data_HTL
#
_chem_comp.id HTL
_chem_comp.name "2-ACETYL-THIAMINE DIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H21 N4 O8 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;2-ACETYL-3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-4-METHYL-5-(4,6,6-TRIHYDROXY-3,5-DIOXA-4,6-DIPHOSPHAHEX-1-YL)THIAZO
LIUM INNER SALT P,P'-DIOXIDE
;
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2001-11-26
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 467.351
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HTL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1KEK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HTL "N1'" N1* N 0 1 Y N N N N N -27.307 -64.040 24.764 4.450 5.604 1.056 "N1'" HTL 1
HTL "C2'" C2* C 0 1 Y N N N N N -25.993 -64.198 25.403 4.976 6.807 0.757 "C2'" HTL 2
HTL C2A C2A C 0 1 N N N N N N -25.424 -63.174 26.151 6.115 7.264 1.604 C2A HTL 3
HTL "N3'" N3* N 0 1 Y N N N N N -25.260 -65.408 25.276 4.583 7.641 -0.224 "N3'" HTL 4
HTL "C4'" C4* C 0 1 Y N N N N N -25.802 -66.527 24.499 3.551 7.196 -0.970 "C4'" HTL 5
HTL "N4'" N4* N 0 1 N N N N N N -24.969 -67.714 24.436 3.084 8.023 -2.021 "N4'" HTL 6
HTL "C5'" C5* C 0 1 Y N N N N N -27.195 -66.399 23.802 2.938 5.990 -0.757 "C5'" HTL 7
HTL "C6'" C6* C 0 1 Y N N N N N -27.858 -65.169 23.977 3.421 5.222 0.271 "C6'" HTL 8
HTL C35 C35 C 0 1 N N N N N N -27.799 -67.521 22.988 1.787 5.498 -1.590 C35 HTL 9
HTL N3 N3 N 1 1 Y N N N N N -27.013 -67.782 21.798 1.364 4.198 -1.117 N3 HTL 10
HTL C2 C2 C 0 1 Y N N N N N -26.231 -69.056 21.568 0.444 4.059 -0.188 C2 HTL 11
HTL S1 S1 S 0 1 Y N N N N N -26.614 -69.552 20.078 0.159 2.409 0.160 S1 HTL 12
HTL C5 C5 C 0 1 Y N N N N N -26.793 -67.856 19.597 1.327 1.942 -0.996 C5 HTL 13
HTL C4 C4 C 0 1 Y N N N N N -27.453 -67.264 20.583 1.889 3.020 -1.601 C4 HTL 14
HTL C4A C4A C 0 1 N N N N N N -28.486 -66.335 20.269 2.924 3.091 -2.643 C4A HTL 15
HTL C5A C5A C 0 1 N N N N N N -27.595 -67.951 18.307 1.601 0.481 -1.216 C5A HTL 16
HTL C5B C5B C 0 1 N N N N N N -26.542 -67.438 17.346 0.713 -0.131 -2.295 C5B HTL 17
HTL O5G O5G O 0 1 N N N N N N -26.802 -66.753 16.028 0.955 0.511 -3.536 O5G HTL 18
HTL P1 P1 P 0 1 N N R N N N -25.866 -66.395 14.838 0.140 0.051 -4.856 P1 HTL 19
HTL O11 O11 O 0 1 N N N N N N -25.277 -67.823 14.566 -1.416 0.155 -4.431 O11 HTL 20
HTL O12 O12 O 0 1 N N N N N N -26.572 -65.883 13.643 0.488 0.809 -6.105 O12 HTL 21
HTL O13 O13 O 0 1 N N N N N N -24.815 -65.583 15.432 0.393 -1.544 -4.952 O13 HTL 22
HTL P2 P2 P 0 1 N N N N N N -25.867 -69.177 13.790 -2.330 1.434 -4.056 P2 HTL 23
HTL O21 O21 O 0 1 N N N N N N -24.777 -69.648 12.836 -1.846 2.224 -2.875 O21 HTL 24
HTL O22 O22 O 0 1 N N N N N N -26.391 -70.031 14.843 -3.807 0.797 -3.900 O22 HTL 25
