data_MGO
#
_chem_comp.id MGO
_chem_comp.name
"[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H20 N4 O14 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2007-08-16
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 537.227
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MGO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2V8W
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MGO OAJ OAJ O 0 1 N N N N N N 39.360 13.840 56.203 39.360 13.840 56.203 OAJ MGO 1
MGO PBE PBE P 0 1 N N N N N N 39.809 12.621 57.209 39.809 12.621 57.209 PBE MGO 2
MGO OAD OAD O 0 1 N N N N N N 41.013 13.333 58.094 41.013 13.333 58.094 OAD MGO 3
MGO OAI OAI O 0 1 N N N N N N 40.204 11.381 56.451 40.204 11.381 56.451 OAI MGO 4
MGO OAS OAS O 0 1 N N N N N N 38.550 12.313 58.241 38.550 12.313 58.241 OAS MGO 5
MGO PBG PBG P 0 1 N N S N N N 37.334 13.331 58.492 37.334 13.331 58.492 PBG MGO 6
MGO OAL OAL O 0 1 N N N N N N 36.709 12.706 59.842 36.709 12.706 59.842 OAL MGO 7
MGO OAF OAF O 0 1 N N N N N N 37.742 14.749 58.586 37.742 14.749 58.586 OAF MGO 8
MGO OAT OAT O 0 1 N N N N N N 36.328 13.159 57.302 36.328 13.159 57.302 OAT MGO 9
MGO PBF PBF P 0 1 N N S N N N 35.220 12.025 57.225 35.220 12.025 57.225 PBF MGO 10
MGO OAK OAK O 0 1 N N N N N N 34.478 12.421 55.821 34.478 12.421 55.821 OAK MGO 11
MGO OAE OAE O 0 1 N N N N N N 34.308 12.067 58.400 34.308 12.067 58.400 OAE MGO 12
MGO "O5'" O5* O 0 1 N N N N N N 35.955 10.598 57.058 35.955 10.598 57.058 "O5'" MGO 13
MGO "C5'" C5* C 0 1 N N N N N N 36.412 9.839 58.174 36.412 9.839 58.174 "C5'" MGO 14
MGO "C4'" C4* C 0 1 N N R N N N 36.057 8.371 58.092 36.057 8.371 58.092 "C4'" MGO 15
MGO "O4'" O4* O 0 1 N N N N N N 34.635 8.287 58.311 34.635 8.287 58.311 "O4'" MGO 16
MGO "C3'" C3* C 0 1 N N S N N N 36.225 7.767 56.695 36.225 7.767 56.695 "C3'" MGO 17
MGO "O3'" O3* O 0 1 N N N N N N 37.545 7.345 56.512 37.545 7.345 56.512 "O3'" MGO 18
MGO "C2'" C2* C 0 1 N N R N N N 35.315 6.568 56.806 35.315 6.568 56.806 "C2'" MGO 19
MGO "O2'" O2* O 0 1 N N N N N N 35.803 5.658 57.775 35.803 5.658 57.775 "O2'" MGO 20
MGO "C1'" C1* C 0 1 N N R N N N 34.093 7.234 57.417 34.093 7.234 57.417 "C1'" MGO 21
MGO NBC NBC N 0 1 Y N N N N N 33.142 7.757 56.356 33.142 7.757 56.356 NBC MGO 22
MGO CAN CAN C 0 1 Y N N N N N 32.921 9.049 56.002 32.921 9.049 56.002 CAN MGO 23
MGO NBD NBD N 1 1 Y N N N N N 31.971 9.057 55.042 31.971 9.057 55.042 NBD MGO 24
MGO CAA CAA C 0 1 N N N N N N 31.461 10.276 54.384 31.461 10.276 54.384 CAA MGO 25
MGO CAX CAX C 0 1 Y N N N N N 31.581 7.795 54.768 31.581 7.795 54.768 CAX MGO 26
MGO CAW CAW C 0 1 Y N N N N N 32.341 6.972 55.616 32.341 6.972 55.616 CAW MGO 27
MGO CAM CAM C 0 1 N N N N N N 32.199 5.589 55.602 32.199 5.589 55.602 CAM MGO 28
MGO CAU CAU C 0 1 N N N N N N 31.298 5.014 54.728 31.298 5.014 54.728 CAU MGO 29
