Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : N6E

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C5 N Y N 0 5.662 -1.534 -0.454
2 C2 C C6 N Y N 0 6.854 -2.232 -0.195
3 C3 C C2 N Y N 0 7.072 -1.056 1.78
4 C4 C C4 N Y N 0 5.235 -0.578 0.484
5 C5 C C8 N Y N 0 3.814 -0.677 -1.199
6 C6 C C1* R N N 0 3.247 0.982 0.615
7 C7 C C2* R N N 0 3.728 2.386 0.187
8 C8 C C3* S N N 0 2.425 3.204 0.048
9 C9 C C4* R N N 0 1.31 2.197 0.408
10 C10 C C5* N N N 0 0.08 2.426 -0.473
11 C11 C CAA N N N 0 8.571 -3.898 -0.798
12 N1 N N1 N Y N 0 7.516 -1.96 0.924
13 N2 N N3 N Y N 0 5.966 -0.373 1.575
14 O1 O O2* N N N 0 4.571 2.954 1.192
15 N3 N N6 N N N 0 7.327 -3.18 -1.085
16 N4 N N7 N Y N 0 4.75 -1.544 -1.456
17 N5 N N9 N Y N 0 4.069 -0.055 -0.014
18 O2 O O3* N N N 0 2.422 4.302 0.963
19 O3 O O4* N N N 0 1.885 0.899 0.142
20 O4 O O5* N N N 0 -0.978 1.565 -0.047
21 O5 O OAU N N N 0 -2.261 1.29 -2.203
22 O6 O OAW N N N 0 -3.156 2.956 -0.531
23 O7 O OAX N N N 0 -3.317 0.367 -0.105
24 O8 O OAY N N N 0 -4.191 -1.595 -1.621
25 O9 O OBA N N N 0 -5.562 0.491 -1.251
26 O10 O OBB N N N 0 -5.344 -1.107 0.69
27 O11 O OBC N N N 0 -7.895 -0.582 1.05
28 O12 O OBE N N N 0 -7.14 -2.652 -0.181
29 O13 O OBF N N N 0 -6.776 -2.597 2.316
30 P1 P PAV N N N 0 -2.425 1.539 -0.753
31 P2 P PAZ N N N 0 -4.624 -0.441 -0.586
32 P3 P PBD N N N 0 -6.796 -1.754 0.944
33 H1 H H21 N N N 0 7.642 -0.865 2.677
34 H2 H H81 N N N 0 2.962 -0.479 -1.833
35 H3 H H1*1 N N N 0 3.278 0.884 1.7
36 H4 H H2*1 N N N 0 4.253 2.336 -0.766
37 H5 H H3*1 N N N 0 2.303 3.558 -0.975
38 H6 H H4*1 N N N 0 1.044 2.286 1.462
39 H7 H H5*2 N N N 0 -0.24 3.465 -0.388
40 H8 H H5*1 N N N 0 0.331 2.207 -1.511
41 H9 H HAA2 N N N 0 9.391 -3.184 -0.713
42 H10 H HAA1 N N N 0 8.467 -4.445 0.14
43 H14 H H3*2 N N N 0 3.14 4.935 0.82
44 H11 H HAA3 N N N 0 8.781 -4.599 -1.606
45 H12 H H61 N N N 0 6.834 -3.37 -1.898
46 H13 H H2*2 N N N 0 4.853 3.859 1.003
47 H15 H H1 N N N 0 -3.296 3.185 0.398
48 H16 H H2 N N N 0 -3.575 -2.243 -1.253
49 H17 H H3 N N N 0 -7.733 0.045 1.768
50 H18 H H4 N N N 0 -7.62 -3.016 2.533