Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : P7Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 19


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 N1 C N sing 1.48 N N
2 N1 O1 N O doub 1.22 N N
3 N1 O2 N O sing 1.22 N N
4 C2 C1 C C doub 1.33 N N
5 C1' C2 C C sing 1.48 E N
6 C2' C1' C C sing 1.4 N Y
7 C2' O2' C O sing 1.36 N N
8 C3' C2' C C doub 1.39 N Y
9 C4' C3' C C sing 1.38 N Y
10 C4' C5' C C doub 1.38 N Y
11 C5' C6' C C sing 1.38 N Y
12 C6' C1' C C doub 1.39 N Y
13 C1 H1 C H sing 1.08 N N
14 C2 H2 C H sing 1.08 N N
15 O2' HO2' O H sing 0.97 N N
16 C3' H3' C H sing 1.08 N N
17 C4' H4' C H sing 1.08 N N
18 C5' H5' C H sing 1.08 N N
19 C6' H6' C H sing 1.08 N N