Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : IOO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2' C C2 N N N 0 3.147 -3.622 -0.758
2 C1 C C5 N Y N 0 2.466 -1.352 0.56
3 C1' C C4 N Y N 0 1.512 -2.122 -0.115
4 N1 N N2 N N N 0 3.487 -4.771 -1.426
5 N4 N N1 N N N 0 4.121 -2.912 -0.123
6 C2 C C1' R N N 0 -0.984 -1.918 -0.46
7 C3 C C2' R N N 0 -1.66 -2.914 0.516
8 C3' C C3' S N N 0 -3.158 -2.747 0.164
9 C4' C C4' R N N 0 -3.233 -1.37 -0.525
10 C5' C C5' N N N 0 -4.195 -0.458 0.24
11 C6 C C6 N N N 0 3.815 -1.776 0.542
12 C8 C C8 N Y N 0 0.549 -0.376 0.823
13 C11 C CAY N N N 0 2.439 0.759 1.911
14 C12 C CAZ N Y N 0 2.983 1.827 0.997
15 C13 C CBA N Y N 0 4.778 2.713 -0.318
16 C14 C CBB N Y N 0 4.277 1.735 0.521
17 C15 C CBC N Y N 0 3.983 3.786 -0.682
18 C16 C CBD N Y N 0 2.184 2.894 0.631
19 C17 C CBE N Y N 0 2.683 3.875 -0.208
20 F1 F FBF N N N 0 4.473 4.745 -1.497
21 F2 F FBG N N N 0 1.905 4.922 -0.562
22 N3 N N3 N N N 0 1.89 -3.236 -0.753
23 N7 N N7 N Y N 1 1.815 -0.298 1.11
24 N9 N N9 N Y N 0 0.314 -1.484 0.062
25 O2' O O2' N N N 0 -1.223 -4.251 0.264
26 O3' O O3' N N N 0 -3.583 -3.777 -0.73
27 O4' O O4' N N N 0 -1.908 -0.809 -0.51
28 O5' O O5' N N N 0 -4.347 0.774 -0.469
29 OP1 O O6 N N N 0 4.68 -1.134 1.113
30 O1 O OAT N N N 0 -4.901 2.346 1.426
31 OP3 O OAU N N Y 0 -5.121 3.245 -0.923
32 OP2 O OAV N N N 0 -6.826 1.489 0.036
33 P P PAS N N N 0 -5.29 1.972 0.048
34 H21 H H1 N N N 0 4.411 -5.068 -1.442
35 H22 H H2 N N N 0 2.805 -5.288 -1.883
36 H1 H H3 N N N 0 5.04 -3.223 -0.149
37 H1' H H4 N N N 0 -0.869 -2.366 -1.447
38 H2' H H5 N N N 0 -1.469 -2.633 1.552
39 H3' H H6 N N N 0 -3.764 -2.753 1.071
40 H4' H H7 N N N 0 -3.571 -1.489 -1.554
41 H5' H H8 N N N 0 -5.164 -0.947 0.331
42 H5'' H H9 N N N 0 -3.793 -0.258 1.233
43 H8 H H10 N N N 0 -0.205 0.33 1.14
44 H11 H H11 N N N 0 3.253 0.336 2.5
45 H12 H H12 N N N 0 1.696 1.196 2.578
46 H13 H H13 N N N 0 5.791 2.642 -0.686
47 H14 H H14 N N N 0 4.898 0.898 0.804
48 H15 H H15 N N N 0 1.172 2.963 1.0
49 HO2' H H16 N N N 0 -1.618 -4.911 0.85
50 HO3' H H17 N N Y 0 -3.556 -4.665 -0.348
51 HOP3 H H18 N N Y 0 -5.661 4.007 -0.671
52 HOP2 H H19 N N N 0 -7.15 1.228 -0.837