Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P8M    

Bonds between two atoms of the molecule

Total Number of Bonds: 76


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O43 S02 O S doub 1.42 N N
2 N01 S02 N S sing 1.66 N N
3 F42 C05 F C sing 1.35 N N
4 S02 O03 S O doub 1.42 N N
5 S02 C04 S C sing 1.76 N N
6 O19 C17 O C doub 1.22 N N
7 C05 C04 C C doub 1.38 N Y
8 C05 C06 C C sing 1.38 N Y
9 O18 C17 O C sing 1.35 N N
10 C17 C16 C C sing 1.47 N N
11 C04 C09 C C sing 1.38 N Y
12 C06 C07 C C doub 1.38 N Y
13 C16 N15 C N sing 1.33 N Y
14 C16 C20 C C doub 1.35 N Y
15 N15 C14 N C doub 1.3 N Y
16 C20 S21 C S sing 1.71 N Y
17 C09 C08 C C doub 1.38 N Y
18 C14 N13 C N sing 1.39 N N
19 C14 S21 C S sing 1.76 N Y
20 N13 C12 N C sing 1.36 N Y
21 N13 N22 N N sing 1.4 N Y
22 C07 C08 C C sing 1.38 N Y
23 C07 C10 C C sing 1.51 N N
24 C38 C12 C C sing 1.51 N N
25 C38 C39 C C sing 1.53 N N
26 C12 C11 C C doub 1.35 N Y
27 N22 C23 N C doub 1.32 N Y
28 C23 C11 C C sing 1.41 N Y
29 C23 C24 C C sing 1.48 N N
30 C11 C10 C C sing 1.51 N N
31 C33 C32 C C sing 1.54 N N
32 C33 C29 C C sing 1.54 N N
33 C24 C25 C C doub 1.39 N Y
34 C24 C36 C C sing 1.39 N Y
35 C40 C39 C C sing 1.53 N N
36 C40 C41 C C sing 1.53 N N
37 C25 C26 C C sing 1.39 N Y
38 C36 C35 C C doub 1.38 N Y
39 C39 C41 C C sing 1.53 N N
40 C32 C31 C C sing 1.54 N N
41 C26 C27 C C sing 1.43 N N
42 C26 C34 C C doub 1.4 N Y
43 C35 C34 C C sing 1.38 N Y
44 C27 C28 C C trip 1.17 N N
45 C28 C29 C C sing 1.47 N N
46 C34 F37 C F sing 1.35 N N
47 C29 C30 C C sing 1.55 N N
48 C31 C30 C C sing 1.55 N N
49 C38 H1 C H sing 1.09 N N
50 C38 H2 C H sing 1.09 N N
51 C39 H3 C H sing 1.09 N N
52 C40 H4 C H sing 1.09 N N
53 C40 H5 C H sing 1.09 N N
54 C41 H6 C H sing 1.09 N N
55 C41 H7 C H sing 1.09 N N
56 C36 H8 C H sing 1.08 N N
57 C33 H9 C H sing 1.09 N N
58 C33 H10 C H sing 1.09 N N
59 C30 H11 C H sing 1.09 N N
60 C30 H12 C H sing 1.09 N N
61 C25 H13 C H sing 1.08 N N
62 C10 H14 C H sing 1.09 N N
63 C10 H15 C H sing 1.09 N N
64 N01 H16 N H sing 0.97 N N
65 N01 H17 N H sing 0.97 N N
66 C06 H18 C H sing 1.08 N N
67 C08 H19 C H sing 1.08 N N
68 C09 H20 C H sing 1.08 N N
69 O18 H21 O H sing 0.97 N N
70 C20 H22 C H sing 1.08 N N
71 C29 H23 C H sing 1.09 N N
72 C31 H24 C H sing 1.09 N N
73 C31 H25 C H sing 1.09 N N
74 C32 H26 C H sing 1.09 N N
75 C32 H27 C H sing 1.09 N N
76 C35 H28 C H sing 1.08 N N