Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P7A    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O doub 1.22 N N
2 C1 N2 C N sing 1.35 N N
3 C1 N9 C N sing 1.35 N N
4 N1 C2 N C sing 1.4 N N
5 N1 C20 N C sing 1.46 N N
6 N1 C24 N C sing 1.46 N N
7 S1 C2 S C sing 1.76 N Y
8 S1 C13 S C sing 1.76 N Y
9 C2 C10 C C doub 1.34 N Y
10 N2 C3 N C sing 1.4 N N
11 O2 S2 O S doub 1.42 N N
12 S2 O3 S O doub 1.42 N N
13 S2 C21 S C sing 1.82 N N
14 S2 C23 S C sing 1.82 N N
15 C3 C4 C C doub 1.41 N Y
16 C3 C8 C C sing 1.38 N Y
17 C4 C5 C C sing 1.42 N Y
18 C4 C31 C C sing 1.4 N Y
19 C5 C6 C C doub 1.4 N Y
20 C5 C34 C C sing 1.41 N Y
21 C6 C7 C C sing 1.36 N Y
22 C7 C8 C C doub 1.39 N Y
23 N9 C10 N C sing 1.41 N N
24 C10 C14 C C sing 1.39 N Y
25 C13 C14 C C doub 1.33 N Y
26 C13 C16 C C sing 1.51 N N
27 C16 C17 C C sing 1.53 N N
28 C16 C18 C C sing 1.53 N N
29 C16 C19 C C sing 1.53 N N
30 C20 C21 C C sing 1.53 N N
31 C23 C24 C C sing 1.53 N N
32 C31 C32 C C doub 1.36 N Y
33 C32 C33 C C sing 1.39 N Y
34 C33 C34 C C doub 1.36 N Y
35 N2 HN2 N H sing 0.97 N N
36 C6 H6 C H sing 1.08 N N
37 C7 H7 C H sing 1.08 N N
38 C8 H8 C H sing 1.08 N N
39 N9 HN9 N H sing 0.97 N N
40 C14 H14 C H sing 1.08 N N
41 C17 H17 C H sing 1.09 N N
42 C17 H17A C H sing 1.09 N N
43 C17 H17B C H sing 1.09 N N
44 C18 H18 C H sing 1.09 N N
45 C18 H18A C H sing 1.09 N N
46 C18 H18B C H sing 1.09 N N
47 C19 H19 C H sing 1.09 N N
48 C19 H19A C H sing 1.09 N N
49 C19 H19B C H sing 1.09 N N
50 C20 H20 C H sing 1.09 N N
51 C20 H20A C H sing 1.09 N N
52 C21 H21 C H sing 1.09 N N
53 C21 H21A C H sing 1.09 N N
54 C23 H23 C H sing 1.09 N N
55 C23 H23A C H sing 1.09 N N
56 C24 H24 C H sing 1.09 N N
57 C24 H24A C H sing 1.09 N N
58 C31 H31 C H sing 1.08 N N
59 C32 H32 C H sing 1.08 N N
60 C33 H33 C H sing 1.08 N N
61 C34 H34 C H sing 1.08 N N