Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P7A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.419 -0.235 -0.252
2 N1 N N1 N N N 0 -2.682 0.739 0.314
3 O1 O O1 N N N 0 1.673 -1.39 -0.535
4 S1 S S1 N Y N 0 -3.099 -2.039 0.371
5 C2 C C2 N Y N 0 -2.156 -0.558 0.271
6 N2 N N2 N N N 0 2.4 0.688 -0.241
7 O2 O O2 N N N 0 -4.464 4.592 0.223
8 S2 S S2 N N N 0 -4.364 3.259 -0.259
9 C3 C C3 N Y N 0 3.724 0.302 -0.458
10 O3 O O3 N N N 0 -5.226 2.83 -1.304
11 C4 C C4 N Y N 0 4.784 1.047 0.103
12 C5 C C5 N Y N 0 6.12 0.636 -0.13
13 C6 C C6 N Y N 0 6.366 -0.504 -0.913
14 C7 C C7 N Y N 0 5.325 -1.204 -1.441
15 C8 C C8 N Y N 0 4.008 -0.814 -1.215
16 N9 N N9 N N N 0 0.154 0.123 0.045
17 C10 C C10 N Y N 0 -0.853 -0.863 0.147
18 C13 C C13 N Y N 0 -1.643 -3.015 0.237
19 C14 C C14 N Y N 0 -0.576 -2.223 0.129
20 C16 C C16 N N N 0 -1.606 -4.522 0.243
21 C17 C C17 N N N 0 -0.756 -5.006 1.42
22 C18 C C18 N N N 0 -3.029 -5.067 0.384
23 C19 C C19 N N N 0 -0.995 -5.023 -1.067
24 C20 C C20 N N N 0 -4.096 0.719 0.696
25 C21 C C21 N N N 0 -4.534 2.117 1.145
26 C23 C C23 N N N 0 -2.642 2.947 -0.754
27 C24 C C24 N N N 0 -2.455 1.439 -0.952
28 C31 C C31 N Y N 0 4.539 2.187 0.884
29 C32 C C32 N Y N 0 5.586 2.881 1.409
30 C33 C C33 N Y N 0 6.9 2.478 1.181
31 C34 C C34 N Y N 0 7.175 1.378 0.429
32 HN2 H HN2 N N N 0 2.187 1.621 -0.083
33 H6 H H6 N N N 0 7.381 -0.825 -1.096
34 H7 H H7 N N N 0 5.523 -2.079 -2.043
35 H8 H H8 N N N 0 3.2 -1.389 -1.642
36 HN9 H HN9 N N N 0 -0.065 1.057 0.188
37 H14 H H14 N N N 0 0.428 -2.61 0.034
38 H17 H H17 N N N 0 -1.19 -4.649 2.353
39 H17A H H17A N N N 0 -0.729 -6.095 1.424
40 H17B H H17B N N N 0 0.258 -4.618 1.319
41 H18 H H18 N N N 0 -3.634 -4.722 -0.454
42 H18A H H18A N N N 0 -3.002 -6.156 0.389
43 H18B H H18B N N N 0 -3.463 -4.71 1.318
44 H19 H H19 N N N 0 0.018 -4.635 -1.168
45 H19A H H19A N N N 0 -0.968 -6.112 -1.062
46 H19B H H19B N N N 0 -1.601 -4.678 -1.905
47 H20 H H20 N N N 0 -4.698 0.408 -0.158
48 H20A H H20A N N N 0 -4.24 0.014 1.515
49 H21 H H21 N N N 0 -3.902 2.452 1.967
50 H21A H H21A N N N 0 -5.575 2.088 1.468
51 H23 H H23 N N N 0 -2.43 3.467 -1.689
52 H23A H H23A N N N 0 -1.968 3.3 0.025
53 H24 H H24 N N N 0 -1.439 1.243 -1.297
54 H24A H H24A N N N 0 -3.164 1.081 -1.697
55 H31 H H31 N N N 0 3.526 2.511 1.069
56 H32 H H32 N N N 0 5.395 3.758 2.01
57 H33 H H33 N N N 0 7.713 3.047 1.609
58 H34 H H34 N N N 0 8.198 1.077 0.26