data_IOO
#
_chem_comp.id IOO
_chem_comp.name " N7-(3,4-difluorobenzyl) guanosine 5'-monophosphate"
_chem_comp.type "L-RNA linking"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C17 H19 F2 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id G
_chem_comp.pdbx_synonyms
"[(2R,3S,4R,5R)-5-[2-azanyl-7-[[3,4-bis(fluoranyl)phenyl]methyl]-6-oxidanylidene-1H-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2022-04-04
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 490.332
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IOO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ZEG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IOO "C2'" C2 C 0 1 N N N N N N 3.021 -22.020 9.641 3.147 -3.622 -0.758 "C2'" IOO 1
IOO C1 C5 C 0 1 Y N N N N N 0.548 -21.627 8.560 2.466 -1.352 0.560 C1 IOO 2
IOO "C1'" C4 C 0 1 Y N N N N N 1.632 -21.782 7.795 1.512 -2.122 -0.115 "C1'" IOO 3
IOO N1 N2 N 0 1 N N N N N N 4.233 -22.222 10.153 3.487 -4.771 -1.426 N1 IOO 4
IOO N4 N1 N 0 1 N N N N N N 1.921 -21.879 10.470 4.121 -2.912 -0.123 N4 IOO 5
IOO C2 "C1'" C 0 1 N N R N N N 2.214 -21.813 5.395 -0.984 -1.918 -0.460 C2 IOO 6
IOO C3 "C2'" C 0 1 N N R N N N 1.855 -23.080 4.591 -1.660 -2.914 0.516 C3 IOO 7
IOO "C3'" "C3'" C 0 1 N N S N N N 2.326 -22.757 3.173 -3.158 -2.747 0.164 "C3'" IOO 8
IOO "C4'" "C4'" C 0 1 N N R N N N 2.695 -21.268 3.276 -3.233 -1.370 -0.525 "C4'" IOO 9
IOO "C5'" "C5'" C 0 1 N N N N N N 2.095 -20.585 2.059 -4.195 -0.458 0.240 "C5'" IOO 10
IOO C6 C6 C 0 1 N N N N N N 0.669 -21.685 9.892 3.815 -1.776 0.542 C6 IOO 11
IOO C8 C8 C 0 1 Y N N N N N -0.045 -21.496 6.490 0.549 -0.376 0.823 C8 IOO 12
IOO C11 CAY C 0 1 N N N N N N -1.949 -21.220 8.062 2.439 0.759 1.911 C11 IOO 13
IOO C12 CAZ C 0 1 Y N N N N N -2.219 -19.847 8.255 2.983 1.827 0.997 C12 IOO 14
IOO C13 CBA C 0 1 Y N N N N N -3.077 -17.737 7.419 4.778 2.713 -0.318 C13 IOO 15
IOO C14 CBB C 0 1 Y N N N N N -2.793 -19.091 7.237 4.277 1.735 0.521 C14 IOO 16
IOO C15 CBC C 0 1 Y N N N N N -2.787 -17.135 8.641 3.983 3.786 -0.682 C15 IOO 17
IOO C16 CBD C 0 1 Y N N N N N -1.942 -19.239 9.476 2.184 2.894 0.631 C16 IOO 18
IOO C17 CBE C 0 1 Y N N N N N -2.219 -17.887 9.666 2.683 3.875 -0.208 C17 IOO 19
IOO F1 FBF F 0 1 N N N N N N -3.062 -15.790 8.835 4.473 4.745 -1.497 F1 IOO 20
IOO F2 FBG F 0 1 N N N N N N -1.927 -17.284 10.893 1.905 4.922 -0.562 F2 IOO 21
IOO N3 N3 N 0 1 N N N N N N 2.849 -21.954 8.321 1.890 -3.236 -0.753 N3 IOO 22
