data_OYW
#
_chem_comp.id OYW
_chem_comp.name "4-Cl-Bn7GpppG mRNA 5' cap analog"
_chem_comp.type "RNA linking"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C27 H33 Cl N10 O18 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
"[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(4-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2020-04-08
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 913.981
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OYW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6YLV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OYW C1 CAZ C 0 1 Y N N N N N -53.134 85.988 17.984 6.314 0.048 -0.148 C1 OYW 1
OYW C2 CBE C 0 1 N N N N N N -56.844 88.313 18.611 9.037 -1.190 3.144 C2 OYW 2
OYW C3 CBG C 0 1 N N N N N N -56.529 86.025 18.760 8.770 -2.239 1.053 C3 OYW 3
OYW C4 CBH C 0 1 Y N N N N N -55.235 86.156 18.450 7.809 -1.253 0.726 C4 OYW 4
OYW C5 CBI C 0 1 Y N N N N N -54.753 87.380 18.232 7.517 -0.263 1.671 C5 OYW 5
OYW C6 CBK C 0 1 N N R N N N -52.574 88.405 17.622 5.947 1.717 1.710 C6 OYW 6
OYW C7 CBM C 0 1 N N R N N N -52.273 89.255 18.866 6.827 2.975 1.496 C7 OYW 7
OYW C8 CBO C 0 1 N N S N N N -51.090 88.444 19.353 5.789 4.119 1.601 C8 OYW 8
OYW C9 CBP C 0 1 N N R N N N -50.283 88.311 18.051 4.439 3.431 1.319 C9 OYW 9
OYW C10 CBQ C 0 1 N N N N N N -49.157 87.301 18.301 3.763 4.086 0.113 C10 OYW 10
OYW C11 CBZ C 0 1 N N N N N N -54.176 83.812 18.435 7.046 -1.798 -1.597 C11 OYW 11
OYW C12 CCA C 0 1 Y N N N N N -54.199 83.231 17.173 6.106 -2.966 -1.443 C12 OYW 12
OYW C13 CCB C 0 1 Y N N N N N -53.030 82.355 15.257 3.915 -3.907 -1.658 C13 OYW 13
OYW C14 CCC C 0 1 Y N N N N N -53.007 82.935 16.521 4.777 -2.836 -1.800 C14 OYW 14
OYW C15 CCD C 0 1 Y N N N N N -54.247 82.071 14.648 4.383 -5.109 -1.159 C15 OYW 15
OYW C16 CCE C 0 1 Y N N N N N -55.414 82.946 16.564 6.575 -4.169 -0.949 C16 OYW 16
OYW C17 CCF C 0 1 Y N N N N N -55.436 82.367 15.302 5.714 -5.241 -0.807 C17 OYW 17
OYW N1 NBA N 1 1 Y N N N N N -54.223 85.293 18.300 7.046 -1.005 -0.366 N1 OYW 18
OYW N2 NBC N 0 1 N N N N N N -55.551 88.454 18.300 8.146 -0.269 2.853 N2 OYW 19
OYW N3 NBD N 0 1 N N N N N N -57.631 89.382 18.689 9.656 -1.155 4.369 N3 OYW 20
OYW N4 NBF N 0 1 N N N N N N -57.337 87.091 18.843 9.363 -2.180 2.266 N4 OYW 21
OYW N5 NBJ N 0 1 Y N N N N N -53.469 87.271 17.924 6.570 0.541 1.098 N5 OYW 22
OYW O1 "O5'" O 0 1 N N N N N N -46.874 86.222 15.940 -3.586 1.015 -3.580 O1 OYW 23
OYW O2 OAU O 0 1 N N N N N N -45.460 88.138 16.806 -1.824 -0.772 -3.308 O2 OYW 24
OYW O3 OAV O 0 1 N N N N N N -44.392 85.984 16.418 -3.692 -0.403 -1.495 O3 OYW 25
OYW O4 OAX O 0 1 N N N N N N -46.105 86.285 18.373 -1.810 1.402 -1.829 O4 OYW 26
OYW O5 OAY O 0 1 N N N N N N -51.318 87.876 17.182 4.715 2.049 1.034 O5 OYW 27
OYW O6 OBB O 0 1 N N N N N N -57.001 84.771 18.991 9.055 -3.120 0.260 O6 OYW 28
