data_P8M
#
_chem_comp.id P8M
_chem_comp.name
"2-{3-[3-(cyclopentylethynyl)-4-fluorophenyl]-5-(cyclopropylmethyl)-4-[(3-fluoro-4-sulfamoylphenyl)methyl]-1H-pyrazol-1-yl}-1,3-thiazole-4-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H28 F2 N4 O4 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-08-06
_chem_comp.pdbx_modified_date 2020-09-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 622.705
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P8M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Q0D
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P8M C38 C1 C 0 1 N N N N N N 35.036 87.060 53.201 3.632 1.776 1.281 C38 P8M 1
P8M C39 C2 C 0 1 N N N N N N 35.939 86.952 54.422 3.562 2.550 -0.037 C39 P8M 2
P8M C40 C3 C 0 1 N N N N N N 37.419 86.694 54.245 3.099 4.007 0.024 C40 P8M 3
P8M C41 C4 C 0 1 N N N N N N 36.936 88.068 54.671 4.570 3.683 -0.245 C41 P8M 4
P8M C36 C5 C 0 1 Y N N N N N 29.974 90.397 54.403 -0.884 -1.069 3.088 C36 P8M 5
P8M C33 C6 C 0 1 N N N N N N 25.592 84.217 53.911 -6.015 -4.901 -0.879 C33 P8M 6
P8M C30 C7 C 0 1 N N N N N N 25.397 84.600 56.300 -5.060 -3.558 -2.678 C30 P8M 7
P8M C25 C8 C 0 1 Y N N N N N 29.474 88.067 54.285 -1.150 -1.972 0.868 C25 P8M 8
P8M C10 C9 C 0 1 N N N N N N 32.182 86.203 54.225 0.729 1.616 2.425 C10 P8M 9
P8M N01 N1 N 0 1 N N N N N N 29.853 82.205 49.389 -3.059 3.516 -2.783 N01 P8M 10
P8M S02 S1 S 0 1 N N N N N N 28.835 83.353 50.089 -2.899 4.486 -1.451 S02 P8M 11
P8M O03 O1 O 0 1 N N N N N N 27.715 82.650 50.925 -4.180 4.539 -0.838 O03 P8M 12
P8M C04 C10 C 0 1 Y N N N N N 29.831 84.171 51.315 -1.840 3.647 -0.319 C04 P8M 13
P8M C05 C11 C 0 1 Y N N N N N 30.833 85.000 50.930 -2.242 2.450 0.248 C05 P8M 14
P8M C06 C12 C 0 1 Y N N N N N 31.606 85.652 51.848 -1.409 1.792 1.137 C06 P8M 15
P8M C07 C13 C 0 1 Y N N N N N 31.337 85.480 53.198 -0.178 2.331 1.457 C07 P8M 16
P8M C08 C14 C 0 1 Y N N N N N 30.298 84.647 53.594 0.223 3.527 0.890 C08 P8M 17
P8M C09 C15 C 0 1 Y N N N N N 29.535 83.994 52.645 -0.606 4.182 -0.002 C09 P8M 18
P8M C11 C16 C 0 1 Y N N N N N 32.592 87.599 53.812 1.461 0.512 1.705 C11 P8M 19
P8M C12 C17 C 0 1 Y N N N N N 33.842 87.962 53.389 2.716 0.582 1.211 C12 P8M 20
P8M N13 N2 N 0 1 Y N N N N N 33.790 89.296 53.110 3.006 -0.618 0.640 N13 P8M 21
P8M C14 C18 C 0 1 Y N N N N N 34.816 90.141 52.734 4.203 -0.959 0.016 C14 P8M 22
P8M N15 N3 N 0 1 Y N N N N N 35.848 89.786 52.105 4.462 -2.105 -0.529 N15 P8M 23
P8M C16 C19 C 0 1 Y N N N N N 36.787 90.812 51.945 5.674 -2.226 -1.075 C16 P8M 24
