data_P7Y
#
_chem_comp.id P7Y
_chem_comp.name 2-[(E)-2-nitroethenyl]phenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H7 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(E)-1-(2'-hydroxyphenyl)-2-nitroethene"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-10-14
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 165.146
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P7Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3P7Y
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P7Y C1 C1 C 0 1 N N N N N N 21.194 12.403 22.188 -1.612 0.541 -0.001 C1 P7Y 1
P7Y N1 N1 N 1 1 N N N N N N 20.882 13.207 23.191 -3.032 0.123 0.001 N1 P7Y 2
P7Y O1 O1 O 0 1 N N N N N N 21.719 14.240 23.522 -3.319 -1.061 0.017 O1 P7Y 3
P7Y C2 C2 C 0 1 N N N N N N 20.384 11.321 21.834 -0.652 -0.374 0.009 C2 P7Y 4
P7Y O2 O2 O -1 1 N N N N N N 19.748 13.068 23.914 -3.914 0.963 -0.013 O2 P7Y 5
P7Y "C1'" "C1'" C 0 1 Y N N N N N 20.638 10.413 20.783 0.765 0.043 0.006 "C1'" P7Y 6
P7Y "C2'" "C2'" C 0 1 Y N N N N N 19.921 9.182 20.687 1.782 -0.920 0.016 "C2'" P7Y 7
P7Y "O2'" "O2'" O 0 1 N N N N N N 19.060 8.780 21.599 1.469 -2.242 0.028 "O2'" P7Y 8
P7Y "C3'" "C3'" C 0 1 Y N N N N N 20.112 8.296 19.653 3.108 -0.520 0.014 "C3'" P7Y 9
P7Y "C4'" "C4'" C 0 1 Y N N N N N 21.016 8.605 18.659 3.425 0.826 0.002 "C4'" P7Y 10
P7Y "C5'" "C5'" C 0 1 Y N N N N N 21.708 9.814 18.705 2.423 1.780 -0.007 "C5'" P7Y 11
P7Y "C6'" "C6'" C 0 1 Y N N N N N 21.538 10.712 19.760 1.098 1.397 -0.012 "C6'" P7Y 12
P7Y H1 H1 H 0 1 N N N N N N 22.099 12.588 21.628 -1.358 1.590 -0.015 H1 P7Y 13
P7Y H2 H2 H 0 1 N N N N N N 19.486 11.166 22.414 -0.906 -1.424 0.018 H2 P7Y 14
P7Y "HO2'" "HO2'" H 0 0 N N N N N N 18.697 7.940 21.344 1.380 -2.633 -0.852 "HO2'" P7Y 15
P7Y "H3'" "H3'" H 0 1 N N N N N N 19.560 7.368 19.620 3.895 -1.259 0.022 "H3'" P7Y 16
P7Y "H4'" "H4'" H 0 1 N N N N N N 21.187 7.913 17.848 4.460 1.134 0.001 "H4'" P7Y 17
P7Y "H5'" "H5'" H 0 1 N N N N N N 22.391 10.062 17.906 2.680 2.829 -0.015 "H5'" P7Y 18
P7Y "H6'" "H6'" H 0 1 N N N N N N 22.100 11.634 19.784 0.319 2.145 -0.019 "H6'" P7Y 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P7Y C1 N1 SING N N 1
P7Y N1 O1 DOUB N N 2
P7Y N1 O2 SING N N 3
P7Y C2 C1 DOUB N N 4
P7Y "C1'" C2 SING N E 5
P7Y "C2'" "C1'" SING Y N 6
P7Y "C2'" "O2'" SING N N 7
P7Y "C3'" "C2'" DOUB Y N 8
P7Y "C4'" "C3'" SING Y N 9
P7Y "C4'" "C5'" DOUB Y N 10
P7Y "C5'" "C6'" SING Y N 11
P7Y "C6'" "C1'" DOUB Y N 12
P7Y C1 H1 SING N N 13
P7Y C2 H2 SING N N 14
P7Y "O2'" "HO2'" SING N N 15
P7Y "C3'" "H3'" SING N N 16
P7Y "C4'" "H4'" SING N N 17
P7Y "C5'" "H5'" SING N N 18
P7Y "C6'" "H6'" SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P7Y SMILES ACDLabs 12.01 "[O-][N+](=O)/C=C/c1ccccc1O"
P7Y SMILES_CANONICAL CACTVS 3.370 Oc1ccccc1\C=C\[N+]([O-])=O
P7Y SMILES CACTVS 3.370 Oc1ccccc1C=C[N+]([O-])=O
P7Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc(c(c1)/C=C/[N+](=O)[O-])O
P7Y SMILES "OpenEye OEToolkits" 1.7.0 c1ccc(c(c1)C=C[N+](=O)[O-])O
P7Y InChI InChI 1.03 InChI=1S/C8H7NO3/c10-8-4-2-1-3-7(8)5-6-9(11)12/h1-6,10H/b6-5+
P7Y InChIKey InChI 1.03 PMDYAIGGZBRBFX-AATRIKPKSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P7Y "SYSTEMATIC NAME" ACDLabs 12.01 2-[(E)-2-nitroethenyl]phenol
P7Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 2-[(E)-2-nitroethenyl]phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P7Y 'Create component' 2010-10-14 RCSB
P7Y 'Modify aromatic_flag' 2011-06-04 RCSB
P7Y 'Modify descriptor' 2011-06-04 RCSB