OYW O7 OBL O 0 1 N N N N N N -51.851 90.560 18.448 7.815 3.087 2.522 O7 OYW 29
OYW O8 OBN O 0 1 N N N N N N -50.365 89.167 20.359 5.799 4.684 2.913 O8 OYW 30
OYW O9 OBR O 0 1 N N N N N N -49.720 86.056 18.721 2.464 3.521 -0.070 O9 OYW 31
OYW O10 OBS O 0 1 N N N N N N -48.635 84.595 16.926 2.153 3.839 -2.554 O10 OYW 32
OYW O11 OBT O 0 1 N N N N N N -49.962 83.619 18.728 1.039 5.512 -1.028 O11 OYW 33
OYW O12 OBV O 0 1 N N N N N N -47.706 84.515 19.383 0.154 3.045 -1.233 O12 OYW 34
OYW O13 OBW O 0 1 N N N N N N -45.308 84.471 20.012 -1.982 3.945 -2.473 O13 OYW 35
OYW O14 OBY O 0 1 N N N N N N -45.863 83.810 17.713 -0.345 2.406 -3.623 O14 OYW 36
OYW P1 PAW P 0 1 N N N N N N -45.633 86.670 16.856 -2.746 0.326 -2.575 P1 OYW 37
OYW P2 PBU P 0 1 N N N N N N -48.966 84.664 18.371 1.467 3.976 -1.250 P2 OYW 38
OYW P3 PBX P 0 1 N N N N N N -46.175 84.732 18.840 -0.982 2.693 -2.318 P3 OYW 39
OYW CL1 CL1 CL 0 0 N N N N N N -54.287 81.352 13.082 3.300 -6.455 -0.979 CL1 OYW 40
OYW H1 H1 H 0 1 N N N N N N -52.150 85.580 17.807 5.611 0.472 -0.851 H1 OYW 41
OYW H2 H2 H 0 1 N N N N N N -53.021 89.043 16.846 5.772 1.548 2.772 H2 OYW 42
OYW H3 H3 H 0 1 N N N N N N -53.108 89.261 19.582 7.293 2.961 0.510 H3 OYW 43
OYW H4 H4 H 0 1 N N N N N N -51.414 87.455 19.708 5.991 4.887 0.854 H4 OYW 44
OYW H5 H5 H 0 1 N N N N N N -49.869 89.286 17.753 3.794 3.510 2.194 H5 OYW 45
OYW H6 H6 H 0 1 N N N N N N -48.586 87.151 17.373 3.673 5.159 0.285 H6 OYW 46
OYW H7 H7 H 0 1 N N N N N N -48.488 87.684 19.085 4.364 3.911 -0.780 H7 OYW 47
OYW H8 H8 H 0 1 N N N N N N -55.047 83.469 19.013 8.053 -2.165 -1.793 H8 OYW 48
OYW H9 H9 H 0 1 N N N N N N -53.252 83.520 18.956 6.718 -1.175 -2.430 H9 OYW 49
OYW H10 H10 H 0 1 N N N N N N -52.104 82.126 14.750 2.877 -3.805 -1.937 H10 OYW 50
OYW H11 H11 H 0 1 N N N N N N -52.063 83.156 16.996 4.412 -1.897 -2.190 H11 OYW 51
OYW H12 H12 H 0 1 N N N N N N -56.340 83.174 17.071 7.615 -4.271 -0.674 H12 OYW 52
OYW H13 H13 H 0 1 N N N N N N -56.381 82.146 14.828 6.080 -6.179 -0.418 H13 OYW 53
OYW H14 H14 H 0 1 N N N N N N -57.256 90.293 18.515 10.315 -1.828 4.598 H14 OYW 54
OYW H15 H15 H 0 1 N N N N N N -58.598 89.275 18.922 9.434 -0.456 5.004 H15 OYW 55
OYW H17 H17 H 0 1 N N N N N N -46.122 88.516 16.239 -1.246 -1.263 -2.708 H17 OYW 56
OYW H19 H19 H 0 1 N N N N N N -51.663 91.092 19.212 8.391 3.859 2.432 H19 OYW 57
OYW H20 H20 H 0 1 N N N N N N -50.892 89.229 21.147 6.644 5.079 3.165 H20 OYW 58
OYW H21 H21 H 0 1 N N N N N N -50.186 83.116 17.954 0.584 5.677 -0.191 H21 OYW 59
OYW H22 H22 H 0 1 N N N N N N -44.714 83.757 19.814 -2.435 4.190 -1.655 H22 OYW 60
OYW O15 O1 O 0 1 N N N N N N ? ? ? -6.153 -0.762 0.012 O15 OYW 61
OYW C18 C2 C 0 1 N N N N N N ? ? ? -7.339 -1.340 0.597 C18 OYW 62
OYW C19 C3 C 0 1 N N N N N N ? ? ? -7.786 -2.388 -0.454 C19 OYW 63