MGO NAB NAB N 0 1 N N N N N N 31.178 3.689 54.713 31.178 3.689 54.713 NAB MGO 30
MGO NAP NAP N 0 1 N N N N N N 30.532 5.814 53.853 30.532 5.814 53.853 NAP MGO 31
MGO CAV CAV C 0 1 N N N N N N 30.675 7.206 53.862 30.675 7.206 53.862 CAV MGO 32
MGO OAC OAC O 0 1 N N N N N N 29.987 7.866 53.090 29.987 7.866 53.090 OAC MGO 33
MGO HAJ HAJ H 0 1 N N N N N N 39.273 14.645 56.700 39.273 14.645 56.700 HAJ MGO 34
MGO HAD HAD H 0 1 N N N N N N 41.774 13.469 57.542 41.774 13.469 57.542 HAD MGO 35
MGO HAL HAL H 0 1 N N N N N N 36.586 11.771 59.731 36.586 11.771 59.731 HAL MGO 36
MGO HAK HAK H 0 1 N N N N N N 33.542 12.498 55.967 33.542 12.498 55.967 HAK MGO 37
MGO H51 1H5* H 0 1 N N N N N N 37.508 9.924 58.221 37.508 9.924 58.221 H51 MGO 38
MGO H52 2H5* H 0 1 N N N N N N 35.916 10.244 59.068 35.916 10.244 59.068 H52 MGO 39
MGO H4 H4* H 0 1 N N N N N N 36.708 7.846 58.807 36.708 7.846 58.807 H4 MGO 40
MGO H3 H3* H 0 1 N N N N N N 36.000 8.450 55.863 36.000 8.450 55.863 H3 MGO 41
MGO H1 H1* H 0 1 N N N N N N 33.472 6.528 57.988 33.472 6.529 57.988 H1 MGO 42
MGO HA HA H 0 1 N N N N N N 37.721 7.249 55.583 37.722 7.249 55.583 HA MGO 43
MGO H2 H2* H 0 1 N N N N N N 35.181 6.018 55.863 35.181 6.018 55.863 H2 MGO 44
MGO HB HB H 0 1 N N N N N N 35.912 4.801 57.379 35.912 4.801 57.379 HB MGO 45
MGO HAN HAN H 0 1 N N N N N N 33.416 9.916 56.414 33.416 9.916 56.414 HAN MGO 46
MGO HAA1 1HAA H 0 0 N N N N N N 31.334 11.072 55.133 31.334 11.072 55.133 HAA1 MGO 47
MGO HAA2 2HAA H 0 0 N N N N N N 32.177 10.605 53.617 32.177 10.605 53.617 HAA2 MGO 48
MGO HAA3 3HAA H 0 0 N N N N N N 30.491 10.059 53.912 30.491 10.059 53.912 HAA3 MGO 49
MGO HAM HAM H 0 1 N N N N N N 32.786 4.972 56.266 32.786 4.972 56.266 HAM MGO 50
MGO HAB1 1HAB H 0 0 N N N N N N 31.148 3.367 53.767 31.148 3.367 53.767 HAB1 MGO 51
MGO HAB2 2HAB H 0 0 N N N N N N 31.961 3.278 55.180 31.961 3.278 55.180 HAB2 MGO 52
MGO HAP HAP H 0 1 N N N N N N 29.884 5.384 53.224 29.884 5.384 53.224 HAP MGO 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MGO OAJ PBE SING N N 1
MGO PBE OAD SING N N 2
MGO PBE OAI DOUB N N 3
MGO PBE OAS SING N N 4
MGO OAS PBG SING N N 5
MGO PBG OAL SING N N 6
MGO PBG OAF DOUB N N 7
MGO PBG OAT SING N N 8
MGO OAT PBF SING N N 9
MGO PBF OAK SING N N 10
MGO PBF OAE DOUB N N 11
MGO PBF "O5'" SING N N 12
MGO "O5'" "C5'" SING N N 13
MGO "C5'" "C4'" SING N N 14
MGO "C4'" "O4'" SING N N 15
MGO "C4'" "C3'" SING N N 16
MGO "O4'" "C1'" SING N N 17
MGO "C3'" "O3'" SING N N 18
MGO "C3'" "C2'" SING N N 19
MGO "C2'" "O2'" SING N N 20
MGO "C2'" "C1'" SING N N 21
MGO "C1'" NBC SING N N 22
MGO NBC CAN SING Y N 23
MGO NBC CAW SING Y N 24
MGO CAN NBD DOUB Y N 25
MGO NBD CAA SING N N 26
MGO NBD CAX SING Y N 27
MGO CAX CAW DOUB Y N 28
MGO CAX CAV SING N N 29
MGO CAW CAM SING N N 30
MGO CAM CAU DOUB N N 31