HTL O23 O23 O 0 1 N N N N N N -27.002 -68.568 12.936 -2.415 2.253 -5.447 O23 HTL 26
HTL "C1'" "C1'" C 0 1 N N N N N N -26.029 -70.529 22.865 -0.268 5.090 0.489 "C1'" HTL 27
HTL "O2'" "O2'" O 0 1 N N N N N N -26.080 -70.358 24.089 0.156 6.241 0.734 "O2'" HTL 28
HTL "C3'" "C3'" C 0 1 N N N N N N -25.571 -71.942 22.345 -1.676 4.802 0.971 "C3'" HTL 29
HTL H2A1 1H2A H 0 0 N N N N N N -24.427 -63.293 26.635 7.009 7.425 0.989 H2A1 HTL 30
HTL H2A2 2H2A H 0 0 N N N N N N -25.388 -62.260 25.512 5.876 8.203 2.121 H2A2 HTL 31
HTL H2A3 3H2A H 0 0 N N N N N N -26.155 -62.875 26.938 6.356 6.526 2.381 H2A3 HTL 32
HTL "H4'1" 1H4* H 0 0 N N N N N N -25.346 -68.492 23.895 2.454 7.640 -2.692 "H4'1" HTL 33
HTL "H4'2" 2H4* H 0 0 N N N N N N -24.736 -68.026 25.379 3.467 8.939 -2.120 "H4'2" HTL 34
HTL "H6'" H6* H 0 1 N N N N N N -28.840 -65.087 23.481 3.000 4.251 0.514 "H6'" HTL 35
HTL H351 1H35 H 0 0 N N N N N N -27.938 -68.443 23.599 0.943 6.196 -1.542 H351 HTL 36
HTL H352 2H35 H 0 0 N N N N N N -28.867 -67.319 22.739 2.071 5.427 -2.647 H352 HTL 37
HTL H4A1 1H4A H 0 0 N N N N N N -28.838 -65.920 19.295 3.822 2.514 -2.358 H4A1 HTL 38
HTL H4A2 2H4A H 0 0 N N N N N N -29.401 -66.765 20.737 2.570 2.695 -3.612 H4A2 HTL 39
HTL H4A3 3H4A H 0 0 N N N N N N -28.252 -65.437 20.887 3.247 4.129 -2.843 H4A3 HTL 40
HTL H5A1 1H5A H 0 0 N N N N N N -28.038 -68.946 18.071 2.656 0.342 -1.485 H5A1 HTL 41
HTL H5A2 2H5A H 0 0 N N N N N N -28.577 -67.423 18.294 1.443 -0.059 -0.274 H5A2 HTL 42
HTL H5B1 1H5B H 0 0 N N N N N N -25.887 -66.752 17.933 0.954 -1.192 -2.415 H5B1 HTL 43
HTL H5B2 2H5B H 0 0 N N N N N N -25.871 -68.300 17.125 -0.350 -0.037 -2.050 H5B2 HTL 44
HTL H22O OH22 H 0 0 N N N N N N -26.726 -70.802 14.401 -4.539 1.368 -3.585 H22O HTL 45
HTL H23O OH23 H 0 0 N N N N N N -27.337 -69.339 12.494 -2.862 3.126 -5.458 H23O HTL 46
HTL "H3'1" "1H3'" H 0 0 N N N N N N -25.456 -72.774 23.078 -1.739 3.915 1.620 "H3'1" HTL 47
HTL "H3'2" "2H3'" H 0 0 N N N N N N -26.263 -72.268 21.534 -2.390 4.659 0.145 "H3'2" HTL 48
HTL "H3'3" "3H3'" H 0 0 N N N N N N -24.616 -71.825 21.781 -2.121 5.609 1.580 "H3'3" HTL 49
HTL HO1 HO1 H 0 1 N N N N N N -24.145 -65.406 14.782 1.237 -1.868 -5.332 HO1 HTL 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HTL "N1'" "C2'" DOUB Y N 1
HTL "N1'" "C6'" SING Y N 2
HTL "C2'" C2A SING N N 3
HTL "C2'" "N3'" SING Y N 4
HTL C2A H2A1 SING N N 5
HTL C2A H2A2 SING N N 6
HTL C2A H2A3 SING N N 7
HTL "N3'" "C4'" DOUB Y N 8
HTL "C4'" "N4'" SING N N 9
HTL "C4'" "C5'" SING Y N 10
HTL "N4'" "H4'1" SING N N 11
HTL "N4'" "H4'2" SING N N 12
HTL "C5'" "C6'" DOUB Y N 13
HTL "C5'" C35 SING N N 14
HTL "C6'" "H6'" SING N N 15
HTL C35 N3 SING N N 16
HTL C35 H351 SING N N 17
HTL C35 H352 SING N N 18