P8M C17 C20 C 0 1 N N N N N N 38.090 90.595 51.183 6.124 -3.461 -1.734 C17 P8M 25
P8M O18 O2 O 0 1 N N N N N N 38.822 91.604 51.111 5.302 -4.528 -1.801 O18 P8M 26
P8M O19 O3 O 0 1 N N N N N N 38.235 89.432 50.762 7.238 -3.522 -2.217 O19 P8M 27
P8M C20 C21 C 0 1 Y N N N N N 36.451 91.965 52.498 6.456 -1.128 -0.978 C20 P8M 28
P8M S21 S2 S 0 1 Y N N N N N 34.848 91.837 53.319 5.595 0.103 -0.162 S21 P8M 29
P8M N22 N4 N 0 1 Y N N N N N 32.551 89.832 53.415 1.889 -1.450 0.790 N22 P8M 30
P8M C23 C22 C 0 1 Y N N N N N 31.817 88.821 53.811 0.960 -0.776 1.434 C23 P8M 31
P8M C24 C23 C 0 1 Y N N N N N 30.402 89.093 54.176 -0.385 -1.283 1.803 C24 P8M 32
P8M C26 C24 C 0 1 Y N N N N N 28.146 88.329 54.628 -2.413 -2.445 1.220 C26 P8M 33
P8M C27 C25 C 0 1 N N N N N N 27.197 87.274 54.747 -3.204 -3.161 0.265 C27 P8M 34
P8M C28 C26 C 0 1 N N N N N N 26.391 86.402 54.845 -3.852 -3.747 -0.518 C28 P8M 35
P8M C29 C27 C 0 1 N N N N N N 25.386 85.346 54.944 -4.666 -4.483 -1.500 C29 P8M 36
P8M C31 C28 C 0 1 N N N N N N 26.409 83.435 56.122 -6.266 -2.772 -2.107 C31 P8M 37
P8M C32 C29 C 0 1 N N N N N N 26.591 83.242 54.584 -7.032 -3.813 -1.265 C32 P8M 38
P8M C34 C30 C 0 1 Y N N N N N 27.772 89.638 54.850 -2.905 -2.219 2.509 C34 P8M 39
P8M C35 C31 C 0 1 Y N N N N N 28.668 90.667 54.742 -2.135 -1.538 3.435 C35 P8M 40
P8M F37 F1 F 0 1 N N N N N N 26.484 89.917 55.179 -4.128 -2.676 2.855 F37 P8M 41
P8M F42 F2 F 0 1 N N N N N N 31.072 85.129 49.620 -3.446 1.924 -0.066 F42 P8M 42
P8M O43 O4 O 0 1 N N N N N N 28.404 84.317 48.924 -2.193 5.642 -1.879 O43 P8M 43
P8M H1 H1 H 0 1 N N N N N N 34.671 86.053 52.953 4.655 1.440 1.451 H1 P8M 44
P8M H2 H2 H 0 1 N N N N N N 35.634 87.450 52.364 3.322 2.425 2.101 H2 P8M 45
P8M H3 H3 H 0 1 N N N N N N 35.479 86.512 55.319 3.274 1.966 -0.910 H3 P8M 46
P8M H4 H4 H 0 1 N N N N N N 37.955 86.053 54.961 2.506 4.382 -0.810 H4 P8M 47
P8M H5 H5 H 0 1 N N N N N N 37.834 86.545 53.237 2.844 4.414 1.003 H5 P8M 48
P8M H6 H6 H 0 1 N N N N N N 37.120 88.423 55.696 5.283 3.876 0.557 H6 P8M 49
P8M H7 H7 H 0 1 N N N N N N 37.000 88.915 53.972 4.944 3.844 -1.256 H7 P8M 50
P8M H8 H8 H 0 1 N N N N N N 30.678 91.211 54.312 -0.287 -0.538 3.815 H8 P8M 51
P8M H9 H9 H 0 1 N N N N N N 26.012 84.618 52.977 -6.328 -5.865 -1.281 H9 P8M 52
P8M H10 H10 H 0 1 N N N N N N 24.640 83.709 53.697 -5.924 -4.960 0.205 H10 P8M 53
P8M H11 H11 H 0 1 N N N N N N 25.723 85.273 57.107 -4.243 -2.883 -2.930 H11 P8M 54
P8M H12 H12 H 0 1 N N N N N N 24.396 84.208 56.532 -5.356 -4.145 -3.548 H12 P8M 55
P8M H13 H13 H 0 1 N N N N N N 29.784 87.049 54.101 -0.765 -2.144 -0.126 H13 P8M 56
