Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : N6E    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C11 N3 C N sing 1.46 N N
2 N3 C2 N C sing 1.38 N N
3 C2 N1 C N doub 1.33 N Y
4 C2 C1 C C sing 1.41 N Y
5 N1 C3 N C sing 1.32 N Y
6 C1 N4 C N sing 1.35 N Y
7 C1 C4 C C doub 1.41 N Y
8 N4 C5 N C doub 1.3 N Y
9 C3 N2 C N doub 1.32 N Y
10 C4 N2 C N sing 1.33 N Y
11 C4 N5 C N sing 1.37 N Y
12 C5 N5 C N sing 1.36 N Y
13 C7 O1 C O sing 1.43 N N
14 C7 C8 C C sing 1.54 N N
15 C7 C6 C C sing 1.54 N N
16 N5 C6 N C sing 1.47 N N
17 O2 C8 O C sing 1.43 N N
18 C8 C9 C C sing 1.54 N N
19 C6 O3 C O sing 1.44 N N
20 C9 O3 C O sing 1.44 N N
21 C9 C10 C C sing 1.53 N N
22 C10 O4 C O sing 1.43 N N
23 O4 P1 O P sing 1.61 N N
24 O5 P1 O P doub 1.48 N N
25 O7 P1 O P sing 1.61 N N
26 O7 P2 O P sing 1.61 N N
27 P1 O6 P O sing 1.61 N N
28 O9 P2 O P doub 1.48 N N
29 P2 O10 P O sing 1.61 N N
30 P2 O8 P O sing 1.61 N N
31 O10 P3 O P sing 1.61 N N
32 O12 P3 O P doub 1.48 N N
33 P3 O13 P O sing 1.61 N N
34 P3 O11 P O sing 1.61 N N
35 C3 H1 C H sing 1.08 N N
36 C5 H2 C H sing 1.08 N N
37 C6 H3 C H sing 1.09 N N
38 C7 H4 C H sing 1.09 N N
39 C8 H5 C H sing 1.09 N N
40 C9 H6 C H sing 1.09 N N
41 C10 H7 C H sing 1.09 N N
42 C10 H8 C H sing 1.09 N N
43 C11 H9 C H sing 1.09 N N
44 C11 H10 C H sing 1.09 N N
45 C11 H11 C H sing 1.09 N N
46 N3 H12 N H sing 0.97 N N
47 O1 H13 O H sing 0.97 N N
48 O2 H14 O H sing 0.97 N N
49 O6 H15 O H sing 0.97 N N
50 O8 H16 O H sing 0.97 N N
51 O11 H17 O H sing 0.97 N N
52 O13 H18 O H sing 0.97 N N