IOO N7 N7 N 1 1 Y N N N N N -0.497 -21.454 7.744 1.815 -0.298 1.110 N7 IOO 23
IOO N9 N9 N 0 1 Y N N N N N 1.274 -21.663 6.529 0.314 -1.484 0.062 N9 IOO 24
IOO "O2'" "O2'" O 0 1 N N N N N N 2.511 -24.262 5.107 -1.223 -4.251 0.264 "O2'" IOO 25
IOO "O3'" "O3'" O 0 1 N N N N N N 3.503 -23.509 2.809 -3.583 -3.777 -0.730 "O3'" IOO 26
IOO "O4'" "O4'" O 0 1 N N N N N N 1.993 -20.824 4.414 -1.908 -0.809 -0.510 "O4'" IOO 27
IOO "O5'" "O5'" O 0 1 N N N N N N 2.357 -19.151 2.053 -4.347 0.774 -0.469 "O5'" IOO 28
IOO OP1 O6 O 0 1 N N N N N N -0.299 -21.559 10.638 4.680 -1.134 1.113 OP1 IOO 29
IOO O1 OAT O 0 1 N N N N N N 3.694 -18.717 0.083 -4.901 2.346 1.426 O1 IOO 30
IOO OP3 OAU O 0 1 N Y N N N N 3.604 -17.018 1.758 -5.121 3.245 -0.923 OP3 IOO 31
IOO OP2 OAV O 0 1 N N N N N N 5.022 -19.012 2.212 -6.826 1.489 0.036 OP2 IOO 32
IOO P PAS P 0 1 N N N N N N 3.750 -18.523 1.576 -5.290 1.972 0.048 P IOO 33
IOO H21 H1 H 0 1 N N N N N N 5.021 -22.325 9.546 4.411 -5.068 -1.442 H21 IOO 34
IOO H22 H2 H 0 1 N N N N N N 4.355 -22.271 11.144 2.805 -5.288 -1.883 H22 IOO 35
IOO H1 H3 H 0 1 N N N N N N 2.024 -21.916 11.464 5.040 -3.223 -0.149 H1 IOO 36
IOO "H1'" H4 H 0 1 N N N N N N 3.259 -21.850 5.736 -0.869 -2.366 -1.447 "H1'" IOO 37
IOO "H2'" H5 H 0 1 N N N N N N 0.763 -23.213 4.592 -1.469 -2.633 1.552 "H2'" IOO 38
IOO "H3'" H6 H 0 1 N N N N N N 1.508 -22.901 2.452 -3.764 -2.753 1.071 "H3'" IOO 39
IOO "H4'" H7 H 0 1 N N N N N N 3.783 -21.120 3.338 -3.571 -1.489 -1.554 "H4'" IOO 40
IOO "H5'" H8 H 0 1 N N N N N N 1.007 -20.747 2.061 -5.164 -0.947 0.331 "H5'" IOO 41
IOO "H5''" H9 H 0 0 N N N N N N 2.530 -21.029 1.152 -3.793 -0.258 1.233 "H5''" IOO 42
IOO H8 H10 H 0 1 N N N N N N -0.646 -21.409 5.597 -0.205 0.330 1.140 H8 IOO 43
IOO H11 H11 H 0 1 N N N N N N -2.563 -21.592 7.228 3.253 0.336 2.500 H11 IOO 44
IOO H12 H12 H 0 1 N N N N N N -2.207 -21.768 8.980 1.696 1.196 2.578 H12 IOO 45
IOO H13 H13 H 0 1 N N N N N N -3.518 -17.161 6.619 5.791 2.642 -0.686 H13 IOO 46
IOO H14 H14 H 0 1 N N N N N N -3.022 -19.560 6.291 4.898 0.898 0.804 H14 IOO 47
IOO H15 H15 H 0 1 N N N N N N -1.511 -19.818 10.279 1.172 2.963 1.000 H15 IOO 48
IOO "HO2'" H16 H 0 0 N N N N N N 2.200 -24.439 5.987 -1.618 -4.911 0.850 "HO2'" IOO 49
IOO "HO3'" H17 H 0 0 N Y N N N N 3.283 -24.431 2.743 -3.556 -4.665 -0.348 "HO3'" IOO 50
IOO HOP3 H18 H 0 0 N Y N N N N 3.518 -16.603 0.908 -5.661 4.007 -0.671 HOP3 IOO 51