HTL N3 C2 DOUB Y N 19
HTL N3 C4 SING Y N 20
HTL C2 S1 SING Y N 21
HTL C2 "C1'" SING N N 22
HTL S1 C5 SING Y N 23
HTL C5 C4 DOUB Y N 24
HTL C5 C5A SING N N 25
HTL C4 C4A SING N N 26
HTL C4A H4A1 SING N N 27
HTL C4A H4A2 SING N N 28
HTL C4A H4A3 SING N N 29
HTL C5A C5B SING N N 30
HTL C5A H5A1 SING N N 31
HTL C5A H5A2 SING N N 32
HTL C5B O5G SING N N 33
HTL C5B H5B1 SING N N 34
HTL C5B H5B2 SING N N 35
HTL O5G P1 SING N N 36
HTL P1 O11 SING N N 37
HTL P1 O12 DOUB N N 38
HTL P1 O13 SING N N 39
HTL O11 P2 SING N N 40
HTL P2 O21 DOUB N N 41
HTL P2 O22 SING N N 42
HTL P2 O23 SING N N 43
HTL O22 H22O SING N N 44
HTL O23 H23O SING N N 45
HTL "C1'" "O2'" DOUB N N 46
HTL "C1'" "C3'" SING N N 47
HTL "C3'" "H3'1" SING N N 48
HTL "C3'" "H3'2" SING N N 49
HTL "C3'" "H3'3" SING N N 50
HTL HO1 O13 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HTL SMILES ACDLabs 10.04 O=C(c1sc(c([n+]1Cc2cnc(nc2N)C)C)CCOP(=O)(O)OP(=O)(O)O)C
HTL SMILES_CANONICAL CACTVS 3.341 CC(=O)c1sc(CCO[P@](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N
HTL SMILES CACTVS 3.341 CC(=O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N
HTL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(=O)C)CCO[P@@](=O)(O)OP(=O)(O)O
HTL SMILES "OpenEye OEToolkits" 1.5.0 Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(=O)C)CCOP(=O)(O)OP(=O)(O)O
HTL InChI InChI 1.03 InChI=1S/C14H20N4O8P2S/c1-8-12(4-5-25-28(23,24)26-27(20,21)22)29-14(9(2)19)18(8)7-11-6-16-10(3)17-13(11)15/h6H,4-5,7H2,1-3H3,(H4-,15,16,17,20,21,22,23,24)/p+1
HTL InChIKey InChI 1.03 GYRGKLZCJRVYRV-UHFFFAOYSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HTL "SYSTEMATIC NAME" ACDLabs 10.04 2-acetyl-3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium
HTL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-2-ethanoyl-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HTL 'Create component' 2001-11-26 RCSB
HTL 'Modify descriptor' 2011-06-04 RCSB
HTL 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HTL
_pdbx_chem_comp_synonyms.name
"2-ACETYL-3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-4-METHYL-5-(4,6,6-TRIHYDROXY-3,5-DIOXA-4,6-DIPHOSPHAHEX-1-YL)THIAZOLIUM INNER SALT P,P'-DIOXIDE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id HTL
_pdbe_chem_comp_drugbank_details.drugbank_id DB02410
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
"2-Acetyl-3-[(4-Amino-2-Methyl-5-Pyrimidinyl)Methyl]-4-Methyl-5-(4,6,6-Trihydroxy-3,5-Dioxa-4,6-Diphosphahex-1-Yl)Thiazolium Inner Salt P,P'-Dioxide"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
HTL "2-ACETYL-3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-4-METHYL-5-(4,6,6-TRIHYDROXY-3,5-DIOXA-4,6-DIPHOSPHAHEX-1-YL)THIAZOLIUM INNER SALT P,P'-DIOXIDE" wwPDB ?
