Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HTL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1' N N1* N Y N 0 4.45 5.604 1.056
2 C2' C C2* N Y N 0 4.976 6.807 0.757
3 C2A C C2A N N N 0 6.115 7.264 1.604
4 N3' N N3* N Y N 0 4.583 7.641 -0.224
5 C4' C C4* N Y N 0 3.551 7.196 -0.97
6 N4' N N4* N N N 0 3.084 8.023 -2.021
7 C5' C C5* N Y N 0 2.938 5.99 -0.757
8 C6' C C6* N Y N 0 3.421 5.222 0.271
9 C35 C C35 N N N 0 1.787 5.498 -1.59
10 N3 N N3 N Y N 1 1.364 4.198 -1.117
11 C2 C C2 N Y N 0 0.444 4.059 -0.188
12 S1 S S1 N Y N 0 0.159 2.409 0.16
13 C5 C C5 N Y N 0 1.327 1.942 -0.996
14 C4 C C4 N Y N 0 1.889 3.02 -1.601
15 C4A C C4A N N N 0 2.924 3.091 -2.643
16 C5A C C5A N N N 0 1.601 0.481 -1.216
17 C5B C C5B N N N 0 0.713 -0.131 -2.295
18 O5G O O5G N N N 0 0.955 0.511 -3.536
19 P1 P P1 R N N 0 0.14 0.051 -4.856
20 O11 O O11 N N N 0 -1.416 0.155 -4.431
21 O12 O O12 N N N 0 0.488 0.809 -6.105
22 O13 O O13 N N N 0 0.393 -1.544 -4.952
23 P2 P P2 N N N 0 -2.33 1.434 -4.056
24 O21 O O21 N N N 0 -1.846 2.224 -2.875
25 O22 O O22 N N N 0 -3.807 0.797 -3.9
26 O23 O O23 N N N 0 -2.415 2.253 -5.447
27 C1' C C1' N N N 0 -0.268 5.09 0.489
28 O2' O O2' N N N 0 0.156 6.241 0.734
29 C3' C C3' N N N 0 -1.676 4.802 0.971
30 H2A1 H 1H2A N N N 0 7.009 7.425 0.989
31 H2A2 H 2H2A N N N 0 5.876 8.203 2.121
32 H2A3 H 3H2A N N N 0 6.356 6.526 2.381
33 H4'1 H 1H4* N N N 0 2.454 7.64 -2.692
34 H4'2 H 2H4* N N N 0 3.467 8.939 -2.12
35 H6' H H6* N N N 0 3.0 4.251 0.514
36 H351 H 1H35 N N N 0 0.943 6.196 -1.542
37 H352 H 2H35 N N N 0 2.071 5.427 -2.647
38 H4A1 H 1H4A N N N 0 3.822 2.514 -2.358
39 H4A2 H 2H4A N N N 0 2.57 2.695 -3.612
40 H4A3 H 3H4A N N N 0 3.247 4.129 -2.843
41 H5A1 H 1H5A N N N 0 2.656 0.342 -1.485
42 H5A2 H 2H5A N N N 0 1.443 -0.059 -0.274
43 H5B1 H 1H5B N N N 0 0.954 -1.192 -2.415
44 H5B2 H 2H5B N N N 0 -0.35 -0.037 -2.05
45 H22O H OH22 N N N 0 -4.539 1.368 -3.585
46 H23O H OH23 N N N 0 -2.862 3.126 -5.458
47 H3'1 H 1H3' N N N 0 -1.739 3.915 1.62
48 H3'2 H 2H3' N N N 0 -2.39 4.659 0.145
49 H3'3 H 3H3' N N N 0 -2.121 5.609 1.58
50 HO1 H HO1 N N N 0 1.237 -1.868 -5.332