Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : OTG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.046 -0.47 -1.337
2 O1 O O1 N N Y 0 0.608 -1.828 -1.417
3 C2 C C2 R N N 0 -0.06 0.386 -0.719
4 N2 N N2 N N N 0 -0.35 -0.09 0.635
5 C3 C C3 R N N 0 -1.321 0.275 -1.583
6 O3 O O3 N N N 0 -2.317 1.184 -1.108
7 C4 C C4 S N N 0 -0.956 0.623 -3.03
8 O4 O O4 N N N 0 -2.079 0.381 -3.88
9 C5 C C5 R N N 0 0.218 -0.251 -3.474
10 O5 O O5 N N N 0 1.351 0.005 -2.646
11 C6 C C6 N N N 0 0.568 0.068 -4.929
12 O6 O O6 N N N 0 1.661 -0.752 -5.347
13 C1' C C1' N Y N 0 0.625 0.55 4.156
14 C2' C C2' N Y N 0 0.023 -0.059 3.054
15 C3' C C3' N Y N 0 -0.846 -1.133 3.248
16 C4' C C4' N Y N 0 -1.115 -1.577 4.526
17 C5' C C5' N Y N 0 -0.519 -0.965 5.614
18 C6' C C6' N Y N 0 0.348 0.095 5.429
19 C7' C C7' N N N 0 1.572 1.706 3.956
20 C8' C C8' N N N 0 0.316 0.422 1.687
21 O8' O O8' N N N 0 1.159 1.28 1.513
22 H1 H H1 N N N 0 1.939 -0.413 -0.714
23 HO1 H HO1 N N Y 0 1.332 -2.332 -1.81
24 H2 H H2 N N N 0 0.262 1.426 -0.677
25 HN21 H HN2 N N N 0 -1.023 -0.775 0.774
26 H3 H H3 N N N 0 -1.705 -0.743 -1.537
27 HO3 H HO3 N N Y 0 -3.084 1.085 -1.688
28 H4 H H4 N N N 0 -0.672 1.673 -3.091
29 HO4 H HO4 N N Y 0 -1.803 0.608 -4.779
30 H5 H H5 N N N 0 -0.059 -1.301 -3.39
31 H61 H H61 N N N 0 -0.296 -0.128 -5.562
32 H62 H H62 N N N 0 0.849 1.118 -5.012
33 HO6 H HO6 N N Y 0 1.848 -0.519 -6.267
34 H3' H H3' N N N 0 -1.311 -1.612 2.399
35 H4' H H4' N N N 0 -1.792 -2.405 4.677
36 H5' H H5' N N N 0 -0.733 -1.317 6.613
37 H6' H H6' N N N 0 0.81 0.569 6.283
38 H7'1 H H7'1 N N N 0 2.567 1.325 3.729
39 H7'2 H H7'2 N N N 0 1.221 2.323 3.129
40 H7'3 H H7'3 N N N 0 1.61 2.305 4.866