HTL "2-Acetyl-3-[(4-Amino-2-Methyl-5-Pyrimidinyl)Methyl]-4-Methyl-5-(4,6,6-Trihydroxy-3,5-Dioxa-4,6-Diphosphahex-1-Yl)Thiazolium Inner Salt P,P'-Dioxide" DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id HTL
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02410
_pdbe_chem_comp_drugbank_classification.parent 'Thiamine phosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Diazines
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as thiamine phosphates. These are thiamine derivatives in which the hydroxyl group of the ethanol moiety is substituted by a phosphate group.'
#
_pdbe_chem_comp_drugbank_targets.comp_id HTL
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02410
_pdbe_chem_comp_drugbank_targets.name 'Pyruvate:ferredoxin oxidoreductase'
_pdbe_chem_comp_drugbank_targets.organism 'Desulfovibrio africanus'
_pdbe_chem_comp_drugbank_targets.uniprot_id P94692
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HTL "N1'" N 7.702 -3.982 1
HTL "C2'" C 6.404 -4.732 2
HTL C2A C 6.404 -6.232 3
HTL "N3'" N 5.104 -3.982 4
HTL "C4'" C 5.104 -2.482 5
HTL "N4'" N 3.805 -1.732 6
HTL "C5'" C 6.404 -1.732 7
HTL "C6'" C 7.702 -2.482 8
HTL C35 C 6.404 -0.232 9
HTL N3 N 7.702 0.518 10
HTL C2 C 7.859 2.010 11
HTL S1 S 9.326 2.322 12
HTL C5 C 10.076 1.023 13
HTL C4 C 9.073 -0.092 14
HTL C4A C 9.385 -1.559 15
HTL C5A C 11.568 0.866 16
HTL C5B C 12.450 2.080 17
HTL O5G O 13.942 1.923 18
HTL P1 P 14.823 3.136 19
HTL O11 O 15.705 4.350 20
HTL O12 O 16.037 2.255 21
HTL O13 O 13.610 4.018 22
HTL P2 P 17.197 4.193 23
HTL O21 O 18.689 4.036 24
HTL O22 O 17.354 5.685 25
HTL O23 O 17.040 2.701 26
HTL "C1'" C 6.745 3.014 27
HTL "O2'" O 5.318 2.550 28
HTL "C3'" C 7.056 4.481 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HTL "N1'" "C2'" DOUBLE NONE 1
HTL "N1'" "C6'" SINGLE NONE 2
HTL "C2'" C2A SINGLE NONE 3
HTL "C2'" "N3'" SINGLE NONE 4
HTL "N3'" "C4'" DOUBLE NONE 5
HTL "C4'" "N4'" SINGLE NONE 6
HTL "C4'" "C5'" SINGLE NONE 7
HTL "C5'" "C6'" DOUBLE NONE 8
HTL "C5'" C35 SINGLE NONE 9
HTL C35 N3 SINGLE NONE 10
HTL N3 C2 DOUBLE NONE 11
HTL N3 C4 SINGLE NONE 12
HTL C2 S1 SINGLE NONE 13
HTL C2 "C1'" SINGLE NONE 14
HTL S1 C5 SINGLE NONE 15
HTL C5 C4 DOUBLE NONE 16
HTL C5 C5A SINGLE NONE 17
HTL C4 C4A SINGLE NONE 18
HTL C5A C5B SINGLE NONE 19
HTL C5B O5G SINGLE NONE 20
HTL O5G P1 SINGLE NONE 21
HTL P1 O11 SINGLE NONE 22
HTL P1 O12 DOUBLE NONE 23
HTL P1 O13 SINGLE BEGINDASH 24
HTL O11 P2 SINGLE NONE 25
HTL P2 O21 DOUBLE NONE 26
HTL P2 O22 SINGLE NONE 27
HTL P2 O23 SINGLE NONE 28
HTL "C1'" "O2'" DOUBLE NONE 29
