Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : KG4    

Bonds between two atoms of the molecule

Total Number of Bonds: 42


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N6 C6 N C sing 1.38 N N
2 N7 C8 N C doub 1.3 N Y
3 N7 C5 N C sing 1.35 N Y
4 C8 N9 C N sing 1.36 N Y
5 C6 C5 C C doub 1.4 N Y
6 C6 N1 C N sing 1.33 N Y
7 C5 C4 C C sing 1.4 N Y
8 O2A PA O P doub 1.48 N N
9 N1 C2 N C doub 1.32 N Y
10 N9 C4 N C sing 1.37 N Y
11 N9 C1' N C sing 1.47 N N
12 C4 N3 C N doub 1.33 N Y
13 O1A PA O P sing 1.61 N N
14 C2' O2' C O sing 1.43 N N
15 C2' C1' C C sing 1.54 N N
16 C2' C3' C C sing 1.55 N N
17 PA O5' P O sing 1.61 N N
18 PA O3A P O sing 1.61 N N
19 C2 N3 C N sing 1.32 N Y
20 C1' O4' C O sing 1.45 N N
21 C5' O5' C O sing 1.43 N N
22 C5' C4' C C sing 1.53 N N
23 O4' C4' O C sing 1.44 N N
24 C3' C4' C C sing 1.54 N N
25 C3' O3' C O sing 1.43 N N
26 O3A CB O C sing 1.35 N N
27 O2B CB O C doub 1.21 N N
28 CB O1B C O sing 1.35 N N
29 O1A H1 O H sing 0.97 N N
30 O1B H2 O H sing 0.97 N N
31 C5' H3 C H sing 1.09 N N
32 C5' H4 C H sing 1.09 N N
33 C4' H5 C H sing 1.09 N N
34 C3' H6 C H sing 1.09 N N
35 O3' H7 O H sing 0.97 N N
36 C2' H8 C H sing 1.09 N N
37 O2' H9 O H sing 0.97 N N
38 C1' H10 C H sing 1.09 N N
39 C8 H11 C H sing 1.08 N N
40 C2 H12 C H sing 1.08 N N
41 N6 H13 N H sing 0.97 N N
42 N6 H14 N H sing 0.97 N N