OYW C20 C4 C 0 1 N N N N N N ? ? ? -6.431 -2.937 -0.962 C20 OYW 64
OYW C21 C5 C 0 1 N N N N N N ? ? ? -5.416 -1.837 -0.594 C21 OYW 65
OYW C22 C6 C 0 1 N N N N N N ? ? ? -4.710 -1.338 -1.857 C22 OYW 66
OYW O16 O2 O 0 1 N N N N N N ? ? ? -6.105 -4.160 -0.297 O16 OYW 67
OYW O17 O3 O 0 1 N N N N N N ? ? ? -8.559 -3.424 0.156 O17 OYW 68
OYW H23 H23 H 0 1 N N N N N N ? ? ? -7.102 -1.824 1.545 H23 OYW 69
OYW H24 H24 H 0 1 N N N N N N ? ? ? -8.342 -1.915 -1.263 H24 OYW 70
OYW H25 H25 H 0 1 N N N N N N ? ? ? -6.459 -3.085 -2.041 H25 OYW 71
OYW H26 H26 H 0 1 N N N N N N ? ? ? -4.684 -2.229 0.112 H26 OYW 72
OYW H27 H27 H 0 1 N N N N N N ? ? ? -5.435 -0.851 -2.509 H27 OYW 73
OYW H28 H28 H 0 1 N N N N N N ? ? ? -4.260 -2.182 -2.379 H28 OYW 74
OYW H29 H29 H 0 1 N N N N N N ? ? ? -6.744 -4.871 -0.447 H29 OYW 75
OYW H30 H30 H 0 1 N N N N N N ? ? ? -8.862 -4.104 -0.461 H30 OYW 76
OYW N6 N1 N 0 1 Y N N N N N ? ? ? -8.374 -0.320 0.781 N6 OYW 77
OYW N7 N2 N 0 1 Y N N N N N ? ? ? -9.519 1.517 0.513 N7 OYW 78
OYW C23 C1 C 0 1 Y N N N N N ? ? ? -10.133 0.815 1.497 C23 OYW 79
OYW C24 C7 C 0 1 Y N N N N N ? ? ? -9.405 -0.366 1.680 C24 OYW 80
OYW C25 C9 C 0 1 Y N N N N N ? ? ? -8.483 0.853 0.092 C25 OYW 81
OYW N8 N3 N 0 1 N N N N N N ? ? ? -11.612 0.099 3.212 N8 OYW 82
OYW C26 C10 C 0 1 N N N N N N ? ? ? -11.274 1.039 2.301 C26 OYW 83
OYW C27 C8 C 0 1 N N N N N N ? ? ? -10.858 -1.029 3.349 C27 OYW 84
OYW N9 N4 N 0 1 N N N N N N ? ? ? -9.797 -1.250 2.605 N9 OYW 85
OYW N10 N5 N 0 1 N N N N N N ? ? ? -11.225 -1.966 4.282 N10 OYW 86
OYW H18 H18 H 0 1 N N N N N N ? ? ? -7.810 1.180 -0.687 H18 OYW 87
OYW H31 H31 H 0 1 N N N N N N ? ? ? -12.391 0.230 3.775 H31 OYW 88
OYW H34 H34 H 0 1 N N N N N N ? ? ? -12.010 -1.821 4.833 H34 OYW 89
OYW H35 H35 H 0 1 N N N N N N ? ? ? -10.698 -2.773 4.391 H35 OYW 90
OYW H16 H16 H 0 1 N N N N N N -58.302 86.974 19.077 10.025 -2.845 2.512 H16 OYW 91
OYW O18 O18 O 0 1 N N N N N N ? ? ? -11.938 2.054 2.177 O18 OYW 92
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OYW CL1 C15 SING N N 1
OYW C15 C13 DOUB Y N 2
OYW C15 C17 SING Y N 3
OYW C13 C14 SING Y N 4
OYW C17 C16 DOUB Y N 5
OYW O1 P1 DOUB N N 6
OYW O3 P1 SING N N 7
OYW C14 C12 DOUB Y N 8
OYW C16 C12 SING Y N 9
OYW O2 P1 SING N N 10
OYW P1 O4 SING N N 11
OYW O10 P2 DOUB N N 12
OYW C12 C11 SING N N 13
OYW O5 C6 SING N N 14
OYW O5 C9 SING N N 15
OYW C6 N5 SING N N 16
OYW C6 C7 SING N N 17
OYW O14 P3 DOUB N N 18
OYW N5 C1 SING Y N 19
OYW N5 C5 SING Y N 20
OYW C1 N1 DOUB Y N 21
OYW C9 C10 SING N N 22
OYW C9 C8 SING N N 23
OYW C5 N2 SING N N 24
OYW C5 C4 DOUB Y N 25
OYW N1 C11 SING N N 26
OYW N1 C4 SING Y N 27
OYW N2 C2 DOUB N N 28
OYW C10 O9 SING N N 29
OYW P2 O9 SING N N 30
OYW P2 O11 SING N N 31
OYW P2 O12 SING N N 32
OYW O4 P3 SING N N 33
OYW O7 C7 SING N N 34
OYW C4 C3 SING N N 35
