Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P7Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 19


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -1.612 0.541 -0.001
2 N1 N N1 N N N 1 -3.032 0.123 0.001
3 O1 O O1 N N N 0 -3.319 -1.061 0.017
4 C2 C C2 N N N 0 -0.652 -0.374 0.009
5 O2 O O2 N N N -1 -3.914 0.963 -0.013
6 C1' C C1' N Y N 0 0.765 0.043 0.006
7 C2' C C2' N Y N 0 1.782 -0.92 0.016
8 O2' O O2' N N N 0 1.469 -2.242 0.028
9 C3' C C3' N Y N 0 3.108 -0.52 0.014
10 C4' C C4' N Y N 0 3.425 0.826 0.002
11 C5' C C5' N Y N 0 2.423 1.78 -0.007
12 C6' C C6' N Y N 0 1.098 1.397 -0.012
13 H1 H H1 N N N 0 -1.358 1.59 -0.015
14 H2 H H2 N N N 0 -0.906 -1.424 0.018
15 HO2' H HO2' N N N 0 1.38 -2.633 -0.852
16 H3' H H3' N N N 0 3.895 -1.259 0.022
17 H4' H H4' N N N 0 4.46 1.134 0.001
18 H5' H H5' N N N 0 2.68 2.829 -0.015
19 H6' H H6' N N N 0 0.319 2.145 -0.019