MGO CAU NAB SING N N 32
MGO CAU NAP SING N N 33
MGO NAP CAV SING N N 34
MGO CAV OAC DOUB N N 35
MGO OAJ HAJ SING N N 36
MGO OAD HAD SING N N 37
MGO OAL HAL SING N N 38
MGO OAK HAK SING N N 39
MGO "C5'" H51 SING N N 40
MGO "C5'" H52 SING N N 41
MGO "C4'" H4 SING N N 42
MGO "C3'" H3 SING N N 43
MGO "C1'" H1 SING N N 44
MGO "O3'" HA SING N N 45
MGO "C2'" H2 SING N N 46
MGO "O2'" HB SING N N 47
MGO CAN HAN SING N N 48
MGO CAA HAA1 SING N N 49
MGO CAA HAA2 SING N N 50
MGO CAA HAA3 SING N N 51
MGO CAM HAM SING N N 52
MGO NAB HAB1 SING N N 53
MGO NAB HAB2 SING N N 54
MGO NAP HAP SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MGO SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n1c[n+](c2c1C=C(N)NC2=O)C)C(O)C3O
MGO SMILES_CANONICAL CACTVS 3.341 C[n+]1cn([C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O)c3C=C(N)NC(=O)c13
MGO SMILES CACTVS 3.341 C[n+]1cn([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)c3C=C(N)NC(=O)c13
MGO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[n+]1cn(c2c1C(=O)NC(=C2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)O
MGO SMILES "OpenEye OEToolkits" 1.5.0 C[n+]1cn(c2c1C(=O)NC(=C2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O
MGO InChI InChI 1.03 InChI=1S/C12H19N4O14P3/c1-15-4-16(5-2-7(13)14-11(19)8(5)15)12-10(18)9(17)6(28-12)3-27-32(23,24)30-33(25,26)29-31(20,21)22/h2,4,6,9-10,12,17-18H,3H2,1H3,(H6-,13,14,19,20,21,22,23,24,25,26)/p+1/t6-,9-,10-,12-/m1/s1
MGO InChIKey InChI 1.03 LPHBJZOLBGBNJF-XYHAGOFUSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MGO "SYSTEMATIC NAME" ACDLabs 10.04 6-amino-1-{5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-3-methyl-4-oxo-4,5-dihydro-1H-imidazo[4,5-c]pyridin-3-ium
MGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-amino-3-methyl-4-oxo-5H-imidazo[4,5-c]pyridin-3-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MGO 'Create component' 2007-08-16 RCSB
MGO 'Modify aromatic_flag' 2011-06-04 RCSB
MGO 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MGO OAJ O 21.201 4.589 1
MGO PBE P 19.986 3.710 2
MGO OAD O 20.865 2.495 3
MGO OAI O 19.106 4.925 4
MGO OAS O 18.771 2.830 5
MGO PBG P 17.401 3.442 6
MGO OAL O 18.014 4.812 7
MGO OAF O 16.789 2.073 8
MGO OAT O 16.032 4.055 9
MGO PBF P 14.817 3.175 10
MGO OAK O 15.697 1.960 11
MGO OAE O 13.938 4.391 12
MGO "O5'" O 13.602 2.296 13
MGO "C5'" C 12.233 2.908 14
MGO "C4'" C 11.018 2.029 15
MGO "O4'" O 11.015 0.529 16
MGO "C3'" C 9.592 2.495 17
MGO "O3'" O 9.131 3.922 18
MGO "C2'" C 8.708 1.283 19
MGO "O2'" O 7.208 1.285 20
MGO "C1'" C 9.588 0.068 21
MGO NBC N 9.122 -1.358 22
MGO CAN C 9.997 -2.565 23
MGO NBD N 9.122 -3.772 24
MGO CAA C 9.588 -5.198 25
MGO CAX C 7.702 -3.315 26
MGO CAW C 7.702 -1.815 27
MGO CAM C 6.404 -1.065 28
MGO CAU C 5.104 -1.815 29
MGO NAB N 3.805 -1.065 30
MGO NAP N 5.104 -3.315 31