P7Y 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id P7Y
_pdbx_chem_comp_synonyms.name "(E)-1-(2'-hydroxyphenyl)-2-nitroethene"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id P7Y
_pdbe_chem_comp_synonyms.name "(E)-1-(2'-hydroxyphenyl)-2-nitroethene"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P7Y C1 C 7.702 1.500 1
P7Y N1 N 7.702 3.000 2
P7Y O1 O 9.002 3.750 3
P7Y C2 C 6.404 0.750 4
P7Y O2 O 6.404 3.750 5
P7Y "C1'" C 6.404 -0.750 6
P7Y "C2'" C 5.104 -1.500 7
P7Y "O2'" O 3.805 -0.750 8
P7Y "C3'" C 5.104 -3.000 9
P7Y "C4'" C 6.404 -3.750 10
P7Y "C5'" C 7.702 -3.000 11
P7Y "C6'" C 7.702 -1.500 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P7Y C1 N1 SINGLE ENDUPRIGHT 1
P7Y N1 O1 DOUBLE NONE 2
P7Y N1 O2 SINGLE NONE 3
P7Y C2 C1 DOUBLE NONE 4
P7Y "C1'" C2 SINGLE ENDUPRIGHT 5
P7Y "C2'" "C1'" DOUBLE NONE 6
P7Y "C2'" "O2'" SINGLE NONE 7
P7Y "C3'" "C2'" SINGLE NONE 8
P7Y "C4'" "C3'" DOUBLE NONE 9
P7Y "C4'" "C5'" SINGLE NONE 10
P7Y "C5'" "C6'" DOUBLE NONE 11
P7Y "C6'" "C1'" SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
P7Y MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
P7Y phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
P7Y "C1'" S1 1
P7Y "C2'" S1 1
P7Y "C3'" S1 1
P7Y "C4'" S1 1
P7Y "C5'" S1 1
P7Y "C6'" S1 1
P7Y "C1'" F1 1
P7Y "C2'" F1 1
P7Y "C3'" F1 1
P7Y "C4'" F1 1
P7Y "C5'" F1 1
P7Y "C6'" F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id P7Y
_pdbe_chem_comp_rdkit_properties.exactmw 165.043
_pdbe_chem_comp_rdkit_properties.amw 165.148
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 78.840
_pdbe_chem_comp_rdkit_properties.tpsa 63.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.122
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.259
_pdbe_chem_comp_rdkit_properties.chi0v 5.672
_pdbe_chem_comp_rdkit_properties.chi1v 2.793
_pdbe_chem_comp_rdkit_properties.chi2v 0.925
_pdbe_chem_comp_rdkit_properties.chi3v 0.925
_pdbe_chem_comp_rdkit_properties.chi4v 0.491
_pdbe_chem_comp_rdkit_properties.chi0n 12.672
_pdbe_chem_comp_rdkit_properties.chi1n 6.201
_pdbe_chem_comp_rdkit_properties.chi2n 0.925
_pdbe_chem_comp_rdkit_properties.chi3n 0.925
_pdbe_chem_comp_rdkit_properties.chi4n 0.491
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.840
_pdbe_chem_comp_rdkit_properties.kappa1 2.895
_pdbe_chem_comp_rdkit_properties.kappa2 3.522
_pdbe_chem_comp_rdkit_properties.kappa3 2.086
_pdbe_chem_comp_rdkit_properties.Phi 0.850
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
P7Y UniChem ZINC ZINC000001688684
P7Y UniChem ACTor 3156-43-2
P7Y UniChem CCDC MUZPII
P7Y UniChem PubChem 5824057
P7Y UniChem SureChEMBL SCHEMBL6872640
P7Y UniChem 'PubChem TPHARMA' 16496054
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P7Y C1 2.260 0.049 0.396 ETKDGv3 1
P7Y N1 3.648 -0.279 0.262 ETKDGv3 2
P7Y O1 4.484 0.273 1.005 ETKDGv3 3
P7Y C2 1.330 -0.495 -0.399 ETKDGv3 4
P7Y O2 4.078 -1.204 -0.663 ETKDGv3 5
P7Y "C1'" -0.108 -0.150 -0.314 ETKDGv3 6
P7Y "C2'" -0.764 -0.006 0.861 ETKDGv3 7
P7Y "O2'" -0.114 -0.208 2.077 ETKDGv3 8
P7Y "C3'" -2.206 0.341 0.861 ETKDGv3 9
P7Y "C4'" -2.869 0.477 -0.293 ETKDGv3 10
P7Y "C5'" -2.167 0.280 -1.575 ETKDGv3 11
P7Y "C6'" -0.863 -0.021 -1.586 ETKDGv3 12
P7Y H1 1.974 0.780 1.142 ETKDGv3 13
P7Y H2 1.638 -1.151 -1.204 ETKDGv3 14
P7Y "HO2'" -0.603 -0.110 2.959 ETKDGv3 15
P7Y "H3'" -2.729 0.478 1.799 ETKDGv3 16
P7Y "H4'" -3.922 0.726 -0.289 ETKDGv3 17
P7Y "H5'" -2.710 0.380 -2.506 ETKDGv3 18
P7Y "H6'" -0.358 -0.162 -2.533 ETKDGv3 19
#