OYW C2 N3 SING N N 36
OYW C2 N4 SING N N 37
OYW C3 N4 SING N N 38
OYW C3 O6 DOUB N N 39
OYW P3 O12 SING N N 40
OYW P3 O13 SING N N 41
OYW C7 C8 SING N N 42
OYW C8 O8 SING N N 43
OYW C1 H1 SING N N 44
OYW C6 H2 SING N N 45
OYW C7 H3 SING N N 46
OYW C8 H4 SING N N 47
OYW C9 H5 SING N N 48
OYW C10 H6 SING N N 49
OYW C10 H7 SING N N 50
OYW C11 H8 SING N N 51
OYW C11 H9 SING N N 52
OYW C13 H10 SING N N 53
OYW C14 H11 SING N N 54
OYW C16 H12 SING N N 55
OYW C17 H13 SING N N 56
OYW N3 H14 SING N N 57
OYW N3 H15 SING N N 58
OYW O2 H17 SING N N 59
OYW O7 H19 SING N N 60
OYW O8 H20 SING N N 61
OYW O11 H21 SING N N 62
OYW O13 H22 SING N N 63
OYW O15 C18 SING N N 64
OYW C18 C19 SING N N 65
OYW C19 C20 SING N N 66
OYW C20 C21 SING N N 67
OYW C21 O15 SING N N 68
OYW C22 O3 SING N N 69
OYW O16 C20 SING N N 70
OYW O17 C19 SING N N 71
OYW C21 C22 SING N N 72
OYW C18 H23 SING N N 73
OYW C19 H24 SING N N 74
OYW C20 H25 SING N N 75
OYW C21 H26 SING N N 76
OYW C22 H27 SING N N 77
OYW C22 H28 SING N N 78
OYW O16 H29 SING N N 79
OYW O17 H30 SING N N 80
OYW N6 C18 SING N N 81
OYW N7 C23 SING Y N 82
OYW C23 C24 DOUB Y N 83
OYW C24 N6 SING Y N 84
OYW N6 C25 SING Y N 85
OYW C25 N7 DOUB Y N 86
OYW N8 C26 SING N N 87
OYW C27 N9 DOUB N N 88
OYW N9 C24 SING N N 89
OYW C23 C26 SING N N 90
OYW N8 C27 SING N N 91
OYW N10 C27 SING N N 92
OYW C25 H18 SING N N 93
OYW N8 H31 SING N N 94
OYW N10 H34 SING N N 95
OYW N10 H35 SING N N 96
OYW N4 H16 SING N N 97
OYW C26 O18 DOUB N N 98
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OYW InChI InChI 1.03 InChI=1S/C27H32ClN10O18P3/c28-11-3-1-10(2-4-11)5-36-9-38(21-15(36)23(44)35-27(30)33-21)25-19(42)17(40)13(54-25)7-52-58(47,48)56-59(49,50)55-57(45,46)51-6-12-16(39)18(41)24(53-12)37-8-31-14-20(37)32-26(29)34-22(14)43/h1-4,8-9,12-13,16-19,24-25,39-42H,5-7H2,(H8-,29,30,32,33,34,35,43,44,45,46,47,48,49,50)/p+1/t12?,13-,16?,17-,18?,19-,24?,25-/m1/s1
OYW InChIKey InChI 1.03 YLIRYFJCSIVXAE-AGNUKMHHSA-O
OYW SMILES_CANONICAL CACTVS 3.385 NC1=Nc2n(cnc2C(=O)N1)C3OC(CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5c[n+](Cc6ccc(Cl)cc6)c7C(=O)NC(=Nc57)N)C(O)C3O
OYW SMILES CACTVS 3.385 NC1=Nc2n(cnc2C(=O)N1)C3OC(CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5c[n+](Cc6ccc(Cl)cc6)c7C(=O)NC(=Nc57)N)C(O)C3O
OYW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ccc1C[n+]2cn(c3c2C(=O)NC(=N3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6N=C(NC7=O)N)O)O)O)O)Cl
OYW SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ccc1C[n+]2cn(c3c2C(=O)NC(=N3)N)C4C(C(C(O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6N=C(NC7=O)N)O)O)O)O)Cl
#
_pdbx_chem_comp_identifier.comp_id OYW
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(4-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OYW 'Create component' 2020-04-08 PDBE
OYW 'Other modification' 2020-06-02 PDBE