P8M H14 H14 H 0 1 N N N N N N 31.605 86.274 55.159 1.450 2.322 2.837 H14 P8M 57
P8M H15 H15 H 0 1 N N N N N N 33.093 85.613 54.401 0.135 1.190 3.233 H15 P8M 58
P8M H16 H16 H 0 1 N N N N N N 30.160 81.560 50.089 -2.438 3.602 -3.524 H16 P8M 59
P8M H17 H17 H 0 1 N N N N N N 29.357 81.710 48.675 -3.773 2.861 -2.824 H17 P8M 60
P8M H18 H18 H 0 1 N N N N N N 32.415 86.292 51.528 -1.722 0.858 1.581 H18 P8M 61
P8M H19 H19 H 0 1 N N N N N N 30.087 84.510 54.644 1.185 3.948 1.141 H19 P8M 62
P8M H20 H20 H 0 1 N N N N N N 28.718 83.354 52.944 -0.290 5.114 -0.447 H20 P8M 63
P8M H21 H21 H 0 1 N N N N N N 39.618 91.386 50.640 5.642 -5.317 -2.244 H21 P8M 64
P8M H22 H22 H 0 1 N N N N N N 37.053 92.861 52.463 7.462 -1.041 -1.360 H22 P8M 65
P8M H23 H23 H 0 1 N N N N N N 24.385 85.776 54.793 -4.125 -5.357 -1.863 H23 P8M 66
P8M H24 H24 H 0 1 N N N N N N 26.014 82.515 56.577 -5.922 -1.951 -1.478 H24 P8M 67
P8M H25 H25 H 0 1 N N N N N N 27.371 83.692 56.590 -6.894 -2.395 -2.915 H25 P8M 68
P8M H26 H26 H 0 1 N N N N N N 26.363 82.204 54.299 -7.839 -4.249 -1.854 H26 P8M 69
P8M H27 H27 H 0 1 N N N N N N 27.622 83.486 54.287 -7.435 -3.344 -0.368 H27 P8M 70
P8M H28 H28 H 0 1 N N N N N N 28.352 91.684 54.922 -2.514 -1.373 4.433 H28 P8M 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P8M O43 S02 DOUB N N 1
P8M N01 S02 SING N N 2
P8M F42 C05 SING N N 3
P8M S02 O03 DOUB N N 4
P8M S02 C04 SING N N 5
P8M O19 C17 DOUB N N 6
P8M C05 C04 DOUB Y N 7
P8M C05 C06 SING Y N 8
P8M O18 C17 SING N N 9
P8M C17 C16 SING N N 10
P8M C04 C09 SING Y N 11
P8M C06 C07 DOUB Y N 12
P8M C16 N15 SING Y N 13
P8M C16 C20 DOUB Y N 14
P8M N15 C14 DOUB Y N 15
P8M C20 S21 SING Y N 16
P8M C09 C08 DOUB Y N 17
P8M C14 N13 SING N N 18
P8M C14 S21 SING Y N 19
P8M N13 C12 SING Y N 20
P8M N13 N22 SING Y N 21
P8M C07 C08 SING Y N 22
P8M C07 C10 SING N N 23
P8M C38 C12 SING N N 24
P8M C38 C39 SING N N 25
P8M C12 C11 DOUB Y N 26
P8M N22 C23 DOUB Y N 27
P8M C23 C11 SING Y N 28
P8M C23 C24 SING N N 29
P8M C11 C10 SING N N 30
P8M C33 C32 SING N N 31
P8M C33 C29 SING N N 32
P8M C24 C25 DOUB Y N 33
P8M C24 C36 SING Y N 34
P8M C40 C39 SING N N 35
P8M C40 C41 SING N N 36
P8M C25 C26 SING Y N 37
P8M C36 C35 DOUB Y N 38
P8M C39 C41 SING N N 39
P8M C32 C31 SING N N 40
P8M C26 C27 SING N N 41
P8M C26 C34 DOUB Y N 42
P8M C35 C34 SING Y N 43
P8M C27 C28 TRIP N N 44
P8M C28 C29 SING N N 45
P8M C34 F37 SING N N 46
P8M C29 C30 SING N N 47
P8M C31 C30 SING N N 48
P8M C38 H1 SING N N 49
P8M C38 H2 SING N N 50
P8M C39 H3 SING N N 51