MGO CAV C 6.404 -4.065 32
MGO OAC O 6.404 -5.565 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MGO OAJ PBE SINGLE NONE 1
MGO PBE OAD SINGLE NONE 2
MGO PBE OAI DOUBLE NONE 3
MGO PBE OAS SINGLE NONE 4
MGO OAS PBG SINGLE NONE 5
MGO PBG OAL SINGLE BEGINDASH 6
MGO PBG OAF DOUBLE NONE 7
MGO PBG OAT SINGLE NONE 8
MGO OAT PBF SINGLE NONE 9
MGO PBF OAK SINGLE BEGINDASH 10
MGO PBF OAE DOUBLE NONE 11
MGO PBF "O5'" SINGLE NONE 12
MGO "O5'" "C5'" SINGLE NONE 13
MGO "C4'" "C5'" SINGLE BEGINWEDGE 14
MGO "C4'" "O4'" SINGLE NONE 15
MGO "C4'" "C3'" SINGLE NONE 16
MGO "O4'" "C1'" SINGLE NONE 17
MGO "C3'" "O3'" SINGLE BEGINDASH 18
MGO "C3'" "C2'" SINGLE NONE 19
MGO "C2'" "O2'" SINGLE BEGINDASH 20
MGO "C2'" "C1'" SINGLE NONE 21
MGO "C1'" NBC SINGLE BEGINWEDGE 22
MGO NBC CAN SINGLE NONE 23
MGO NBC CAW SINGLE NONE 24
MGO CAN NBD DOUBLE NONE 25
MGO NBD CAA SINGLE NONE 26
MGO NBD CAX SINGLE NONE 27
MGO CAX CAW DOUBLE NONE 28
MGO CAX CAV SINGLE NONE 29
MGO CAW CAM SINGLE NONE 30
MGO CAM CAU DOUBLE NONE 31
MGO CAU NAB SINGLE NONE 32
MGO CAU NAP SINGLE NONE 33
MGO NAP CAV SINGLE NONE 34
MGO CAV OAC DOUBLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MGO MurckoScaffold S1 scaffold 'O=c1[nH]ccc2c1[nH+]cn2[C@H]1CCCO1' InChI=1S/C10H11N3O2/c14-10-9-7(3-4-11-10)13(6-12-9)8-2-1-5-15-8/h3-4,6,8H,1-2,5H2,(H,11,14)/p+1/t8-/m1/s1 JVCAJSVNMMYBKB-MRVPVSSYSA-O
MGO imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
MGO phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
MGO pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
MGO ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MGO "C4'" S1 1
MGO "O4'" S1 1
MGO "C3'" S1 1
MGO "C2'" S1 1
MGO "C1'" S1 1
MGO NBC S1 1
MGO CAN S1 1
MGO NBD S1 1
MGO CAX S1 1
MGO CAW S1 1
MGO CAM S1 1
MGO CAU S1 1
MGO NAP S1 1
MGO CAV S1 1
MGO OAC S1 1
MGO CAX F1 1
MGO CAW F1 1
MGO NBC F1 1
MGO CAN F1 1
MGO NBD F1 1
MGO OAJ F2 1
MGO PBE F2 1
MGO OAI F2 1
MGO OAD F2 1
MGO OAS F2 1
MGO OAS F2 2
MGO PBG F2 2
MGO OAF F2 2
MGO OAL F2 2
MGO OAT F2 2
MGO OAT F2 3
MGO PBF F2 3
MGO OAE F2 3
MGO OAK F2 3
MGO "O5'" F2 3
MGO CAU F3 1
MGO CAM F3 1
MGO CAW F3 1
MGO CAX F3 1
MGO CAV F3 1
MGO NAP F3 1
MGO "C2'" F4 1
MGO "C3'" F4 1
MGO "C4'" F4 1
MGO "O4'" F4 1
MGO "C1'" F4 1
MGO "C5'" F4 1
MGO "O5'" F4 1
MGO "O3'" F4 1
MGO "O2'" F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MGO
_pdbe_chem_comp_rdkit_properties.exactmw 537.018
_pdbe_chem_comp_rdkit_properties.amw 537.228
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 53
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 211.529
_pdbe_chem_comp_rdkit_properties.tpsa 277.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.210
_pdbe_chem_comp_rdkit_properties.CrippenMR 100.965
_pdbe_chem_comp_rdkit_properties.chi0v 17.529
_pdbe_chem_comp_rdkit_properties.chi1v 11.810