OYW 'Initial release' 2020-06-10 RCSB
OYW 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id OYW
_pdbx_chem_comp_synonyms.name
"[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(4-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id OYW
_pdbe_chem_comp_synonyms.name
'[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(4-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OYW C1 C -0.231 -10.104 1
OYW C2 C 4.569 -8.825 2
OYW C3 C 3.521 -11.204 3
OYW C4 C 2.146 -10.599 4
OYW C5 C 1.986 -9.108 5
OYW C6 C -0.102 -7.432 6
OYW C7 C -1.569 -7.131 7
OYW C8 C -1.732 -5.637 8
OYW C9 C -0.365 -5.025 9
OYW C10 C -0.042 -3.459 10
OYW C11 C 0.475 -12.684 11
OYW C12 C -0.948 -13.153 12
OYW C13 C -3.495 -12.623 13
OYW C14 C -2.069 -12.157 14
OYW C15 C -3.797 -14.092 15
OYW C16 C -1.257 -14.621 16
OYW C17 C -2.680 -15.095 17
OYW N1 N 0.781 -11.217 18
OYW N2 N 3.194 -8.223 19
OYW N3 N 5.778 -7.939 20
OYW N4 N 4.729 -10.316 21
OYW N5 N 0.516 -8.805 22
OYW O1 O 2.115 4.651 23
OYW O2 O -0.882 4.514 24
OYW O3 O 0.690 6.174 25
OYW O4 O 0.835 2.968 26
OYW O5 O 0.646 -6.132 27
OYW O6 O 3.682 -12.694 28
OYW O7 O -2.679 -8.138 29
OYW O8 O -3.034 -4.893 30
OYW O9 O -1.217 -2.473 31
OYW O10 O 0.355 -0.813 32
OYW O11 O -2.642 -0.949 33
OYW O12 O -1.361 0.734 34
OYW O13 O -1.341 2.895 35
OYW O14 O 0.814 0.807 36
OYW P1 P 0.633 4.576 37
OYW P2 P -1.160 -0.875 38
OYW P3 P -0.263 1.851 39
OYW CL1 Cl -5.222 -14.562 40
OYW O15 O -1.173 9.834 41
OYW C18 C -0.425 11.134 42
OYW C19 C 1.042 10.833 43
OYW C20 C 1.205 9.338 44
OYW C21 C -0.162 8.726 45
OYW C22 C -0.485 7.160 46
OYW O16 O 2.507 8.594 47
OYW O17 O 2.152 11.840 48
OYW N6 N -1.044 12.503 49
OYW N7 N -2.676 14.302 50
OYW C23 C -1.307 14.915 51
OYW C24 C -0.297 13.808 52
OYW C25 C -2.510 12.811 53
OYW N8 N 0.617 16.661 54
OYW C26 C -0.849 16.346 55
OYW C27 C 1.627 15.553 56
OYW N9 N 1.165 14.124 57
OYW N10 N 3.092 15.870 58
OYW O18 O -1.857 17.455 59
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OYW CL1 C15 SINGLE NONE 1
OYW C15 C13 DOUBLE NONE 2
OYW C15 C17 SINGLE NONE 3
OYW C13 C14 SINGLE NONE 4
OYW C17 C16 DOUBLE NONE 5
OYW O1 P1 DOUBLE NONE 6
OYW O3 P1 SINGLE NONE 7
OYW C14 C12 DOUBLE NONE 8
OYW C16 C12 SINGLE NONE 9
OYW P1 O2 SINGLE BEGINDASH 10
OYW P1 O4 SINGLE NONE 11
OYW O10 P2 DOUBLE NONE 12
OYW C12 C11 SINGLE NONE 13
OYW O5 C6 SINGLE NONE 14
OYW O5 C9 SINGLE NONE 15
OYW C6 N5 SINGLE BEGINWEDGE 16
OYW C6 C7 SINGLE NONE 17
OYW O14 P3 DOUBLE NONE 18
OYW N5 C1 SINGLE NONE 19
OYW N5 C5 SINGLE NONE 20
OYW C1 N1 DOUBLE NONE 21
OYW C9 C10 SINGLE BEGINWEDGE 22
OYW C9 C8 SINGLE NONE 23
OYW C5 N2 SINGLE NONE 24
OYW C5 C4 DOUBLE NONE 25
OYW N1 C11 SINGLE NONE 26
OYW N1 C4 SINGLE NONE 27
OYW N2 C2 DOUBLE NONE 28
OYW C10 O9 SINGLE NONE 29
OYW P2 O9 SINGLE NONE 30
OYW P2 O11 SINGLE BEGINWEDGE 31
OYW P2 O12 SINGLE NONE 32