P8M C40 H4 SING N N 52
P8M C40 H5 SING N N 53
P8M C41 H6 SING N N 54
P8M C41 H7 SING N N 55
P8M C36 H8 SING N N 56
P8M C33 H9 SING N N 57
P8M C33 H10 SING N N 58
P8M C30 H11 SING N N 59
P8M C30 H12 SING N N 60
P8M C25 H13 SING N N 61
P8M C10 H14 SING N N 62
P8M C10 H15 SING N N 63
P8M N01 H16 SING N N 64
P8M N01 H17 SING N N 65
P8M C06 H18 SING N N 66
P8M C08 H19 SING N N 67
P8M C09 H20 SING N N 68
P8M O18 H21 SING N N 69
P8M C20 H22 SING N N 70
P8M C29 H23 SING N N 71
P8M C31 H24 SING N N 72
P8M C31 H25 SING N N 73
P8M C32 H26 SING N N 74
P8M C32 H27 SING N N 75
P8M C35 H28 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P8M SMILES ACDLabs 12.01 "C(c2c(Cc1cc(c(S(N)(=O)=O)cc1)F)c(nn2c3scc(n3)C(O)=O)c4ccc(c(c4)C#CC5CCCC5)F)C6CC6"
P8M InChI InChI 1.03 InChI=1S/C31H28F2N4O4S2/c32-24-11-10-22(16-21(24)9-7-18-3-1-2-4-18)29-23(13-20-8-12-28(25(33)14-20)43(34,40)41)27(15-19-5-6-19)37(36-29)31-35-26(17-42-31)30(38)39/h8,10-12,14,16-19H,1-6,13,15H2,(H,38,39)(H2,34,40,41)
P8M InChIKey InChI 1.03 KTCLNOGFWLXRFB-UHFFFAOYSA-N
P8M SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)c1ccc(Cc2c(CC3CC3)n(nc2c4ccc(F)c(c4)C#CC5CCCC5)c6scc(n6)C(O)=O)cc1F"
P8M SMILES CACTVS 3.385 "N[S](=O)(=O)c1ccc(Cc2c(CC3CC3)n(nc2c4ccc(F)c(c4)C#CC5CCCC5)c6scc(n6)C(O)=O)cc1F"
P8M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1Cc2c(n(nc2c3ccc(c(c3)C#CC4CCCC4)F)c5nc(cs5)C(=O)O)CC6CC6)F)S(=O)(=O)N"
P8M SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1Cc2c(n(nc2c3ccc(c(c3)C#CC4CCCC4)F)c5nc(cs5)C(=O)O)CC6CC6)F)S(=O)(=O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P8M "SYSTEMATIC NAME" ACDLabs 12.01 "2-{3-[3-(cyclopentylethynyl)-4-fluorophenyl]-5-(cyclopropylmethyl)-4-[(3-fluoro-4-sulfamoylphenyl)methyl]-1H-pyrazol-1-yl}-1,3-thiazole-4-carboxylic acid"
P8M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-[3-(2-cyclopentylethynyl)-4-fluoranyl-phenyl]-5-(cyclopropylmethyl)-4-[(3-fluoranyl-4-sulfamoyl-phenyl)methyl]pyrazol-1-yl]-1,3-thiazole-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P8M 'Create component' 2019-08-06 RCSB
P8M 'Initial release' 2020-09-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P8M C38 C 14.888 0.473 1
P8M C39 C 16.315 0.937 2
P8M C40 C 17.782 0.625 3
P8M C41 C 17.319 2.051 4
P8M C36 C 12.560 -5.567 5
P8M C33 C 4.963 -1.823 6
P8M C30 C 4.213 -4.131 7
P8M C25 C 10.822 -3.636 8
P8M C10 C 11.907 -0.854 9
P8M N01 N 10.407 5.146 10
P8M S02 S 11.907 5.146 11
P8M O03 O 11.907 6.646 12
P8M C04 C 11.907 3.646 13
P8M C05 C 10.608 2.896 14
P8M C06 C 10.608 1.396 15