IOO HOP2 H19 H 0 0 N N N N N N 5.593 -19.372 1.543 -7.150 1.228 -0.837 HOP2 IOO 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IOO O1 P DOUB N N 1
IOO P OP3 SING N N 2
IOO P "O5'" SING N N 3
IOO P OP2 SING N N 4
IOO "O5'" "C5'" SING N N 5
IOO "C5'" "C4'" SING N N 6
IOO "O3'" "C3'" SING N N 7
IOO "C3'" "C4'" SING N N 8
IOO "C3'" C3 SING N N 9
IOO "C4'" "O4'" SING N N 10
IOO "O4'" C2 SING N N 11
IOO C3 "O2'" SING N N 12
IOO C3 C2 SING N N 13
IOO C2 N9 SING N N 14
IOO C8 N9 SING Y N 15
IOO C8 N7 DOUB Y N 16
IOO N9 "C1'" SING Y N 17
IOO C14 C13 DOUB Y N 18
IOO C14 C12 SING Y N 19
IOO C13 C15 SING Y N 20
IOO N7 C11 SING N N 21
IOO N7 C1 SING Y N 22
IOO "C1'" N3 SING N N 23
IOO "C1'" C1 DOUB Y N 24
IOO C11 C12 SING N N 25
IOO C12 C16 DOUB Y N 26
IOO N3 "C2'" DOUB N N 27
IOO C1 C6 SING N N 28
IOO C15 F1 SING N N 29
IOO C15 C17 DOUB Y N 30
IOO C16 C17 SING Y N 31
IOO "C2'" N1 SING N N 32
IOO "C2'" N4 SING N N 33
IOO C17 F2 SING N N 34
IOO C6 N4 SING N N 35
IOO C6 OP1 DOUB N N 36
IOO N1 H21 SING N N 37
IOO N1 H22 SING N N 38
IOO N4 H1 SING N N 39
IOO C2 "H1'" SING N N 40
IOO C3 "H2'" SING N N 41
IOO "C3'" "H3'" SING N N 42
IOO "C4'" "H4'" SING N N 43
IOO "C5'" "H5'" SING N N 44
IOO "C5'" "H5''" SING N N 45
IOO C8 H8 SING N N 46
IOO C11 H11 SING N N 47
IOO C11 H12 SING N N 48
IOO C13 H13 SING N N 49
IOO C14 H14 SING N N 50
IOO C16 H15 SING N N 51
IOO "O2'" "HO2'" SING N N 52
IOO "O3'" "HO3'" SING N N 53
IOO OP3 HOP3 SING N N 54
IOO OP2 HOP2 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IOO InChI InChI 1.06 InChI=1S/C17H18F2N5O8P/c18-8-2-1-7(3-9(8)19)4-23-6-24(14-11(23)15(27)22-17(20)21-14)16-13(26)12(25)10(32-16)5-31-33(28,29)30/h1-3,6,10,12-13,16,25-26H,4-5H2,(H4-,20,21,22,27,28,29,30)/p+1/t10-,12-,13-,16-/m1/s1
IOO InChIKey InChI 1.06 BIHPVAUGYOUOAQ-XNIJJKJLSA-O
IOO SMILES_CANONICAL CACTVS 3.385 NC1=Nc2n(c[n+](Cc3ccc(F)c(F)c3)c2C(=O)N1)[C@@H]4O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]4O
IOO SMILES CACTVS 3.385 NC1=Nc2n(c[n+](Cc3ccc(F)c(F)c3)c2C(=O)N1)[CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O
IOO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1C[n+]2cn(c3c2C(=O)NC(=N3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)F)F
IOO SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1C[n+]2cn(c3c2C(=O)NC(=N3)N)C4C(C(C(O4)COP(=O)(O)O)O)O)F)F
#
_pdbx_chem_comp_identifier.comp_id IOO
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[[3,4-bis(fluoranyl)phenyl]methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id IOO
