data_P7A
#
_chem_comp.id P7A
_chem_comp.name 1-[5-tert-butyl-2-(1,1-dioxidothiomorpholin-4-yl)thiophen-3-yl]-3-naphthalen-1-ylurea
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H27 N3 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-10-13
_chem_comp.pdbx_modified_date 2011-10-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 457.609
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P7A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3P7A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P7A C1 C1 C 0 1 N N N N N N 49.893 32.282 -18.567 1.419 -0.235 -0.252 C1 P7A 1
P7A N1 N1 N 0 1 N N N N N N 48.564 31.123 -14.721 -2.682 0.739 0.314 N1 P7A 2
P7A O1 O1 O 0 1 N N N N N N 48.925 32.748 -19.178 1.673 -1.390 -0.535 O1 P7A 3
P7A S1 S1 S 0 1 Y N N N N N 46.697 29.387 -15.791 -3.099 -2.039 0.371 S1 P7A 4
P7A C2 C2 C 0 1 Y N N N N N 48.150 30.444 -15.892 -2.156 -0.558 0.271 C2 P7A 5
P7A N2 N2 N 0 1 N N N N N N 51.123 32.750 -18.793 2.400 0.688 -0.241 N2 P7A 6
P7A O2 O2 O 0 1 N N N N N N 49.851 32.934 -10.548 -4.464 4.592 0.223 O2 P7A 7
P7A S2 S2 S 0 1 N N N N N N 49.595 31.687 -11.767 -4.364 3.259 -0.259 S2 P7A 8
P7A C3 C3 C 0 1 Y N N N N N 51.476 33.872 -19.586 3.724 0.302 -0.458 C3 P7A 9
P7A O3 O3 O 0 1 N N N N N N 50.137 30.104 -11.211 -5.226 2.830 -1.304 O3 P7A 10
P7A C4 C4 C 0 1 Y N N N N N 52.712 33.891 -20.365 4.784 1.047 0.103 C4 P7A 11
P7A C5 C5 C 0 1 Y N N N N N 53.159 35.133 -20.992 6.120 0.636 -0.130 C5 P7A 12
P7A C6 C6 C 0 1 Y N N N N N 52.346 36.335 -20.877 6.366 -0.504 -0.913 C6 P7A 13
P7A C7 C7 C 0 1 Y N N N N N 51.098 36.313 -20.131 5.325 -1.204 -1.441 C7 P7A 14
P7A C8 C8 C 0 1 Y N N N N N 50.673 35.083 -19.479 4.008 -0.814 -1.215 C8 P7A 15
P7A N9 N9 N 0 1 N N N N N N 49.734 31.298 -17.671 0.154 0.123 0.045 N9 P7A 16
P7A C10 C10 C 0 1 Y N N N N N 48.557 30.607 -17.285 -0.853 -0.863 0.147 C10 P7A 17
P7A C13 C13 C 0 1 Y N N N N N 46.578 29.186 -17.595 -1.643 -3.015 0.237 C13 P7A 18
P7A C14 C14 C 0 1 Y N N N N N 47.678 29.914 -18.223 -0.576 -2.223 0.129 C14 P7A 19
P7A C16 C16 C 0 1 N N N N N N 45.481 28.536 -18.311 -1.606 -4.522 0.243 C16 P7A 20
P7A C17 C17 C 0 1 N N N N N N 44.946 29.477 -19.371 -0.756 -5.006 1.420 C17 P7A 21
P7A C18 C18 C 0 1 N N N N N N 44.310 28.169 -17.420 -3.029 -5.067 0.384 C18 P7A 22
P7A C19 C19 C 0 1 N N N N N N 45.949 27.265 -19.010 -0.995 -5.023 -1.067 C19 P7A 23
P7A C20 C20 C 0 1 N N N N N N 50.015 31.209 -14.482 -4.096 0.719 0.696 C20 P7A 24