P8M C07 C 11.907 0.646 16
P8M C08 C 13.206 1.396 17
P8M C09 C 13.206 2.896 18
P8M C11 C 13.206 -1.604 19
P8M C12 C 14.576 -0.994 20
P8M N13 N 15.580 -2.109 21
P8M C14 C 17.072 -1.952 22
P8M N15 N 17.822 -0.653 23
P8M C16 C 19.289 -0.965 24
P8M C17 C 20.404 0.039 25
P8M O18 O 20.092 1.506 26
P8M O19 O 21.830 -0.425 27
P8M C20 C 19.446 -2.457 28
P8M S21 S 18.076 -3.067 29
P8M N22 N 14.830 -3.408 30
P8M C23 C 13.363 -3.096 31
P8M C24 C 12.248 -4.100 32
P8M C26 C 9.707 -4.640 33
P8M C27 C 8.280 -4.176 34
P8M C28 C 6.854 -3.713 35
P8M C29 C 5.427 -3.249 36
P8M C31 C 3.000 -3.249 37
P8M C32 C 3.463 -1.823 38
P8M C34 C 10.019 -6.107 39
P8M C35 C 11.445 -6.571 40
P8M F37 F 8.904 -7.111 41
P8M F42 F 9.309 3.646 42
P8M O43 O 13.407 5.146 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P8M O43 S02 DOUBLE NONE 1
P8M N01 S02 SINGLE NONE 2
P8M F42 C05 SINGLE NONE 3
P8M S02 O03 DOUBLE NONE 4
P8M S02 C04 SINGLE NONE 5
P8M O19 C17 DOUBLE NONE 6
P8M C05 C04 DOUBLE NONE 7
P8M C05 C06 SINGLE NONE 8
P8M O18 C17 SINGLE NONE 9
P8M C17 C16 SINGLE NONE 10
P8M C04 C09 SINGLE NONE 11
P8M C06 C07 DOUBLE NONE 12
P8M C16 N15 SINGLE NONE 13
P8M C16 C20 DOUBLE NONE 14
P8M N15 C14 DOUBLE NONE 15
P8M C20 S21 SINGLE NONE 16
P8M C09 C08 DOUBLE NONE 17
P8M C14 N13 SINGLE NONE 18
P8M C14 S21 SINGLE NONE 19
P8M N13 C12 SINGLE NONE 20
P8M N13 N22 SINGLE NONE 21
P8M C07 C08 SINGLE NONE 22
P8M C07 C10 SINGLE NONE 23
P8M C38 C12 SINGLE NONE 24
P8M C38 C39 SINGLE NONE 25
P8M C12 C11 DOUBLE NONE 26
P8M N22 C23 DOUBLE NONE 27
P8M C23 C11 SINGLE NONE 28
P8M C23 C24 SINGLE NONE 29
P8M C11 C10 SINGLE NONE 30
P8M C33 C32 SINGLE NONE 31
P8M C33 C29 SINGLE NONE 32
P8M C24 C25 SINGLE NONE 33
P8M C24 C36 DOUBLE NONE 34
P8M C40 C39 SINGLE NONE 35
P8M C40 C41 SINGLE NONE 36
P8M C25 C26 DOUBLE NONE 37
P8M C36 C35 SINGLE NONE 38
P8M C39 C41 SINGLE NONE 39
P8M C32 C31 SINGLE NONE 40
P8M C26 C27 SINGLE NONE 41
P8M C26 C34 SINGLE NONE 42
P8M C35 C34 DOUBLE NONE 43
P8M C27 C28 TRIPLE NONE 44
P8M C28 C29 SINGLE NONE 45
P8M C34 F37 SINGLE NONE 46
P8M C29 C30 SINGLE NONE 47
P8M C31 C30 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
P8M MurckoScaffold S1 scaffold 'C(#CC1CCCC1)c1cccc(-c2nn(-c3nccs3)c(CC3CC3)c2Cc2ccccc2)c1' InChI=1S/C30H29N3S/c1-2-9-23(10-3-1)20-27-28(21-25-15-16-25)33(30-31-17-18-34-30)32-29(27)26-12-6-11-24(19-26)14-13-22-7-4-5-8-22/h1-3,6,9-12,17-19,22,25H,4-5,7-8,15-16,20-21H2 GFPHVWSAGSNULW-UHFFFAOYSA-N
P8M cyclopentane F1 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
P8M cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
