Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KG4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1A O O1 N N N 0 -3.984 0.987 1.611
2 PA P P1 N N N 0 -4.114 0.126 0.257
3 O2A O O2 N N N 0 -4.974 -1.053 0.503
4 O3A O O3 N N N 0 -4.769 1.036 -0.898
5 CB C C1 N N N 0 -6.037 1.443 -0.709
6 O2B O O4 N N N 0 -6.635 1.121 0.298
7 O1B O O5 N N N 0 -6.644 2.206 -1.636
8 O5' O O6 N N N 0 -2.653 -0.364 -0.21
9 C5' C C2 N N N 0 -1.856 -1.273 0.552
10 C4' C C3 R N N 0 -0.533 -1.525 -0.174
11 C3' C C4 S N N 0 0.308 -2.572 0.588
12 O3' O O7 N N N 0 0.155 -3.864 -0.004
13 C2' C C5 R N N 0 1.762 -2.073 0.431
14 O2' O O8 N N N 0 2.551 -3.041 -0.263
15 C1' C C6 R N N 0 1.627 -0.783 -0.408
16 O4' O O9 N N N 0 0.275 -0.328 -0.174
17 N9 N N1 N Y N 0 2.59 0.224 0.045
18 C4 C C7 N Y N 0 3.899 0.332 -0.353
19 C5 C C8 N Y N 0 4.424 1.435 0.341
20 N7 N N2 N Y N 0 3.428 1.934 1.112
21 C8 C C9 N Y N 0 2.349 1.227 0.935
22 N3 N N3 N Y N 0 4.685 -0.341 -1.186
23 C2 C C10 N Y N 0 5.939 0.017 -1.362
24 N1 N N4 N Y N 0 6.477 1.046 -0.733
25 C6 C C11 N Y N 0 5.768 1.779 0.119
26 N6 N N5 N N N 0 6.341 2.855 0.774
27 H1 H H1 N N N 0 -3.433 1.777 1.523
28 H2 H H2 N N N 0 -7.556 2.474 -1.456
29 H3 H H3 N N N 0 -1.656 -0.846 1.535
30 H4 H H4 N N N 0 -2.392 -2.216 0.668
31 H5 H H5 N N N 0 -0.719 -1.857 -1.195
32 H6 H H6 N N N 0 0.023 -2.599 1.64
33 H7 H H7 N N N 0 0.662 -4.56 0.436
34 H8 H H8 N N N 0 2.198 -1.851 1.404
35 H9 H H9 N N N 0 2.668 -3.871 0.218
36 H10 H H10 N N N 0 1.774 -1.001 -1.466
37 H11 H H11 N N N 0 1.404 1.406 1.427
38 H12 H H12 N N N 0 6.551 -0.551 -2.047
39 H13 H H13 N N N 0 5.814 3.382 1.395
40 H14 H H14 N N N 0 7.27 3.083 0.613