Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MGO    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OAJ PBE O P sing 1.64 N N
2 PBE OAD P O sing 1.66 N N
3 PBE OAI P O doub 1.51 N N
4 PBE OAS P O sing 1.66 N N
5 OAS PBG O P sing 1.61 N N
6 PBG OAL P O sing 1.61 N N
7 PBG OAF P O doub 1.48 N N
8 PBG OAT P O sing 1.57 N N
9 OAT PBF O P sing 1.59 N N
10 PBF OAK P O sing 1.64 N N
11 PBF OAE P O doub 1.49 N N
12 PBF O5' P O sing 1.61 N N
13 O5' C5' O C sing 1.42 N N
14 C5' C4' C C sing 1.51 N N
15 C4' O4' C O sing 1.44 N N
16 C4' C3' C C sing 1.53 N N
17 O4' C1' O C sing 1.48 N N
18 C3' O3' C O sing 1.4 N N
19 C3' C2' C C sing 1.51 N N
20 C2' O2' C O sing 1.42 N N
21 C2' C1' C C sing 1.52 N N
22 C1' NBC C N sing 1.52 N N
23 NBC CAN N C sing 1.36 N Y
24 NBC CAW N C sing 1.34 N Y
25 CAN NBD C N doub 1.35 N Y
26 NBD CAA N C sing 1.48 N N
27 NBD CAX N C sing 1.35 N Y
28 CAX CAW C C doub 1.41 N Y
29 CAX CAV C C sing 1.41 N N
30 CAW CAM C C sing 1.39 N N
31 CAM CAU C C doub 1.38 N N
32 CAU NAB C N sing 1.33 N N
33 CAU NAP C N sing 1.41 N N
34 NAP CAV N C sing 1.4 N N
35 CAV OAC C O doub 1.23 N N
36 OAJ HAJ O H sing 0.95 N N
37 OAD HAD O H sing 0.95 N N
38 OAL HAL O H sing 0.95 N N
39 OAK HAK O H sing 0.95 N N
40 C5' H51 C H sing 1.1 N N
41 C5' H52 C H sing 1.1 N N
42 C4' H4 C H sing 1.1 N N
43 C3' H3 C H sing 1.1 N N
44 C1' H1 C H sing 1.1 N N
45 O3' HA O H sing 0.95 N N
46 C2' H2 C H sing 1.1 N N
47 O2' HB O H sing 0.95 N N
48 CAN HAN C H sing 1.08 N N
49 CAA HAA1 C H sing 1.1 N N
50 CAA HAA2 C H sing 1.1 N N
51 CAA HAA3 C H sing 1.1 N N
52 CAM HAM C H sing 1.08 N N
53 NAB HAB1 N H sing 1.0 N N
54 NAB HAB2 N H sing 1.0 N N
55 NAP HAP N H sing 1.0 N N