P8M phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
P8M pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
P8M thiazole F5 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
P8M C38 S1 1
P8M C39 S1 1
P8M C40 S1 1
P8M C41 S1 1
P8M C36 S1 1
P8M C33 S1 1
P8M C30 S1 1
P8M C25 S1 1
P8M C10 S1 1
P8M C04 S1 1
P8M C05 S1 1
P8M C06 S1 1
P8M C07 S1 1
P8M C08 S1 1
P8M C09 S1 1
P8M C11 S1 1
P8M C12 S1 1
P8M N13 S1 1
P8M C14 S1 1
P8M N15 S1 1
P8M C16 S1 1
P8M C20 S1 1
P8M S21 S1 1
P8M N22 S1 1
P8M C23 S1 1
P8M C24 S1 1
P8M C26 S1 1
P8M C27 S1 1
P8M C28 S1 1
P8M C29 S1 1
P8M C31 S1 1
P8M C32 S1 1
P8M C34 S1 1
P8M C35 S1 1
P8M C33 F1 1
P8M C32 F1 1
P8M C31 F1 1
P8M C30 F1 1
P8M C29 F1 1
P8M C39 F2 1
P8M C40 F2 1
P8M C41 F2 1
P8M C36 F3 1
P8M C24 F3 1
P8M C25 F3 1
P8M C26 F3 1
P8M C34 F3 1
P8M C35 F3 1
P8M C04 F3 2
P8M C05 F3 2
P8M C06 F3 2
P8M C07 F3 2
P8M C08 F3 2
P8M C09 F3 2
P8M C12 F4 1
P8M C11 F4 1
P8M C23 F4 1
P8M N22 F4 1
P8M N13 F4 1
P8M C20 F5 1
P8M C16 F5 1
P8M N15 F5 1
P8M C14 F5 1
P8M S21 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id P8M
_pdbe_chem_comp_rdkit_properties.exactmw 622.152
_pdbe_chem_comp_rdkit_properties.amw 622.719
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.323
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 290.731
_pdbe_chem_comp_rdkit_properties.tpsa 128.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.753
_pdbe_chem_comp_rdkit_properties.CrippenMR 154.689
_pdbe_chem_comp_rdkit_properties.chi0v 22.127
_pdbe_chem_comp_rdkit_properties.chi1v 13.489
_pdbe_chem_comp_rdkit_properties.chi2v 6.736
_pdbe_chem_comp_rdkit_properties.chi3v 6.736
_pdbe_chem_comp_rdkit_properties.chi4v 4.460
_pdbe_chem_comp_rdkit_properties.chi0n 48.494
_pdbe_chem_comp_rdkit_properties.chi1n 25.035
_pdbe_chem_comp_rdkit_properties.chi2n 5.196
_pdbe_chem_comp_rdkit_properties.chi3n 5.196
_pdbe_chem_comp_rdkit_properties.chi4n 3.330
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.920
_pdbe_chem_comp_rdkit_properties.kappa1 10.907
_pdbe_chem_comp_rdkit_properties.kappa2 11.636
_pdbe_chem_comp_rdkit_properties.kappa3 6.390
_pdbe_chem_comp_rdkit_properties.Phi 2.951
#
_pdbe_chem_comp_external_mappings.comp_id P8M
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 154585731
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P8M C38 -3.950 1.128 0.252 ETKDGv3 1
P8M C39 -4.819 1.625 1.414 ETKDGv3 2
P8M C40 -6.310 1.626 1.114 ETKDGv3 3
P8M C41 -5.555 2.941 1.208 ETKDGv3 4
P8M C36 0.632 -0.112 3.394 ETKDGv3 5