OYW O4 P3 SINGLE NONE 33
OYW C7 O7 SINGLE BEGINDASH 34
OYW C4 C3 SINGLE NONE 35
OYW C2 N3 SINGLE NONE 36
OYW C2 N4 SINGLE NONE 37
OYW C3 N4 SINGLE NONE 38
OYW C3 O6 DOUBLE NONE 39
OYW P3 O12 SINGLE NONE 40
OYW P3 O13 SINGLE BEGINWEDGE 41
OYW C7 C8 SINGLE NONE 42
OYW C8 O8 SINGLE BEGINDASH 43
OYW O15 C18 SINGLE NONE 44
OYW C18 C19 SINGLE NONE 45
OYW C19 C20 SINGLE NONE 46
OYW C20 C21 SINGLE NONE 47
OYW C21 O15 SINGLE NONE 48
OYW C22 O3 SINGLE NONE 49
OYW C20 O16 SINGLE BEGINDASH 50
OYW C19 O17 SINGLE BEGINDASH 51
OYW C21 C22 SINGLE BEGINWEDGE 52
OYW C18 N6 SINGLE BEGINWEDGE 53
OYW N7 C23 SINGLE NONE 54
OYW C23 C24 DOUBLE NONE 55
OYW C24 N6 SINGLE NONE 56
OYW N6 C25 SINGLE NONE 57
OYW C25 N7 DOUBLE NONE 58
OYW N8 C26 SINGLE NONE 59
OYW C27 N9 DOUBLE NONE 60
OYW N9 C24 SINGLE NONE 61
OYW C23 C26 SINGLE NONE 62
OYW N8 C27 SINGLE NONE 63
OYW N10 C27 SINGLE NONE 64
OYW C26 O18 DOUBLE NONE 65
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OYW MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)O[PH](=O)OC[C@@H]2CC[C@H](n3c[n+](Cc4ccccc4)c4c(=O)[nH]cnc43)O2)O1' InChI=1S/C27H31N8O11P3/c36-26-22-24(28-13-30-26)34(15-32-22)20-8-6-18(43-20)11-41-47(38)45-49(40)46-48(39)42-12-19-7-9-21(44-19)35-16-33(10-17-4-2-1-3-5-17)23-25(35)29-14-31-27(23)37/h1-5,13-16,18-21,47-49H,6-12H2,(H-,28,29,30,31,36,37)/p+1/t18-,19-,20+,21+/m0/s1 XJXMVQAYSHNOAN-UWHLTILDSA-O
OYW imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
OYW phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
OYW phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
OYW purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
OYW pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
OYW ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OYW C1 S1 1
OYW C2 S1 1
OYW C3 S1 1
OYW C4 S1 1
OYW C5 S1 1
OYW C6 S1 1
OYW C7 S1 1
OYW C8 S1 1
OYW C9 S1 1
OYW C10 S1 1
OYW C11 S1 1
OYW C12 S1 1
OYW C13 S1 1
OYW C14 S1 1
OYW C15 S1 1
OYW C16 S1 1
OYW C17 S1 1
OYW N1 S1 1
OYW N2 S1 1
OYW N4 S1 1
OYW N5 S1 1
OYW O1 S1 1
OYW O3 S1 1
OYW O4 S1 1
OYW O5 S1 1
OYW O6 S1 1
OYW O9 S1 1
OYW O10 S1 1
OYW O12 S1 1
OYW O14 S1 1
OYW P1 S1 1
OYW P2 S1 1
OYW P3 S1 1
OYW O15 S1 1
OYW C18 S1 1
OYW C19 S1 1
OYW C20 S1 1
OYW C21 S1 1
OYW C22 S1 1
OYW N6 S1 1
OYW N7 S1 1
OYW C23 S1 1
OYW C24 S1 1
OYW C25 S1 1
OYW N8 S1 1
OYW C26 S1 1
OYW C27 S1 1
OYW N9 S1 1
OYW O18 S1 1
OYW C4 F1 1
OYW C5 F1 1
OYW N5 F1 1
OYW C1 F1 1
OYW N1 F1 1
OYW H11 F1 2
OYW H12 F1 2
OYW H9 F1 2
OYW H13 F1 2
OYW H10 F1 2
OYW C12 F2 1
OYW C14 F2 1
OYW C13 F2 1
OYW C15 F2 1
OYW C17 F2 1
OYW C16 F2 1
OYW O2 F3 1
OYW P1 F3 1
OYW O1 F3 1
OYW O3 F3 1
OYW O4 F3 1
OYW O4 F3 2
OYW P3 F3 2
OYW O14 F3 2
OYW O12 F3 2
OYW O13 F3 2
OYW O9 F3 3
OYW P2 F3 3
OYW O10 F3 3
OYW O11 F3 3
OYW O12 F3 3
OYW N1 F4 1
OYW C1 F4 1
OYW N5 F4 1
OYW C5 F4 1
OYW C4 F4 1
OYW C3 F4 1
OYW N4 F4 1