P7A C21 C21 C 0 1 N N N N N N 50.362 32.164 -13.345 -4.534 2.117 1.145 C21 P7A 25
P7A C23 C23 C 0 1 N N N N N N 47.890 31.605 -12.358 -2.642 2.947 -0.754 C23 P7A 26
P7A C24 C24 C 0 1 N N N N N N 47.757 30.681 -13.561 -2.455 1.439 -0.952 C24 P7A 27
P7A C31 C31 C 0 1 Y N N N N N 53.479 32.678 -20.620 4.539 2.187 0.884 C31 P7A 28
P7A C32 C32 C 0 1 Y N N N N N 54.662 32.716 -21.475 5.586 2.881 1.409 C32 P7A 29
P7A C33 C33 C 0 1 Y N N N N N 55.109 33.973 -22.066 6.900 2.478 1.181 C33 P7A 30
P7A C34 C34 C 0 1 Y N N N N N 54.357 35.199 -21.821 7.175 1.378 0.429 C34 P7A 31
P7A HN2 HN2 H 0 1 N N N N N N 51.876 32.257 -18.357 2.187 1.621 -0.083 HN2 P7A 32
P7A H6 H6 H 0 1 N N N N N N 52.672 37.250 -21.349 7.381 -0.825 -1.096 H6 P7A 33
P7A H7 H7 H 0 1 N N N N N N 50.491 37.203 -20.061 5.523 -2.079 -2.043 H7 P7A 34
P7A H8 H8 H 0 1 N N N N N N 49.755 35.068 -18.911 3.200 -1.389 -1.642 H8 P7A 35
P7A HN9 HN9 H 0 1 N N N N N N 50.570 31.008 -17.205 -0.065 1.057 0.188 HN9 P7A 36
P7A H14 H14 H 0 1 N N N N N N 47.829 29.938 -19.292 0.428 -2.610 0.034 H14 P7A 37
P7A H17 H17 H 0 1 N N N N N N 44.121 28.990 -19.911 -1.190 -4.649 2.353 H17 P7A 38
P7A H17A H17A H 0 0 N N N N N N 44.579 30.397 -18.893 -0.729 -6.095 1.424 H17A P7A 39
P7A H17B H17B H 0 0 N N N N N N 45.750 29.727 -20.079 0.258 -4.618 1.319 H17B P7A 40
P7A H18 H18 H 0 1 N N N N N N 43.527 27.687 -18.023 -3.634 -4.722 -0.454 H18 P7A 41
P7A H18A H18A H 0 0 N N N N N N 44.649 27.475 -16.637 -3.002 -6.156 0.389 H18A P7A 42
P7A H18B H18B H 0 0 N N N N N N 43.905 29.079 -16.954 -3.463 -4.710 1.318 H18B P7A 43
P7A H19 H19 H 0 1 N N N N N N 45.102 26.803 -19.537 0.018 -4.635 -1.168 H19 P7A 44
P7A H19A H19A H 0 0 N N N N N N 46.739 27.514 -19.734 -0.968 -6.112 -1.062 H19A P7A 45
P7A H19B H19B H 0 0 N N N N N N 46.345 26.561 -18.263 -1.601 -4.678 -1.905 H19B P7A 46
P7A H20 H20 H 0 1 N N N N N N 50.386 30.207 -14.221 -4.698 0.408 -0.158 H20 P7A 47
P7A H20A H20A H 0 0 N N N N N N 50.499 31.570 -15.401 -4.240 0.014 1.515 H20A P7A 48
P7A H21 H21 H 0 1 N N N N N N 50.005 33.169 -13.615 -3.902 2.452 1.967 H21 P7A 49
P7A H21A H21A H 0 0 N N N N N N 51.454 32.165 -13.214 -5.575 2.088 1.468 H21A P7A 50
P7A H23 H23 H 0 1 N N N N N N 47.252 31.224 -11.547 -2.430 3.467 -1.689 H23 P7A 51
P7A H23A H23A H 0 0 N N N N N N 47.568 32.615 -12.651 -1.968 3.300 0.025 H23A P7A 52
