Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HTL    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1' C2' N C doub 1.35 N Y
2 N1' C6' N C sing 1.35 N Y
3 C2' C2A C C sing 1.49 N N
4 C2' N3' C N sing 1.35 N Y
5 C2A H2A1 C H sing 1.1 N N
6 C2A H2A2 C H sing 1.1 N N
7 C2A H2A3 C H sing 1.1 N N
8 N3' C4' N C doub 1.35 N Y
9 C4' N4' C N sing 1.42 N N
10 C4' C5' C C sing 1.37 N Y
11 N4' H4'1 N H sing 1.0 N N
12 N4' H4'2 N H sing 1.0 N N
13 C5' C6' C C doub 1.37 N Y
14 C5' C35 C C sing 1.5 N N
15 C6' H6' C H sing 1.09 N N
16 C35 N3 C N sing 1.45 N N
17 C35 H351 C H sing 1.1 N N
18 C35 H352 C H sing 1.1 N N
19 N3 C2 N C doub 1.31 N Y
20 N3 C4 N C sing 1.38 N Y
21 C2 S1 C S sing 1.71 N Y
22 C2 C1' C C sing 1.42 N N
23 S1 C5 S C sing 1.71 N Y
24 C5 C4 C C doub 1.36 N Y
25 C5 C5A C C sing 1.5 N N
26 C4 C4A C C sing 1.47 N N
27 C4A H4A1 C H sing 1.1 N N
28 C4A H4A2 C H sing 1.11 N N
29 C4A H4A3 C H sing 1.11 N N
30 C5A C5B C C sing 1.53 N N
31 C5A H5A1 C H sing 1.1 N N
32 C5A H5A2 C H sing 1.1 N N
33 C5B O5G C O sing 1.42 N N
34 C5B H5B1 C H sing 1.09 N N
35 C5B H5B2 C H sing 1.09 N N
36 O5G P1 O P sing 1.62 N N
37 P1 O11 P O sing 1.62 N N
38 P1 O12 P O doub 1.5 N N
39 P1 O13 P O sing 1.62 N N
40 O11 P2 O P sing 1.62 N N
41 P2 O21 P O doub 1.5 N N
42 P2 O22 P O sing 1.62 N N
43 P2 O23 P O sing 1.62 N N
44 O22 H22O O H sing 0.98 N N
45 O23 H23O O H sing 0.98 N N
46 C1' O2' C O doub 1.25 N N
47 C1' C3' C C sing 1.52 N N
48 C3' H3'1 C H sing 1.1 N N
49 C3' H3'2 C H sing 1.1 N N
50 C3' H3'3 C H sing 1.1 N N
51 HO1 O13 H O sing 0.98 N N