Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : IOO    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 P O P doub 1.48 N N
2 P OP3 P O sing 1.61 N N
3 P O5' P O sing 1.61 N N
4 P OP2 P O sing 1.61 N N
5 O5' C5' O C sing 1.43 N N
6 C5' C4' C C sing 1.53 N N
7 O3' C3' O C sing 1.43 N N
8 C3' C4' C C sing 1.54 N N
9 C3' C3 C C sing 1.55 N N
10 C4' O4' C O sing 1.44 N N
11 O4' C2 O C sing 1.44 N N
12 C3 O2' C O sing 1.43 N N
13 C3 C2 C C sing 1.55 N N
14 C2 N9 C N sing 1.46 N N
15 C8 N9 C N sing 1.36 N Y
16 C8 N7 C N doub 1.3 N Y
17 N9 C1' N C sing 1.37 N Y
18 C14 C13 C C doub 1.38 N Y
19 C14 C12 C C sing 1.38 N Y
20 C13 C15 C C sing 1.38 N Y
21 N7 C11 N C sing 1.47 N N
22 N7 C1 N C sing 1.36 N Y
23 C1' N3 C N sing 1.34 N N
24 C1' C1 C C doub 1.4 N Y
25 C11 C12 C C sing 1.51 N N
26 C12 C16 C C doub 1.38 N Y
27 N3 C2' N C doub 1.31 N N
28 C1 C6 C C sing 1.41 N N
29 C15 F1 C F sing 1.35 N N
30 C15 C17 C C doub 1.39 N Y
31 C16 C17 C C sing 1.38 N Y
32 C2' N1 C N sing 1.37 N N
33 C2' N4 C N sing 1.36 N N
34 C17 F2 C F sing 1.35 N N
35 C6 N4 C N sing 1.35 N N
36 C6 OP1 C O doub 1.22 N N
37 N1 H21 N H sing 0.97 N N
38 N1 H22 N H sing 0.97 N N
39 N4 H1 N H sing 0.97 N N
40 C2 H1' C H sing 1.09 N N
41 C3 H2' C H sing 1.09 N N
42 C3' H3' C H sing 1.09 N N
43 C4' H4' C H sing 1.09 N N
44 C5' H5' C H sing 1.09 N N
45 C5' H5'' C H sing 1.09 N N
46 C8 H8 C H sing 1.08 N N
47 C11 H11 C H sing 1.09 N N
48 C11 H12 C H sing 1.09 N N
49 C13 H13 C H sing 1.08 N N
50 C14 H14 C H sing 1.08 N N
51 C16 H15 C H sing 1.08 N N
52 O2' HO2' O H sing 0.97 N N
53 O3' HO3' O H sing 0.97 N N
54 OP3 HOP3 O H sing 0.97 N N
55 OP2 HOP2 O H sing 0.97 N N