OYW C2 F4 1
OYW N2 F4 1
OYW H10 F4 2
OYW H13 F4 2
OYW H9 F4 2
OYW H12 F4 2
OYW H11 F4 2
OYW H15 F4 2
OYW H14 F4 2
OYW H17 F4 2
OYW H19 F4 2
OYW C4 F5 1
OYW C5 F5 1
OYW N2 F5 1
OYW C2 F5 1
OYW N4 F5 1
OYW C3 F5 1
OYW H11 F5 2
OYW H12 F5 2
OYW H19 F5 2
OYW H17 F5 2
OYW H14 F5 2
OYW H15 F5 2
OYW C7 F6 1
OYW C8 F6 1
OYW C9 F6 1
OYW O5 F6 1
OYW C6 F6 1
OYW C10 F6 1
OYW O9 F6 1
OYW O8 F6 1
OYW O7 F6 1
OYW H3 F6 2
OYW H4 F6 2
OYW H5 F6 2
OYW H1 F6 2
OYW H2 F6 2
OYW H6 F6 2
OYW O3 F6 2
OYW H7 F6 2
OYW H8 F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id OYW
_pdbe_chem_comp_rdkit_properties.exactmw 913.087
_pdbe_chem_comp_rdkit_properties.amw 913.988
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 28
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 13
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 11
_pdbe_chem_comp_rdkit_properties.NumHBA 25
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 59
_pdbe_chem_comp_rdkit_properties.NumAtoms 92
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 32
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.407
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 11
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 378.793
_pdbe_chem_comp_rdkit_properties.tpsa 418.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.256
_pdbe_chem_comp_rdkit_properties.CrippenMR 187.363
_pdbe_chem_comp_rdkit_properties.chi0v 30.479
_pdbe_chem_comp_rdkit_properties.chi1v 19.035
_pdbe_chem_comp_rdkit_properties.chi2v 10.507
_pdbe_chem_comp_rdkit_properties.chi3v 10.507
_pdbe_chem_comp_rdkit_properties.chi4v 7.397
_pdbe_chem_comp_rdkit_properties.chi0n 60.040
_pdbe_chem_comp_rdkit_properties.chi1n 29.816
_pdbe_chem_comp_rdkit_properties.chi2n 6.488
_pdbe_chem_comp_rdkit_properties.chi3n 6.488
_pdbe_chem_comp_rdkit_properties.chi4n 4.299
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.020
_pdbe_chem_comp_rdkit_properties.kappa1 18.138
_pdbe_chem_comp_rdkit_properties.kappa2 16.110
_pdbe_chem_comp_rdkit_properties.kappa3 9.046
_pdbe_chem_comp_rdkit_properties.Phi 4.953
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OYW C1 -6.172 1.380 0.564 ETKDGv3 1
OYW C2 -5.807 -3.105 -0.138 ETKDGv3 2
OYW C3 -7.129 -1.934 1.616 ETKDGv3 3
OYW C4 -6.576 -0.691 1.078 ETKDGv3 4
OYW C5 -5.744 -0.733 0.066 ETKDGv3 5
OYW C6 -4.935 0.997 -1.664 ETKDGv3 6
OYW C7 -4.167 2.315 -1.600 ETKDGv3 7
OYW C8 -3.081 2.127 -2.633 ETKDGv3 8
OYW C9 -2.901 0.607 -2.653 ETKDGv3 9
OYW C10 -1.758 0.144 -1.739 ETKDGv3 10
OYW C11 -7.849 1.179 2.354 ETKDGv3 11
OYW C12 -9.228 1.136 1.748 ETKDGv3 12
OYW C13 -10.887 1.861 0.098 ETKDGv3 13
OYW C14 -9.538 1.917 0.697 ETKDGv3 14
OYW C15 -11.813 1.036 0.602 ETKDGv3 15
OYW C16 -10.263 0.232 2.310 ETKDGv3 16
OYW C17 -11.485 0.184 1.764 ETKDGv3 17
OYW N1 -6.856 0.666 1.409 ETKDGv3 18
