Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OYW    

Bonds between two atoms of the molecule

Total Number of Bonds: 98


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CL1 C15 CL C sing 1.74 N N
2 C15 C13 C C doub 1.38 N Y
3 C15 C17 C C sing 1.38 N Y
4 C13 C14 C C sing 1.38 N Y
5 C17 C16 C C doub 1.38 N Y
6 O1 P1 O P doub 1.48 N N
7 O3 P1 O P sing 1.61 N N
8 C14 C12 C C doub 1.38 N Y
9 C16 C12 C C sing 1.38 N Y
10 O2 P1 O P sing 1.61 N N
11 P1 O4 P O sing 1.61 N N
12 O10 P2 O P doub 1.48 N N
13 C12 C11 C C sing 1.51 N N
14 O5 C6 O C sing 1.44 N N
15 O5 C9 O C sing 1.44 N N
16 C6 N5 C N sing 1.46 N N
17 C6 C7 C C sing 1.55 N N
18 O14 P3 O P doub 1.48 N N
19 N5 C1 N C sing 1.36 N Y
20 N5 C5 N C sing 1.37 N Y
21 C1 N1 C N doub 1.3 N Y
22 C9 C10 C C sing 1.53 N N
23 C9 C8 C C sing 1.54 N N
24 C5 N2 C N sing 1.34 N N
25 C5 C4 C C doub 1.4 N Y
26 N1 C11 N C sing 1.46 N N
27 N1 C4 N C sing 1.36 N Y
28 N2 C2 N C doub 1.31 N N
29 C10 O9 C O sing 1.43 N N
30 P2 O9 P O sing 1.61 N N
31 P2 O11 P O sing 1.61 N N
32 P2 O12 P O sing 1.61 N N
33 O4 P3 O P sing 1.61 N N
34 O7 C7 O C sing 1.43 N N
35 C4 C3 C C sing 1.42 N N
36 C2 N3 C N sing 1.37 N N
37 C2 N4 C N sing 1.36 N N
38 C3 N4 C N sing 1.35 N N
39 C3 O6 C O doub 1.22 N N
40 P3 O12 P O sing 1.61 N N
41 P3 O13 P O sing 1.61 N N
42 C7 C8 C C sing 1.55 N N
43 C8 O8 C O sing 1.43 N N
44 C1 H1 C H sing 1.08 N N
45 C6 H2 C H sing 1.09 N N
46 C7 H3 C H sing 1.09 N N
47 C8 H4 C H sing 1.09 N N
48 C9 H5 C H sing 1.09 N N
49 C10 H6 C H sing 1.09 N N
50 C10 H7 C H sing 1.09 N N
51 C11 H8 C H sing 1.09 N N
52 C11 H9 C H sing 1.09 N N
53 C13 H10 C H sing 1.08 N N
54 C14 H11 C H sing 1.08 N N
55 C16 H12 C H sing 1.08 N N
56 C17 H13 C H sing 1.08 N N
57 N3 H14 N H sing 0.97 N N
58 N3 H15 N H sing 0.97 N N
59 O2 H17 O H sing 0.97 N N
60 O7 H19 O H sing 0.97 N N
61 O8 H20 O H sing 0.97 N N
62 O11 H21 O H sing 0.97 N N
63 O13 H22 O H sing 0.97 N N
64 O15 C18 O C sing 1.44 N N
65 C18 C19 C C sing 1.55 N N
66 C19 C20 C C sing 1.55 N N
67 C20 C21 C C sing 1.54 N N
68 C21 O15 C O sing 1.44 N N
69 C22 O3 C O sing 1.43 N N
70 O16 C20 O C sing 1.43 N N
71 O17 C19 O C sing 1.43 N N
72 C21 C22 C C sing 1.53 N N
73 C18 H23 C H sing 1.09 N N
74 C19 H24 C H sing 1.09 N N
75 C20 H25 C H sing 1.09 N N
76 C21 H26 C H sing 1.09 N N
77 C22 H27 C H sing 1.09 N N
78 C22 H28 C H sing 1.09 N N
79 O16 H29 O H sing 0.97 N N
80 O17 H30 O H sing 0.97 N N
81 N6 C18 N C sing 1.46 N N
82 N7 C23 N C sing 1.36 N Y
83 C23 C24 C C doub 1.4 N Y
84 C24 N6 C N sing 1.37 N Y
85 N6 C25 N C sing 1.36 N Y
86 C25 N7 C N doub 1.3 N Y
87 N8 C26 N C sing 1.35 N N
88 C27 N9 C N doub 1.31 N N
89 N9 C24 N C sing 1.34 N N
90 C23 C26 C C sing 1.41 N N
91 N8 C27 N C sing 1.36 N N
92 N10 C27 N C sing 1.37 N N
93 C25 H18 C H sing 1.08 N N
94 N8 H31 N H sing 0.97 N N
95 N10 H34 N H sing 0.97 N N
96 N10 H35 N H sing 0.97 N N
97 N4 H16 N H sing 0.97 N N
98 C26 O18 C O doub 1.22 N N