P7A H24 H24 H 0 1 N N N N N N 46.700 30.658 -13.864 -1.439 1.243 -1.297 H24 P7A 53
P7A H24A H24A H 0 0 N N N N N N 48.097 29.677 -13.265 -3.164 1.081 -1.697 H24A P7A 54
P7A H31 H31 H 0 1 N N N N N N 53.170 31.744 -20.173 3.526 2.511 1.069 H31 P7A 55
P7A H32 H32 H 0 1 N N N N N N 55.210 31.807 -21.672 5.395 3.758 2.010 H32 P7A 56
P7A H33 H33 H 0 1 N N N N N N 55.995 33.996 -22.684 7.713 3.047 1.609 H33 P7A 57
P7A H34 H34 H 0 1 N N N N N N 54.681 36.138 -22.246 8.198 1.077 0.260 H34 P7A 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P7A C1 O1 DOUB N N 1
P7A C1 N2 SING N N 2
P7A C1 N9 SING N N 3
P7A N1 C2 SING N N 4
P7A N1 C20 SING N N 5
P7A N1 C24 SING N N 6
P7A S1 C2 SING Y N 7
P7A S1 C13 SING Y N 8
P7A C2 C10 DOUB Y N 9
P7A N2 C3 SING N N 10
P7A O2 S2 DOUB N N 11
P7A S2 O3 DOUB N N 12
P7A S2 C21 SING N N 13
P7A S2 C23 SING N N 14
P7A C3 C4 DOUB Y N 15
P7A C3 C8 SING Y N 16
P7A C4 C5 SING Y N 17
P7A C4 C31 SING Y N 18
P7A C5 C6 DOUB Y N 19
P7A C5 C34 SING Y N 20
P7A C6 C7 SING Y N 21
P7A C7 C8 DOUB Y N 22
P7A N9 C10 SING N N 23
P7A C10 C14 SING Y N 24
P7A C13 C14 DOUB Y N 25
P7A C13 C16 SING N N 26
P7A C16 C17 SING N N 27
P7A C16 C18 SING N N 28
P7A C16 C19 SING N N 29
P7A C20 C21 SING N N 30
P7A C23 C24 SING N N 31
P7A C31 C32 DOUB Y N 32
P7A C32 C33 SING Y N 33
P7A C33 C34 DOUB Y N 34
P7A N2 HN2 SING N N 35
P7A C6 H6 SING N N 36
P7A C7 H7 SING N N 37
P7A C8 H8 SING N N 38
P7A N9 HN9 SING N N 39
P7A C14 H14 SING N N 40
P7A C17 H17 SING N N 41
P7A C17 H17A SING N N 42
P7A C17 H17B SING N N 43
P7A C18 H18 SING N N 44
P7A C18 H18A SING N N 45
P7A C18 H18B SING N N 46
P7A C19 H19 SING N N 47
P7A C19 H19A SING N N 48
P7A C19 H19B SING N N 49
P7A C20 H20 SING N N 50
P7A C20 H20A SING N N 51
P7A C21 H21 SING N N 52
P7A C21 H21A SING N N 53
P7A C23 H23 SING N N 54
P7A C23 H23A SING N N 55
P7A C24 H24 SING N N 56
P7A C24 H24A SING N N 57
P7A C31 H31 SING N N 58
P7A C32 H32 SING N N 59
P7A C33 H33 SING N N 60
P7A C34 H34 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P7A SMILES ACDLabs 12.01 O=S4(=O)CCN(c1sc(cc1NC(=O)Nc3c2ccccc2ccc3)C(C)(C)C)CC4
P7A SMILES_CANONICAL CACTVS 3.370 CC(C)(C)c1sc(N2CC[S](=O)(=O)CC2)c(NC(=O)Nc3cccc4ccccc34)c1
P7A SMILES CACTVS 3.370 CC(C)(C)c1sc(N2CC[S](=O)(=O)CC2)c(NC(=O)Nc3cccc4ccccc34)c1
P7A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CC(C)(C)c1cc(c(s1)N2CCS(=O)(=O)CC2)NC(=O)Nc3cccc4c3cccc4
P7A SMILES "OpenEye OEToolkits" 1.7.0 CC(C)(C)c1cc(c(s1)N2CCS(=O)(=O)CC2)NC(=O)Nc3cccc4c3cccc4
