
PRP O3P F2 2
PRP O3A F2 3
PRP PB F2 3
PRP O1B F2 3
PRP O2B F2 3
PRP O3B F2 3
PRP C2 F3 1
PRP C3 F3 1
PRP C4 F3 1
PRP O4 F3 1
PRP C1 F3 1
PRP C5 F3 1
PRP O5 F3 1
PRP O3 F3 1
PRP O2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PRP
_pdbe_chem_comp_rdkit_properties.exactmw 389.952
_pdbe_chem_comp_rdkit_properties.amw 390.067
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 140.727
_pdbe_chem_comp_rdkit_properties.tpsa 229.740
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.231
_pdbe_chem_comp_rdkit_properties.CrippenMR 62.710
_pdbe_chem_comp_rdkit_properties.chi0v 12.240
_pdbe_chem_comp_rdkit_properties.chi1v 8.797
_pdbe_chem_comp_rdkit_properties.chi2v 3.742
_pdbe_chem_comp_rdkit_properties.chi3v 3.742
_pdbe_chem_comp_rdkit_properties.chi4v 2.478
_pdbe_chem_comp_rdkit_properties.chi0n 22.557
_pdbe_chem_comp_rdkit_properties.chi1n 10.273
_pdbe_chem_comp_rdkit_properties.chi2n 1.437
_pdbe_chem_comp_rdkit_properties.chi3n 1.437
_pdbe_chem_comp_rdkit_properties.chi4n 0.847
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.250
_pdbe_chem_comp_rdkit_properties.kappa1 8.086
_pdbe_chem_comp_rdkit_properties.kappa2 7.013
_pdbe_chem_comp_rdkit_properties.kappa3 6.787
_pdbe_chem_comp_rdkit_properties.Phi 2.577
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PRP UniChem ChEMBL CHEMBL1235437
PRP UniChem DrugBank DB01632
PRP UniChem 'KEGG LIGAND' C00119
PRP UniChem ChEBI 17111
PRP UniChem ZINC ZINC000008215630
PRP UniChem SureChEMBL SCHEMBL187952
PRP UniChem HMDB HMDB0000280
PRP UniChem NMRShiftDB 60020551
PRP UniChem 'EPA CompTox Dashboard' DTXSID40895038
PRP UniChem MetaboLights MTBLC17111
PRP UniChem BRENDA 111659
PRP UniChem BRENDA 112951
PRP UniChem BRENDA 11937
PRP UniChem BRENDA 12395
PRP UniChem BRENDA 135946
PRP UniChem BRENDA 15579
PRP UniChem BRENDA 158
PRP UniChem BRENDA 16047
PRP UniChem BRENDA 172985
PRP UniChem BRENDA 29609
PRP UniChem BRENDA 30347
PRP UniChem BRENDA 36846
PRP UniChem BRENDA 48949
PRP UniChem BRENDA 55502
PRP UniChem BRENDA 63213
PRP UniChem BRENDA 72285
PRP UniChem BRENDA 91961
PRP UniChem 'Probes And Drugs' PD008904
PRP UniChem Nikkaji J40.073D
PRP UniChem 'PubChem TPHARMA' 46504019
PRP UniChem PubChem 7339
PRP UniChem ACTor 97-55-2
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PRP C1 0.561 -0.576 0.156 ETKDGv3 1
PRP C2 -0.134 0.503 0.986 ETKDGv3 2
PRP C3 -1.455 -0.132 1.347 ETKDGv3 3
PRP C4 -1.668 -1.139 0.212 ETKDGv3 4
PRP C5 -2.607 -0.597 -0.874 ETKDGv3 5
PRP O1 1.437 -1.341 0.965 ETKDGv3 6
PRP O2 0.612 0.866 2.119 ETKDGv3 7
PRP O3 -1.410 -0.776 2.601 ETKDGv3 8
PRP O4 -0.418 -1.446 -0.373 ETKDGv3 9
PRP O5 -3.899 -0.431 -0.338 ETKDGv3 10
PRP P -4.931 0.134 -1.572 ETKDGv3 11
PRP O1P -5.059 -0.910 -2.660 ETKDGv3 12
PRP O2P -6.460 0.424 -0.907 ETKDGv3 13
PRP O3P -4.337 1.581 -2.226 ETKDGv3 14
PRP PA 3.059 -0.937 0.617 ETKDGv3 15
PRP O1A 3.954 -1.657 1.601 ETKDGv3 16
PRP O2A 3.426 -1.448 -0.956 ETKDGv3 17
PRP O3A 3.266 0.746 0.783 ETKDGv3 18
PRP PB 4.771 1.154 0.101 ETKDGv3 19
PRP O1B 4.693 1.067 -1.407 ETKDGv3 20
PRP O2B 5.996 0.132 0.669 ETKDGv3 21
PRP O3B 5.145 2.746 0.534 ETKDGv3 22
PRP H1 1.060 -0.087 -0.715 ETKDGv3 23
PRP H2 -0.313 1.396 0.341 ETKDGv3 24
PRP H3 -2.254 0.641 1.384 ETKDGv3 25
PRP H4 -2.111 -2.078 0.612 ETKDGv3 26
PRP H51 -2.624 -1.334 -1.710 ETKDGv3 27
PRP H52 -2.201 0.371 -1.245 ETKDGv3 28
PRP HO2 0.175 1.674 2.496 ETKDGv3 29
PRP HO3 -0.717 -1.486 2.563 ETKDGv3 30
PRP HOP2 -6.988 0.816 -1.648 ETKDGv3 31
PRP HOP3 -3.737 1.306 -2.964 ETKDGv3 32
PRP HOA2 3.168 -2.405 -0.977 ETKDGv3 33
PRP HOB2 6.829 0.488 0.269 ETKDGv3 34
PRP HOB3 5.174 2.737 1.524 ETKDGv3 35
#