Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PRP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 1.414 -0.754 0.218
2 C2 C C2 R N N 0 2.82 -0.609 -0.404
3 C3 C C3 S N N 0 2.562 0.095 -1.754
4 C4 C C4 R N N 0 1.03 0.291 -1.792
5 C5 C C5 N N N 0 0.494 0.087 -3.21
6 O1 O O1 N N N 0 1.147 0.334 1.104
7 O2 O O2 N N N 0 3.658 0.195 0.428
8 O3 O O3 N N N 0 3.23 1.357 -1.796
9 O4 O O4 N N N 0 0.508 -0.725 -0.905
10 O5 O O5 N N N 0 -0.929 0.203 -3.202
11 P P P N N N 0 -1.423 -0.021 -4.718
12 O1P O O1P N N N 0 -1.007 -1.364 -5.179
13 O2P O O2P N N N 0 -3.027 0.096 -4.784
14 O3P O O3P N N N 0 -0.764 1.099 -5.668
15 PA P PA R N N 0 0.157 -0.225 2.244
16 O1A O O1A N N N 0 -1.092 -0.711 1.617
17 O2A O O2A N N N 0 0.871 -1.437 3.027
18 O3A O O3A N N N 0 -0.186 0.955 3.283
19 PB P PB N N N 0 -1.175 0.329 4.389
20 O1B O O1B N N N 0 -0.498 -0.793 5.075
21 O2B O O2B N N N 0 -1.562 1.461 5.465
22 O3B O O3B N N N 0 -2.512 -0.208 3.671
23 H1 H H1 N N N 0 1.33 -1.703 0.748
24 H2 H H2 N N N 0 3.27 -1.589 -0.564
25 H3 H H3 N N N 0 2.886 -0.535 -2.582
26 H4 H H4 N N N 0 0.767 1.284 -1.426
27 H51 H H51 N N N 0 0.916 0.845 -3.87
28 H52 H H52 N N N 0 0.776 -0.902 -3.566
29 HO2 H HO2 N N Y 0 3.785 -0.292 1.253
30 HO3 H HO3 N N Y 0 4.177 1.174 -1.74
31 HOP2 H HOP2 N N N 0 -3.28 -0.044 -5.706
32 HOP3 H HOP3 N N N 0 -1.059 1.957 -5.335
33 HOA2 H HOA2 N N N 0 1.679 -1.079 3.42
34 HOB2 H HOB2 N N N 0 -2.153 1.046 6.108
35 HOB3 H HOB3 N N N 0 -2.921 0.552 3.236