P7A InChI InChI 1.03 InChI=1S/C23H27N3O3S2/c1-23(2,3)20-15-19(21(30-20)26-11-13-31(28,29)14-12-26)25-22(27)24-18-10-6-8-16-7-4-5-9-17(16)18/h4-10,15H,11-14H2,1-3H3,(H2,24,25,27)
P7A InChIKey InChI 1.03 VRPGNWGNMYKKMF-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P7A "SYSTEMATIC NAME" ACDLabs 12.01 1-[5-tert-butyl-2-(1,1-dioxidothiomorpholin-4-yl)thiophen-3-yl]-3-naphthalen-1-ylurea
P7A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 1-[5-tert-butyl-2-(1,1-dioxo-1,4-thiazinan-4-yl)thiophen-3-yl]-3-naphthalen-1-yl-urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P7A 'Create component' 2010-10-13 RCSB
P7A 'Modify aromatic_flag' 2011-06-04 RCSB
P7A 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P7A C1 C 9.657 1.439 1
P7A N1 N 9.316 -3.307 2
P7A O1 O 8.357 2.189 3
P7A S1 S 6.734 -2.615 4
P7A C2 C 8.201 -2.303 5
P7A N2 N 10.956 2.189 6
P7A O2 O 12.008 -6.741 7
P7A S2 S 11.545 -5.314 8
P7A C3 C 10.956 3.689 9
P7A O3 O 13.012 -5.626 10
P7A C4 C 12.255 4.439 11
P7A C5 C 12.255 5.939 12
P7A C6 C 10.956 6.689 13
P7A C7 C 9.657 5.939 14
P7A C8 C 9.657 4.439 15
P7A N9 N 9.657 -0.061 16
P7A C10 C 8.357 -0.811 17
P7A C13 C 5.984 -1.316 18
P7A C14 C 6.987 -0.201 19
P7A C16 C 4.492 -1.159 20
P7A C17 C 3.000 -1.002 21
P7A C18 C 4.335 -2.651 22
P7A C19 C 4.649 0.333 23
P7A C20 C 10.742 -2.843 24
P7A C21 C 11.857 -3.847 25
P7A C23 C 10.118 -5.778 26
P7A C24 C 9.004 -4.774 27
P7A C31 C 13.596 3.637 28
P7A C32 C 14.955 4.407 29
P7A C33 C 14.955 5.970 30
P7A C34 C 13.596 6.741 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P7A C1 O1 DOUBLE NONE 1
P7A C1 N2 SINGLE NONE 2
P7A C1 N9 SINGLE NONE 3
P7A N1 C2 SINGLE NONE 4
P7A N1 C20 SINGLE NONE 5
P7A N1 C24 SINGLE NONE 6
P7A S1 C2 SINGLE NONE 7
P7A S1 C13 SINGLE NONE 8
P7A C2 C10 DOUBLE NONE 9
P7A N2 C3 SINGLE NONE 10
P7A O2 S2 DOUBLE NONE 11
P7A S2 O3 DOUBLE NONE 12
P7A S2 C21 SINGLE NONE 13
P7A S2 C23 SINGLE NONE 14
P7A C3 C4 DOUBLE NONE 15
P7A C3 C8 SINGLE NONE 16
P7A C4 C5 SINGLE NONE 17
P7A C4 C31 SINGLE NONE 18
P7A C5 C6 DOUBLE NONE 19
P7A C5 C34 SINGLE NONE 20
P7A C6 C7 SINGLE NONE 21
P7A C7 C8 DOUBLE NONE 22
P7A N9 C10 SINGLE NONE 23
P7A C10 C14 SINGLE NONE 24
P7A C13 C14 DOUBLE NONE 25
P7A C13 C16 SINGLE NONE 26
P7A C16 C17 SINGLE NONE 27
P7A C16 C18 SINGLE NONE 28
P7A C16 C19 SINGLE NONE 29
P7A C20 C21 SINGLE NONE 30
P7A C23 C24 SINGLE NONE 31
P7A C31 C32 DOUBLE NONE 32