OYW N2 -5.350 -1.958 -0.569 ETKDGv3 19
OYW N3 -5.401 -4.313 -0.780 ETKDGv3 20
OYW N4 -6.720 -3.154 0.981 ETKDGv3 21
OYW N5 -5.380 0.585 -0.332 ETKDGv3 22
OYW O1 3.287 -0.590 3.764 ETKDGv3 23
OYW O2 3.783 -2.820 2.524 ETKDGv3 24
OYW O3 4.650 -0.381 1.526 ETKDGv3 25
OYW O4 1.912 -0.975 1.573 ETKDGv3 26
OYW O5 -4.102 0.002 -2.226 ETKDGv3 27
OYW O6 -7.917 -1.947 2.598 ETKDGv3 28
OYW O7 -5.004 3.404 -1.897 ETKDGv3 29
OYW O8 -3.466 2.611 -3.900 ETKDGv3 30
OYW O9 -0.531 0.619 -2.242 ETKDGv3 31
OYW O10 0.514 0.959 0.142 ETKDGv3 32
OYW O11 2.190 0.605 -1.839 ETKDGv3 33
OYW O12 0.636 -1.491 -0.852 ETKDGv3 34
OYW O13 1.819 -3.538 0.542 ETKDGv3 35
OYW O14 3.249 -1.688 -0.618 ETKDGv3 36
OYW P1 3.401 -1.176 2.374 ETKDGv3 37
OYW P2 0.703 0.187 -1.146 ETKDGv3 38
OYW P3 1.957 -1.900 0.142 ETKDGv3 39
OYW CL1 -13.415 0.964 -0.107 ETKDGv3 40
OYW H1 -6.245 2.459 0.502 ETKDGv3 41
OYW H2 -5.827 1.107 -2.320 ETKDGv3 42
OYW H3 -3.702 2.443 -0.593 ETKDGv3 43
OYW H4 -2.156 2.660 -2.322 ETKDGv3 44
OYW H5 -2.677 0.263 -3.687 ETKDGv3 45
OYW H6 -1.761 -0.969 -1.726 ETKDGv3 46
OYW H7 -1.951 0.521 -0.708 ETKDGv3 47
OYW H8 -7.602 2.226 2.635 ETKDGv3 48
OYW H9 -7.811 0.582 3.290 ETKDGv3 49
OYW H10 -11.119 2.491 -0.752 ETKDGv3 50
OYW H11 -8.806 2.594 0.275 ETKDGv3 51
OYW H12 -10.039 -0.388 3.168 ETKDGv3 52
OYW H13 -12.236 -0.477 2.179 ETKDGv3 53
OYW H14 -4.742 -4.288 -1.590 ETKDGv3 54
OYW H15 -5.759 -5.235 -0.447 ETKDGv3 55
OYW H17 4.463 -2.990 1.825 ETKDGv3 56
OYW H19 -4.485 4.222 -1.681 ETKDGv3 57
OYW H20 -4.281 2.121 -4.187 ETKDGv3 58
OYW H21 2.156 1.590 -1.937 ETKDGv3 59
OYW H22 1.789 -4.010 -0.328 ETKDGv3 60
OYW O15 6.616 1.629 1.399 ETKDGv3 61
OYW C18 7.613 1.083 0.563 ETKDGv3 62
OYW C19 6.942 0.393 -0.616 ETKDGv3 63
OYW C20 5.658 1.176 -0.766 ETKDGv3 64
OYW C21 5.420 1.727 0.649 ETKDGv3 65
OYW C22 4.301 0.977 1.382 ETKDGv3 66
OYW O16 5.778 2.219 -1.707 ETKDGv3 67
OYW O17 7.748 0.456 -1.764 ETKDGv3 68
OYW H23 8.254 1.918 0.201 ETKDGv3 69
OYW H24 6.709 -0.668 -0.360 ETKDGv3 70
OYW H25 4.841 0.502 -1.101 ETKDGv3 71
OYW H26 5.125 2.798 0.594 ETKDGv3 72
OYW H27 4.166 1.457 2.378 ETKDGv3 73
OYW H28 3.360 1.087 0.797 ETKDGv3 74
OYW H29 6.504 2.827 -1.407 ETKDGv3 75
OYW H30 7.324 -0.138 -2.437 ETKDGv3 76
OYW N6 8.440 0.145 1.319 ETKDGv3 77
OYW N7 8.813 -1.849 2.390 ETKDGv3 78
OYW C23 9.899 -1.525 1.530 ETKDGv3 79
OYW C24 9.680 -0.398 0.906 ETKDGv3 80
OYW C25 7.980 -0.861 2.235 ETKDGv3 81
OYW N8 11.918 -1.830 0.148 ETKDGv3 82
OYW C26 11.055 -2.339 1.177 ETKDGv3 83
OYW C27 11.592 -0.578 -0.500 ETKDGv3 84
OYW N9 10.528 0.094 -0.142 ETKDGv3 85
OYW N10 12.428 -0.075 -1.540 ETKDGv3 86
OYW H18 7.024 -0.820 2.739 ETKDGv3 87
OYW H31 12.766 -2.369 -0.139 ETKDGv3 88
OYW H34 12.199 0.826 -2.017 ETKDGv3 89
OYW H35 13.279 -0.603 -1.837 ETKDGv3 90
OYW H16 -7.083 -4.071 1.327 ETKDGv3 91
OYW O18 11.287 -3.441 1.739 ETKDGv3 92
#