_pdbx_chem_comp_synonyms.name
"[(2R,3S,4R,5R)-5-[2-azanyl-7-[[3,4-bis(fluoranyl)phenyl]methyl]-6-oxidanylidene-1H-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IOO 'Create component' 2022-04-04 PDBE
IOO 'Modify linking type' 2022-04-05 PDBE
IOO 'Initial release' 2022-04-13 RCSB
IOO 'Modify descriptor' 2022-08-22 RCSB
#
_pdbe_chem_comp_synonyms.comp_id IOO
_pdbe_chem_comp_synonyms.name
'[(2R,3S,4R,5R)-5-[2-azanyl-7-[[3,4-bis(fluoranyl)phenyl]methyl]-6-oxidanylidene-1H-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IOO "C2'" C 5.104 1.866 1
IOO C1 C 7.702 3.366 2
IOO "C1'" C 7.702 1.866 3
IOO N1 N 3.805 1.116 4
IOO N4 N 5.104 3.366 5
IOO C2 C 9.588 -0.017 6
IOO C3 C 8.708 -1.232 7
IOO "C3'" C 9.592 -2.444 8
IOO "C4'" C 11.018 -1.978 9
IOO "C5'" C 12.233 -2.858 10
IOO C6 C 6.404 4.116 11
IOO C8 C 9.997 2.616 12
IOO C11 C 9.588 5.249 13
IOO C12 C 11.056 5.558 14
IOO C13 C 12.989 7.293 15
IOO C14 C 11.522 6.984 16
IOO C15 C 13.991 6.177 17
IOO C16 C 12.057 4.442 18
IOO C17 C 13.525 4.751 19
IOO F1 F 15.459 6.486 20
IOO F2 F 14.527 3.635 21
IOO N3 N 6.404 1.116 22
IOO N7 N 9.122 3.823 23
IOO N9 N 9.122 1.409 24
IOO "O2'" O 7.208 -1.235 25
IOO "O3'" O 9.131 -3.871 26
IOO "O4'" O 11.015 -0.478 27
IOO "O5'" O 12.079 -4.350 28
IOO OP1 O 6.404 5.616 29
IOO O1 O 14.509 -6.109 30
IOO OP3 O 12.414 -6.444 31
IOO OP2 O 14.173 -4.014 32
IOO P P 13.294 -5.229 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IOO O1 P DOUBLE NONE 1
IOO P OP3 SINGLE NONE 2
IOO P "O5'" SINGLE NONE 3
IOO P OP2 SINGLE NONE 4
IOO "O5'" "C5'" SINGLE NONE 5
IOO "C4'" "C5'" SINGLE BEGINDASH 6
IOO "C3'" "O3'" SINGLE BEGINWEDGE 7
IOO "C3'" "C4'" SINGLE NONE 8
IOO "C3'" C3 SINGLE NONE 9
IOO "C4'" "O4'" SINGLE NONE 10
IOO "O4'" C2 SINGLE NONE 11
IOO C3 "O2'" SINGLE BEGINWEDGE 12
IOO C3 C2 SINGLE NONE 13
IOO C2 N9 SINGLE BEGINDASH 14
IOO C8 N9 SINGLE NONE 15
IOO C8 N7 DOUBLE NONE 16
IOO N9 "C1'" SINGLE NONE 17
IOO C14 C13 DOUBLE NONE 18
IOO C14 C12 SINGLE NONE 19
IOO C13 C15 SINGLE NONE 20
IOO N7 C11 SINGLE NONE 21
IOO N7 C1 SINGLE NONE 22
IOO "C1'" N3 SINGLE NONE 23
IOO "C1'" C1 DOUBLE NONE 24
IOO C11 C12 SINGLE NONE 25
IOO C12 C16 DOUBLE NONE 26
IOO N3 "C2'" DOUBLE NONE 27
IOO C1 C6 SINGLE NONE 28
IOO C15 F1 SINGLE NONE 29
IOO C15 C17 DOUBLE NONE 30
IOO C16 C17 SINGLE NONE 31
IOO "C2'" N1 SINGLE NONE 32
IOO "C2'" N4 SINGLE NONE 33