P7A C32 C33 SINGLE NONE 33
P7A C33 C34 DOUBLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
P7A MurckoScaffold S1 scaffold O=C(Nc1ccsc1N1CCS(=O)(=O)CC1)Nc1cccc2ccccc12 InChI=1S/C19H19N3O3S2/c23-19(20-16-7-3-5-14-4-1-2-6-15(14)16)21-17-8-11-26-18(17)22-9-12-27(24,25)13-10-22/h1-8,11H,9-10,12-13H2,(H2,20,21,23) DNRFMGCUUOVOTA-UHFFFAOYSA-N
P7A napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
P7A phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
P7A thiophen F3 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
P7A C1 S1 1
P7A N1 S1 1
P7A O1 S1 1
P7A S1 S1 1
P7A C2 S1 1
P7A N2 S1 1
P7A O2 S1 1
P7A S2 S1 1
P7A C3 S1 1
P7A O3 S1 1
P7A C4 S1 1
P7A C5 S1 1
P7A C6 S1 1
P7A C7 S1 1
P7A C8 S1 1
P7A N9 S1 1
P7A C10 S1 1
P7A C13 S1 1
P7A C14 S1 1
P7A C20 S1 1
P7A C21 S1 1
P7A C23 S1 1
P7A C24 S1 1
P7A C31 S1 1
P7A C32 S1 1
P7A C33 S1 1
P7A C34 S1 1
P7A C7 F1 1
P7A C8 F1 1
P7A C3 F1 1
P7A C4 F1 1
P7A C5 F1 1
P7A C6 F1 1
P7A C34 F1 1
P7A C33 F1 1
P7A C32 F1 1
P7A C31 F1 1
P7A C3 F2 1
P7A C4 F2 1
P7A C5 F2 1
P7A C6 F2 1
P7A C7 F2 1
P7A C8 F2 1
P7A C4 F2 2
P7A C5 F2 2
P7A C34 F2 2
P7A C33 F2 2
P7A C32 F2 2
P7A C31 F2 2
P7A C2 F3 1
P7A C10 F3 1
P7A C14 F3 1
P7A C13 F3 1
P7A S1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id P7A
_pdbe_chem_comp_rdkit_properties.exactmw 457.149
_pdbe_chem_comp_rdkit_properties.amw 457.621
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.348
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 224.786
_pdbe_chem_comp_rdkit_properties.tpsa 78.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.453
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.531
_pdbe_chem_comp_rdkit_properties.chi0v 16.516
_pdbe_chem_comp_rdkit_properties.chi1v 10.219
_pdbe_chem_comp_rdkit_properties.chi2v 5.370
_pdbe_chem_comp_rdkit_properties.chi3v 5.370
_pdbe_chem_comp_rdkit_properties.chi4v 3.539
_pdbe_chem_comp_rdkit_properties.chi0n 41.883
_pdbe_chem_comp_rdkit_properties.chi1n 21.314
_pdbe_chem_comp_rdkit_properties.chi2n 3.468
_pdbe_chem_comp_rdkit_properties.chi3n 3.468
_pdbe_chem_comp_rdkit_properties.chi4n 2.195
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.580
_pdbe_chem_comp_rdkit_properties.kappa1 6.261
_pdbe_chem_comp_rdkit_properties.kappa2 8.164
_pdbe_chem_comp_rdkit_properties.kappa3 4.854
_pdbe_chem_comp_rdkit_properties.Phi 1.649
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
P7A UniChem ZINC ZINC000038269617
