Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OYW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 92


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C CAZ N Y N 0 6.314 0.048 -0.148
2 C2 C CBE N N N 0 9.037 -1.19 3.144
3 C3 C CBG N N N 0 8.77 -2.239 1.053
4 C4 C CBH N Y N 0 7.809 -1.253 0.726
5 C5 C CBI N Y N 0 7.517 -0.263 1.671
6 C6 C CBK R N N 0 5.947 1.717 1.71
7 C7 C CBM R N N 0 6.827 2.975 1.496
8 C8 C CBO S N N 0 5.789 4.119 1.601
9 C9 C CBP R N N 0 4.439 3.431 1.319
10 C10 C CBQ N N N 0 3.763 4.086 0.113
11 C11 C CBZ N N N 0 7.046 -1.798 -1.597
12 C12 C CCA N Y N 0 6.106 -2.966 -1.443
13 C13 C CCB N Y N 0 3.915 -3.907 -1.658
14 C14 C CCC N Y N 0 4.777 -2.836 -1.8
15 C15 C CCD N Y N 0 4.383 -5.109 -1.159
16 C16 C CCE N Y N 0 6.575 -4.169 -0.949
17 C17 C CCF N Y N 0 5.714 -5.241 -0.807
18 N1 N NBA N Y N 1 7.046 -1.005 -0.366
19 N2 N NBC N N N 0 8.146 -0.269 2.853
20 N3 N NBD N N N 0 9.656 -1.155 4.369
21 N4 N NBF N N N 0 9.363 -2.18 2.266
22 N5 N NBJ N Y N 0 6.57 0.541 1.098
23 O1 O O5' N N N 0 -3.586 1.015 -3.58
24 O2 O OAU N N N 0 -1.824 -0.772 -3.308
25 O3 O OAV N N N 0 -3.692 -0.403 -1.495
26 O4 O OAX N N N 0 -1.81 1.402 -1.829
27 O5 O OAY N N N 0 4.715 2.049 1.034
28 O6 O OBB N N N 0 9.055 -3.12 0.26
29 O7 O OBL N N N 0 7.815 3.087 2.522
30 O8 O OBN N N N 0 5.799 4.684 2.913
31 O9 O OBR N N N 0 2.464 3.521 -0.07
32 O10 O OBS N N N 0 2.153 3.839 -2.554
33 O11 O OBT N N N 0 1.039 5.512 -1.028
34 O12 O OBV N N N 0 0.154 3.045 -1.233
35 O13 O OBW N N N 0 -1.982 3.945 -2.473
36 O14 O OBY N N N 0 -0.345 2.406 -3.623
37 P1 P PAW N N N 0 -2.746 0.326 -2.575
38 P2 P PBU N N N 0 1.467 3.976 -1.25
39 P3 P PBX N N N 0 -0.982 2.693 -2.318
40 CL1 CL CL1 N N N 0 3.3 -6.455 -0.979
41 H1 H H1 N N N 0 5.611 0.472 -0.851
42 H2 H H2 N N N 0 5.772 1.548 2.772
43 H3 H H3 N N N 0 7.293 2.961 0.51
44 H4 H H4 N N N 0 5.991 4.887 0.854
45 H5 H H5 N N N 0 3.794 3.51 2.194
46 H6 H H6 N N N 0 3.673 5.159 0.285
47 H7 H H7 N N N 0 4.364 3.911 -0.78
48 H8 H H8 N N N 0 8.053 -2.165 -1.793
49 H9 H H9 N N N 0 6.718 -1.175 -2.43
50 H10 H H10 N N N 0 2.877 -3.805 -1.937
51 H11 H H11 N N N 0 4.412 -1.897 -2.19
52 H12 H H12 N N N 0 7.615 -4.271 -0.674
53 H13 H H13 N N N 0 6.08 -6.179 -0.418
54 H14 H H14 N N N 0 10.315 -1.828 4.598
55 H15 H H15 N N N 0 9.434 -0.456 5.004
56 H17 H H17 N N N 0 -1.246 -1.263 -2.708
57 H19 H H19 N N N 0 8.391 3.859 2.432
58 H20 H H20 N N N 0 6.644 5.079 3.165
59 H21 H H21 N N N 0 0.584 5.677 -0.191
60 H22 H H22 N N N 0 -2.435 4.19 -1.655
61 O15 O O1 N N N 0 -6.153 -0.762 0.012
62 C18 C C2 N N N 0 -7.339 -1.34 0.597
63 C19 C C3 N N N 0 -7.786 -2.388 -0.454
64 C20 C C4 N N N 0 -6.431 -2.937 -0.962
65 C21 C C5 N N N 0 -5.416 -1.837 -0.594
66 C22 C C6 N N N 0 -4.71 -1.338 -1.857
67 O16 O O2 N N N 0 -6.105 -4.16 -0.297
68 O17 O O3 N N N 0 -8.559 -3.424 0.156
69 H23 H H23 N N N 0 -7.102 -1.824 1.545
70 H24 H H24 N N N 0 -8.342 -1.915 -1.263
71 H25 H H25 N N N 0 -6.459 -3.085 -2.041
72 H26 H H26 N N N 0 -4.684 -2.229 0.112
73 H27 H H27 N N N 0 -5.435 -0.851 -2.509
74 H28 H H28 N N N 0 -4.26 -2.182 -2.379
75 H29 H H29 N N N 0 -6.744 -4.871 -0.447
76 H30 H H30 N N N 0 -8.862 -4.104 -0.461
77 N6 N N1 N Y N 0 -8.374 -0.32 0.781
78 N7 N N2 N Y N 0 -9.519 1.517 0.513
79 C23 C C1 N Y N 0 -10.133 0.815 1.497
80 C24 C C7 N Y N 0 -9.405 -0.366 1.68
81 C25 C C9 N Y N 0 -8.483 0.853 0.092
82 N8 N N3 N N N 0 -11.612 0.099 3.212
83 C26 C C10 N N N 0 -11.274 1.039 2.301
84 C27 C C8 N N N 0 -10.858 -1.029 3.349
85 N9 N N4 N N N 0 -9.797 -1.25 2.605
86 N10 N N5 N N N 0 -11.225 -1.966 4.282
87 H18 H H18 N N N 0 -7.81 1.18 -0.687
88 H31 H H31 N N N 0 -12.391 0.23 3.775
89 H34 H H34 N N N 0 -12.01 -1.821 4.833
90 H35 H H35 N N N 0 -10.698 -2.773 4.391
91 H16 H H16 N N N 0 10.025 -2.845 2.512
92 O18 O O18 N N N 0 -11.938 2.054 2.177