Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P8M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 71


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C38 C C1 N N N 0 3.632 1.776 1.281
2 C39 C C2 N N N 0 3.562 2.55 -0.037
3 C40 C C3 N N N 0 3.099 4.007 0.024
4 C41 C C4 N N N 0 4.57 3.683 -0.245
5 C36 C C5 N Y N 0 -0.884 -1.069 3.088
6 C33 C C6 N N N 0 -6.015 -4.901 -0.879
7 C30 C C7 N N N 0 -5.06 -3.558 -2.678
8 C25 C C8 N Y N 0 -1.15 -1.972 0.868
9 C10 C C9 N N N 0 0.729 1.616 2.425
10 N01 N N1 N N N 0 -3.059 3.516 -2.783
11 S02 S S1 N N N 0 -2.899 4.486 -1.451
12 O03 O O1 N N N 0 -4.18 4.539 -0.838
13 C04 C C10 N Y N 0 -1.84 3.647 -0.319
14 C05 C C11 N Y N 0 -2.242 2.45 0.248
15 C06 C C12 N Y N 0 -1.409 1.792 1.137
16 C07 C C13 N Y N 0 -0.178 2.331 1.457
17 C08 C C14 N Y N 0 0.223 3.527 0.89
18 C09 C C15 N Y N 0 -0.606 4.182 -0.002
19 C11 C C16 N Y N 0 1.461 0.512 1.705
20 C12 C C17 N Y N 0 2.716 0.582 1.211
21 N13 N N2 N Y N 0 3.006 -0.618 0.64
22 C14 C C18 N Y N 0 4.203 -0.959 0.016
23 N15 N N3 N Y N 0 4.462 -2.105 -0.529
24 C16 C C19 N Y N 0 5.674 -2.226 -1.075
25 C17 C C20 N N N 0 6.124 -3.461 -1.734
26 O18 O O2 N N N 0 5.302 -4.528 -1.801
27 O19 O O3 N N N 0 7.238 -3.522 -2.217
28 C20 C C21 N Y N 0 6.456 -1.128 -0.978
29 S21 S S2 N Y N 0 5.595 0.103 -0.162
30 N22 N N4 N Y N 0 1.889 -1.45 0.79
31 C23 C C22 N Y N 0 0.96 -0.776 1.434
32 C24 C C23 N Y N 0 -0.385 -1.283 1.803
33 C26 C C24 N Y N 0 -2.413 -2.445 1.22
34 C27 C C25 N N N 0 -3.204 -3.161 0.265
35 C28 C C26 N N N 0 -3.852 -3.747 -0.518
36 C29 C C27 N N N 0 -4.666 -4.483 -1.5
37 C31 C C28 N N N 0 -6.266 -2.772 -2.107
38 C32 C C29 N N N 0 -7.032 -3.813 -1.265
39 C34 C C30 N Y N 0 -2.905 -2.219 2.509
40 C35 C C31 N Y N 0 -2.135 -1.538 3.435
41 F37 F F1 N N N 0 -4.128 -2.676 2.855
42 F42 F F2 N N N 0 -3.446 1.924 -0.066
43 O43 O O4 N N N 0 -2.193 5.642 -1.879
44 H1 H H1 N N N 0 4.655 1.44 1.451
45 H2 H H2 N N N 0 3.322 2.425 2.101
46 H3 H H3 N N N 0 3.274 1.966 -0.91
47 H4 H H4 N N N 0 2.506 4.382 -0.81
48 H5 H H5 N N N 0 2.844 4.414 1.003
49 H6 H H6 N N N 0 5.283 3.876 0.557
50 H7 H H7 N N N 0 4.944 3.844 -1.256
51 H8 H H8 N N N 0 -0.287 -0.538 3.815
52 H9 H H9 N N N 0 -6.328 -5.865 -1.281
53 H10 H H10 N N N 0 -5.924 -4.96 0.205
54 H11 H H11 N N N 0 -4.243 -2.883 -2.93
55 H12 H H12 N N N 0 -5.356 -4.145 -3.548
56 H13 H H13 N N N 0 -0.765 -2.144 -0.126
57 H14 H H14 N N N 0 1.45 2.322 2.837
58 H15 H H15 N N N 0 0.135 1.19 3.233
59 H16 H H16 N N N 0 -2.438 3.602 -3.524
60 H17 H H17 N N N 0 -3.773 2.861 -2.824
61 H18 H H18 N N N 0 -1.722 0.858 1.581
62 H19 H H19 N N N 0 1.185 3.948 1.141
63 H20 H H20 N N N 0 -0.29 5.114 -0.447
64 H21 H H21 N N N 0 5.642 -5.317 -2.244
65 H22 H H22 N N N 0 7.462 -1.041 -1.36
66 H23 H H23 N N N 0 -4.125 -5.357 -1.863
67 H24 H H24 N N N 0 -5.922 -1.951 -1.478
68 H25 H H25 N N N 0 -6.894 -2.395 -2.915
69 H26 H H26 N N N 0 -7.839 -4.249 -1.854
70 H27 H H27 N N N 0 -7.435 -3.344 -0.368
71 H28 H H28 N N N 0 -2.514 -1.373 4.433