P7A UniChem SureChEMBL SCHEMBL3553081
P7A UniChem 'PubChem TPHARMA' 16802757
P7A UniChem BindingDb 50359328
P7A UniChem PubChem 11698246
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P7A C1 1.327 -0.232 -0.625 ETKDGv3 1
P7A N1 -1.726 0.831 -0.306 ETKDGv3 2
P7A O1 1.114 0.200 0.541 ETKDGv3 3
P7A S1 -3.091 -1.483 0.629 ETKDGv3 4
P7A C2 -1.757 -0.596 -0.139 ETKDGv3 5
P7A N2 2.554 0.083 -1.298 ETKDGv3 6
P7A O2 -0.826 4.740 -1.211 ETKDGv3 7
P7A S2 -1.955 3.888 -0.703 ETKDGv3 8
P7A C3 3.667 0.679 -0.615 ETKDGv3 9
P7A O3 -3.156 4.750 -0.436 ETKDGv3 10
P7A C4 3.626 1.944 -0.136 ETKDGv3 11
P7A C5 4.799 2.490 0.602 ETKDGv3 12
P7A C6 5.902 1.744 0.761 ETKDGv3 13
P7A C7 5.958 0.381 0.201 ETKDGv3 14
P7A C8 4.904 -0.121 -0.452 ETKDGv3 15
P7A N9 0.362 -1.080 -1.266 ETKDGv3 16
P7A C10 -0.865 -1.462 -0.633 ETKDGv3 17
P7A C13 -2.385 -3.075 0.218 ETKDGv3 18
P7A C14 -1.234 -2.883 -0.441 ETKDGv3 19
P7A C16 -2.983 -4.434 0.556 ETKDGv3 20
P7A C17 -2.001 -5.223 1.445 ETKDGv3 21
P7A C18 -3.248 -5.219 -0.744 ETKDGv3 22
P7A C19 -4.315 -4.272 1.315 ETKDGv3 23
P7A C20 -1.519 1.389 -1.657 ETKDGv3 24
P7A C21 -2.364 2.639 -1.904 ETKDGv3 25
P7A C23 -1.462 3.047 0.787 ETKDGv3 26
P7A C24 -2.122 1.669 0.839 ETKDGv3 27
P7A C31 2.468 2.847 -0.340 ETKDGv3 28
P7A C32 2.471 4.083 0.175 ETKDGv3 29
P7A C33 3.622 4.600 0.948 ETKDGv3 30
P7A C34 4.718 3.859 1.146 ETKDGv3 31
P7A HN2 2.744 -0.386 -2.211 ETKDGv3 32
P7A H6 6.762 2.132 1.295 ETKDGv3 33
P7A H7 6.854 -0.213 0.322 ETKDGv3 34
P7A H8 4.952 -1.125 -0.855 ETKDGv3 35
P7A HN9 0.660 -1.614 -2.113 ETKDGv3 36
P7A H14 -0.611 -3.695 -0.795 ETKDGv3 37
P7A H17 -1.778 -4.655 2.375 ETKDGv3 38
P7A H17A -1.044 -5.412 0.914 ETKDGv3 39
P7A H17B -2.433 -6.206 1.731 ETKDGv3 40
P7A H18 -3.932 -4.649 -1.409 ETKDGv3 41
P7A H18A -3.716 -6.202 -0.521 ETKDGv3 42
P7A H18B -2.303 -5.409 -1.296 ETKDGv3 43
P7A H19 -4.752 -5.264 1.561 ETKDGv3 44
P7A H19A -4.161 -3.719 2.267 ETKDGv3 45
P7A H19B -5.054 -3.716 0.698 ETKDGv3 46
P7A H20 -1.796 0.636 -2.428 ETKDGv3 47
P7A H20A -0.446 1.634 -1.797 ETKDGv3 48
P7A H21 -3.441 2.383 -1.816 ETKDGv3 49
P7A H21A -2.173 3.031 -2.925 ETKDGv3 50
P7A H23 -1.767 3.647 1.669 ETKDGv3 51
P7A H23A -0.358 2.930 0.800 ETKDGv3 52
P7A H24 -3.228 1.778 0.852 ETKDGv3 53
P7A H24A -1.816 1.177 1.788 ETKDGv3 54
P7A H31 1.613 2.528 -0.919 ETKDGv3 55
P7A H32 1.618 4.729 0.017 ETKDGv3 56
P7A H33 3.576 5.603 1.351 ETKDGv3 57
P7A H34 5.546 4.274 1.708 ETKDGv3 58
#