P8M C33 6.848 0.674 -0.971 ETKDGv3 6
P8M C30 6.845 -1.725 -0.736 ETKDGv3 7
P8M C25 2.032 0.292 1.434 ETKDGv3 8
P8M C10 -2.243 -1.012 1.762 ETKDGv3 9
P8M N01 -0.979 -6.593 -2.077 ETKDGv3 10
P8M S02 -1.422 -5.059 -2.739 ETKDGv3 11
P8M O03 -2.698 -5.209 -3.518 ETKDGv3 12
P8M C04 -1.647 -3.890 -1.437 ETKDGv3 13
P8M C05 -0.590 -3.387 -0.776 ETKDGv3 14
P8M C06 -0.793 -2.414 0.317 ETKDGv3 15
P8M C07 -2.033 -2.018 0.659 ETKDGv3 16
P8M C08 -3.197 -2.595 -0.057 ETKDGv3 17
P8M C09 -3.014 -3.476 -1.047 ETKDGv3 18
P8M C11 -1.793 0.364 1.334 ETKDGv3 19
P8M C12 -2.492 1.247 0.613 ETKDGv3 20
P8M N13 -1.634 2.350 0.303 ETKDGv3 21
P8M C14 -1.915 3.564 -0.408 ETKDGv3 22
P8M N15 -3.063 3.836 -0.937 ETKDGv3 23
P8M C16 -3.087 5.115 -1.593 ETKDGv3 24
P8M C17 -4.303 5.606 -2.258 ETKDGv3 25
P8M O18 -5.450 4.817 -2.264 ETKDGv3 26
P8M O19 -4.316 6.733 -2.822 ETKDGv3 27
P8M C20 -1.942 5.802 -1.551 ETKDGv3 28
P8M S21 -0.722 4.860 -0.661 ETKDGv3 29
P8M N22 -0.375 2.071 0.839 ETKDGv3 30
P8M C23 -0.438 0.934 1.449 ETKDGv3 31
P8M C24 0.725 0.345 2.134 ETKDGv3 32
P8M C26 3.104 -0.240 2.041 ETKDGv3 33
P8M C27 4.365 -0.307 1.351 ETKDGv3 34
P8M C28 5.420 -0.365 0.771 ETKDGv3 35
P8M C29 6.705 -0.436 0.059 ETKDGv3 36
P8M C31 7.802 -1.395 -1.876 ETKDGv3 37
P8M C32 7.804 0.127 -2.024 ETKDGv3 38
P8M C34 2.986 -0.762 3.422 ETKDGv3 39
P8M C35 1.812 -0.697 4.063 ETKDGv3 40
P8M F37 4.064 -1.302 4.044 ETKDGv3 41
P8M F42 0.674 -3.761 -1.096 ETKDGv3 42
P8M O43 -0.344 -4.579 -3.670 ETKDGv3 43
P8M H1 -4.168 1.656 -0.697 ETKDGv3 44
P8M H2 -4.198 0.067 0.059 ETKDGv3 45
P8M H3 -4.575 1.343 2.461 ETKDGv3 46
P8M H4 -6.959 1.418 1.991 ETKDGv3 47
P8M H5 -6.602 1.349 0.078 ETKDGv3 48
P8M H6 -5.431 3.443 0.227 ETKDGv3 49
P8M H7 -5.760 3.507 2.141 ETKDGv3 50
P8M H8 -0.296 -0.034 3.946 ETKDGv3 51
P8M H9 7.244 1.604 -0.508 ETKDGv3 52
P8M H10 5.867 0.896 -1.451 ETKDGv3 53
P8M H11 5.864 -2.034 -1.164 ETKDGv3 54
P8M H12 7.241 -2.549 -0.102 ETKDGv3 55
P8M H13 2.110 0.673 0.421 ETKDGv3 56
P8M H14 -3.312 -0.981 2.062 ETKDGv3 57
P8M H15 -1.686 -1.343 2.660 ETKDGv3 58
P8M H16 -1.716 -6.849 -1.382 ETKDGv3 59
P8M H17 -0.095 -6.451 -1.539 ETKDGv3 60
P8M H18 0.073 -2.027 0.836 ETKDGv3 61
P8M H19 -4.204 -2.316 0.226 ETKDGv3 62
P8M H20 -3.875 -3.891 -1.555 ETKDGv3 63
P8M H21 -6.298 5.137 -2.715 ETKDGv3 64
P8M H22 -1.780 6.778 -1.992 ETKDGv3 65
P8M H23 7.535 -0.365 0.797 ETKDGv3 66
P8M H24 7.473 -1.886 -2.818 ETKDGv3 67
P8M H25 8.825 -1.751 -1.625 ETKDGv3 68
P8M H26 7.477 0.428 -3.044 ETKDGv3 69
P8M H27 8.828 0.523 -1.846 ETKDGv3 70
P8M H28 1.724 -1.071 5.075 ETKDGv3 71
#