Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OTG    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O sing 1.43 N N
2 C1 C2 C C sing 1.53 N N
3 C1 O5 C O sing 1.43 N N
4 C1 H1 C H sing 1.09 N N
5 O1 HO1 O H sing 0.97 N N
6 C2 N2 C N sing 1.46 N N
7 C2 C3 C C sing 1.53 N N
8 C2 H2 C H sing 1.09 N N
9 N2 C8' N C sing 1.35 N N
10 N2 HN21 N H sing 0.97 N N
11 C3 O3 C O sing 1.43 N N
12 C3 C4 C C sing 1.53 N N
13 C3 H3 C H sing 1.09 N N
14 O3 HO3 O H sing 0.97 N N
15 C4 O4 C O sing 1.43 N N
16 C4 C5 C C sing 1.53 N N
17 C4 H4 C H sing 1.09 N N
18 O4 HO4 O H sing 0.97 N N
19 C5 O5 C O sing 1.43 N N
20 C5 C6 C C sing 1.53 N N
21 C5 H5 C H sing 1.09 N N
22 C6 O6 C O sing 1.43 N N
23 C6 H61 C H sing 1.09 N N
24 C6 H62 C H sing 1.09 N N
25 O6 HO6 O H sing 0.97 N N
26 C1' C2' C C doub 1.4 N Y
27 C1' C6' C C sing 1.38 N Y
28 C1' C7' C C sing 1.51 N N
29 C2' C3' C C sing 1.4 N Y
30 C2' C8' C C sing 1.48 N N
31 C3' C4' C C doub 1.38 N Y
32 C3' H3' C H sing 1.08 N N
33 C4' C5' C C sing 1.38 N Y
34 C4' H4' C H sing 1.08 N N
35 C5' C6' C C doub 1.38 N Y
36 C5' H5' C H sing 1.08 N N
37 C6' H6' C H sing 1.08 N N
38 C7' H7'1 C H sing 1.09 N N
39 C7' H7'2 C H sing 1.09 N N
40 C7' H7'3 C H sing 1.09 N N
41 C8' O8' C O doub 1.22 N N