IOO C17 F2 SINGLE NONE 34
IOO C6 N4 SINGLE NONE 35
IOO C6 OP1 DOUBLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IOO MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1[n+](Cc1ccccc1)cn2[C@H]1CCCO1' InChI=1S/C16H16N4O2/c21-16-14-15(17-10-18-16)20(13-7-4-8-22-13)11-19(14)9-12-5-2-1-3-6-12/h1-3,5-6,10-11,13H,4,7-9H2/p+1/t13-/m1/s1 GXQHIKOKQQAWOO-CYBMUJFWSA-O
IOO imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
IOO phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
IOO phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
IOO purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
IOO pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
IOO ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IOO "C2'" S1 1
IOO C1 S1 1
IOO "C1'" S1 1
IOO N4 S1 1
IOO C2 S1 1
IOO C3 S1 1
IOO "C3'" S1 1
IOO "C4'" S1 1
IOO C6 S1 1
IOO C8 S1 1
IOO C11 S1 1
IOO C12 S1 1
IOO C13 S1 1
IOO C14 S1 1
IOO C15 S1 1
IOO C16 S1 1
IOO C17 S1 1
IOO N3 S1 1
IOO N7 S1 1
IOO N9 S1 1
IOO "O4'" S1 1
IOO OP1 S1 1
IOO C1 F1 1
IOO "C1'" F1 1
IOO N9 F1 1
IOO C8 F1 1
IOO N7 F1 1
IOO C12 F2 1
IOO C14 F2 1
IOO C13 F2 1
IOO C15 F2 1
IOO C17 F2 1
IOO C16 F2 1
IOO "O5'" F3 1
IOO P F3 1
IOO O1 F3 1
IOO OP3 F3 1
IOO OP2 F3 1
IOO N7 F4 1
IOO C8 F4 1
IOO N9 F4 1
IOO "C1'" F4 1
IOO C1 F4 1
IOO C6 F4 1
IOO N4 F4 1
IOO "C2'" F4 1
IOO N3 F4 1
IOO C1 F5 1
IOO "C1'" F5 1
IOO N3 F5 1
IOO "C2'" F5 1
IOO N4 F5 1
IOO C6 F5 1
IOO C3 F6 1
IOO "C3'" F6 1
IOO "C4'" F6 1
IOO "O4'" F6 1
IOO C2 F6 1
IOO "C5'" F6 1
IOO "O5'" F6 1
IOO "O3'" F6 1
IOO "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IOO
_pdbe_chem_comp_rdkit_properties.exactmw 490.093
_pdbe_chem_comp_rdkit_properties.amw 490.336
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.353
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 209.643
_pdbe_chem_comp_rdkit_properties.tpsa 197.030
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.315
_pdbe_chem_comp_rdkit_properties.CrippenMR 101.153
_pdbe_chem_comp_rdkit_properties.chi0v 16.100
_pdbe_chem_comp_rdkit_properties.chi1v 9.503
_pdbe_chem_comp_rdkit_properties.chi2v 3.979
_pdbe_chem_comp_rdkit_properties.chi3v 3.979
_pdbe_chem_comp_rdkit_properties.chi4v 2.615
_pdbe_chem_comp_rdkit_properties.chi0n 34.205
_pdbe_chem_comp_rdkit_properties.chi1n 17.017
_pdbe_chem_comp_rdkit_properties.chi2n 3.664
_pdbe_chem_comp_rdkit_properties.chi3n 3.664
_pdbe_chem_comp_rdkit_properties.chi4n 2.421