_pdbe_chem_comp_rdkit_properties.chi2v 6.685
_pdbe_chem_comp_rdkit_properties.chi3v 6.685
_pdbe_chem_comp_rdkit_properties.chi4v 4.807
_pdbe_chem_comp_rdkit_properties.chi0n 34.846
_pdbe_chem_comp_rdkit_properties.chi1n 16.719
_pdbe_chem_comp_rdkit_properties.chi2n 3.170
_pdbe_chem_comp_rdkit_properties.chi3n 3.170
_pdbe_chem_comp_rdkit_properties.chi4n 2.132
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.490
_pdbe_chem_comp_rdkit_properties.kappa1 10.244
_pdbe_chem_comp_rdkit_properties.kappa2 8.942
_pdbe_chem_comp_rdkit_properties.kappa3 5.959
_pdbe_chem_comp_rdkit_properties.Phi 2.776
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MGO UniChem ZINC ZINC000016052587
MGO UniChem PubChem 16750126
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MGO OAJ 6.794 -0.356 -1.170 ETKDGv3 1
MGO PBE 5.769 -1.282 -2.150 ETKDGv3 2
MGO OAD 6.493 -1.477 -3.667 ETKDGv3 3
MGO OAI 4.456 -0.554 -2.334 ETKDGv3 4
MGO OAS 5.490 -2.821 -1.477 ETKDGv3 5
MGO PBG 5.062 -2.607 0.157 ETKDGv3 6
MGO OAL 4.463 -4.089 0.724 ETKDGv3 7
MGO OAF 6.297 -2.229 0.946 ETKDGv3 8
MGO OAT 3.874 -1.392 0.297 ETKDGv3 9
MGO PBF 3.292 -1.399 1.899 ETKDGv3 10
MGO OAK 4.572 -1.345 3.005 ETKDGv3 11
MGO OAE 2.471 -2.645 2.149 ETKDGv3 12
MGO "O5'" 2.312 -0.027 2.154 ETKDGv3 13
MGO "C5'" 1.356 0.037 1.121 ETKDGv3 14
MGO "C4'" 0.391 1.195 1.389 ETKDGv3 15
MGO "O4'" -0.533 1.290 0.331 ETKDGv3 16
MGO "C3'" -0.394 1.005 2.687 ETKDGv3 17
MGO "O3'" 0.279 1.493 3.826 ETKDGv3 18
MGO "C2'" -1.695 1.719 2.407 ETKDGv3 19
MGO "O2'" -1.652 3.046 2.869 ETKDGv3 20
MGO "C1'" -1.775 1.693 0.873 ETKDGv3 21
MGO NBC -2.819 0.774 0.414 ETKDGv3 22
MGO CAN -2.893 -0.627 0.719 ETKDGv3 23
MGO NBD -3.571 -1.297 -0.161 ETKDGv3 24
MGO CAA -3.738 -2.746 -0.198 ETKDGv3 25
MGO CAX -3.949 -0.356 -1.159 ETKDGv3 26
MGO CAW -3.503 0.839 -0.837 ETKDGv3 27
MGO CAM -3.656 2.005 -1.731 ETKDGv3 28
MGO CAU -4.278 1.848 -2.918 ETKDGv3 29
MGO NAB -4.441 2.964 -3.796 ETKDGv3 30
MGO NAP -4.778 0.549 -3.311 ETKDGv3 31
MGO CAV -4.615 -0.585 -2.444 ETKDGv3 32
MGO OAC -5.027 -1.724 -2.786 ETKDGv3 33
MGO HAJ 7.655 -0.846 -1.171 ETKDGv3 34
MGO HAD 7.298 -2.027 -3.492 ETKDGv3 35
MGO HAL 4.801 -4.172 1.651 ETKDGv3 36
MGO HAK 4.999 -0.464 2.852 ETKDGv3 37
MGO H51 0.768 -0.908 1.050 ETKDGv3 38
MGO H52 1.857 0.228 0.146 ETKDGv3 39
MGO H4 0.975 2.143 1.418 ETKDGv3 40
MGO H3 -0.611 -0.074 2.846 ETKDGv3 41
MGO H1 -2.004 2.714 0.500 ETKDGv3 42
MGO HA 0.613 2.407 3.631 ETKDGv3 43
MGO H2 -2.542 1.177 2.891 ETKDGv3 44
MGO HB -2.583 3.388 2.833 ETKDGv3 45
MGO HAN -2.392 -1.089 1.560 ETKDGv3 46
MGO HAA1 -4.791 -2.997 -0.443 ETKDGv3 47
MGO HAA2 -3.493 -3.194 0.790 ETKDGv3 48
MGO HAA3 -3.066 -3.178 -0.968 ETKDGv3 49
MGO HAM -3.278 2.974 -1.433 ETKDGv3 50
MGO HAB1 -4.087 3.912 -3.538 ETKDGv3 51
MGO HAB2 -4.920 2.843 -4.716 ETKDGv3 52
MGO HAP -5.254 0.430 -4.234 ETKDGv3 53
#