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.780
_pdbe_chem_comp_rdkit_properties.kappa1 9.462
_pdbe_chem_comp_rdkit_properties.kappa2 8.533
_pdbe_chem_comp_rdkit_properties.kappa3 4.652
_pdbe_chem_comp_rdkit_properties.Phi 2.447
#
_pdbe_chem_comp_external_mappings.comp_id IOO
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 163183790
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IOO "C2'" -2.572 -3.698 1.320 ETKDGv3 1
IOO C1 -2.158 -1.325 -0.133 ETKDGv3 2
IOO "C1'" -1.246 -1.835 0.661 ETKDGv3 3
IOO N1 -2.750 -4.903 2.065 ETKDGv3 4
IOO N4 -3.639 -3.206 0.477 ETKDGv3 5
IOO C2 1.300 -1.552 0.917 ETKDGv3 6
IOO C3 1.867 -2.457 -0.187 ETKDGv3 7
IOO "C3'" 2.842 -1.544 -0.893 ETKDGv3 8
IOO "C4'" 3.235 -0.556 0.206 ETKDGv3 9
IOO "C5'" 3.599 0.817 -0.365 ETKDGv3 10
IOO C6 -3.445 -2.007 -0.288 ETKDGv3 11
IOO C8 -0.378 -0.106 -0.422 ETKDGv3 12
IOO C11 -2.263 0.687 -1.784 ETKDGv3 13
IOO C12 -2.826 1.874 -1.053 ETKDGv3 14
IOO C13 -4.732 2.907 0.086 ETKDGv3 15
IOO C14 -4.241 1.871 -0.606 ETKDGv3 16
IOO C15 -3.866 4.059 0.412 ETKDGv3 17
IOO C16 -2.040 2.921 -0.742 ETKDGv3 18
IOO C17 -2.586 4.065 0.018 ETKDGv3 19
IOO F1 -4.371 5.105 1.112 ETKDGv3 20
IOO F2 -1.784 5.117 0.317 ETKDGv3 21
IOO N3 -1.440 -3.050 1.399 ETKDGv3 22
IOO N7 -1.604 -0.216 -0.841 ETKDGv3 23
IOO N9 -0.041 -1.088 0.567 ETKDGv3 24
IOO "O2'" 2.491 -3.600 0.353 ETKDGv3 25
IOO "O3'" 3.937 -2.223 -1.464 ETKDGv3 26
IOO "O4'" 2.148 -0.434 1.098 ETKDGv3 27
IOO "O5'" 3.979 1.669 0.691 ETKDGv3 28
IOO OP1 -4.343 -1.581 -1.058 ETKDGv3 29
IOO O1 3.004 3.819 -0.485 ETKDGv3 30
IOO OP3 5.426 3.127 -1.200 ETKDGv3 31
IOO OP2 4.888 4.214 1.276 ETKDGv3 32
IOO P 4.286 3.219 0.048 ETKDGv3 33
IOO H21 -1.984 -5.268 2.673 ETKDGv3 34
IOO H22 -3.648 -5.431 2.008 ETKDGv3 35
IOO H1 -4.542 -3.728 0.411 ETKDGv3 36
IOO "H1'" 1.238 -2.107 1.880 ETKDGv3 37
IOO "H2'" 1.075 -2.794 -0.893 ETKDGv3 38
IOO "H3'" 2.295 -1.013 -1.705 ETKDGv3 39
IOO "H4'" 4.107 -0.942 0.781 ETKDGv3 40
IOO "H5'" 4.444 0.685 -1.078 ETKDGv3 41
IOO "H5''" 2.714 1.224 -0.906 ETKDGv3 42
IOO H8 0.311 0.647 -0.782 ETKDGv3 43
IOO H11 -1.534 1.024 -2.554 ETKDGv3 44
IOO H12 -3.066 0.153 -2.333 ETKDGv3 45
IOO H13 -5.765 2.903 0.409 ETKDGv3 46
IOO H14 -4.885 1.034 -0.840 ETKDGv3 47
IOO H15 -0.998 2.936 -1.040 ETKDGv3 48
IOO "HO2'" 3.137 -3.305 1.048 ETKDGv3 49
IOO "HO3'" 4.522 -2.556 -0.737 ETKDGv3 50
IOO HOP3 6.224 2.714 -0.783 ETKDGv3 51
IOO HOP2 5.682 3.735 1.622 ETKDGv3 52
#