HTL "C1'" "C3'" SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HTL MurckoScaffold S1 scaffold 'c1ncc(C[n+]2ccsc2)cn1' InChI=1S/C8H8N3S/c1-2-12-7-11(1)5-8-3-9-6-10-4-8/h1-4,6-7H,5H2/q+1 VOZNMBMJVMRVOB-UHFFFAOYSA-N
HTL phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
HTL pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
HTL thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HTL "N1'" S1 1
HTL "C2'" S1 1
HTL "N3'" S1 1
HTL "C4'" S1 1
HTL "C5'" S1 1
HTL "C6'" S1 1
HTL C35 S1 1
HTL N3 S1 1
HTL C2 S1 1
HTL S1 S1 1
HTL C5 S1 1
HTL C4 S1 1
HTL O5G F1 1
HTL P1 F1 1
HTL O12 F1 1
HTL O11 F1 1
HTL O13 F1 1
HTL O11 F1 2
HTL P2 F1 2
HTL O21 F1 2
HTL O22 F1 2
HTL O23 F1 2
HTL "C5'" F2 1
HTL "C4'" F2 1
HTL "N3'" F2 1
HTL "C2'" F2 1
HTL "N1'" F2 1
HTL "C6'" F2 1
HTL C5 F3 1
HTL C4 F3 1
HTL N3 F3 1
HTL C2 F3 1
HTL S1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HTL
_pdbe_chem_comp_rdkit_properties.exactmw 467.055
_pdbe_chem_comp_rdkit_properties.amw 467.357
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 199.643
_pdbe_chem_comp_rdkit_properties.tpsa 186.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.390
_pdbe_chem_comp_rdkit_properties.CrippenMR 99.995
_pdbe_chem_comp_rdkit_properties.chi0v 15.963
_pdbe_chem_comp_rdkit_properties.chi1v 10.304
_pdbe_chem_comp_rdkit_properties.chi2v 5.465
_pdbe_chem_comp_rdkit_properties.chi3v 5.465
_pdbe_chem_comp_rdkit_properties.chi4v 3.590
_pdbe_chem_comp_rdkit_properties.chi0n 34.358
_pdbe_chem_comp_rdkit_properties.chi1n 16.685
_pdbe_chem_comp_rdkit_properties.chi2n 2.489
_pdbe_chem_comp_rdkit_properties.chi3n 2.489
_pdbe_chem_comp_rdkit_properties.chi4n 1.524
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.560
_pdbe_chem_comp_rdkit_properties.kappa1 7.848
_pdbe_chem_comp_rdkit_properties.kappa2 9.068
_pdbe_chem_comp_rdkit_properties.kappa3 6.731
_pdbe_chem_comp_rdkit_properties.Phi 2.454
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HTL UniChem DrugBank DB02410
HTL UniChem ZINC ZINC000013546639
HTL UniChem PubChem 4369479
HTL UniChem 'Probes And Drugs' PD008356
HTL UniChem Nikkaji J811.781K
HTL UniChem Nikkaji J1.694.082H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HTL "N1'" -1.953 2.681 1.761 ETKDGv3 1
HTL "C2'" -1.498 1.818 2.620 ETKDGv3 2
HTL C2A -1.130 2.261 3.996 ETKDGv3 3
HTL "N3'" -1.414 0.430 2.264 ETKDGv3 4
HTL "C4'" -1.764 0.008 1.083 ETKDGv3 5
HTL "N4'" -1.708 -1.394 0.809 ETKDGv3 6
HTL "C5'" -2.247 0.989 0.066 ETKDGv3 7
HTL "C6'" -2.348 2.276 0.443 ETKDGv3 8
HTL C35 -2.642 0.578 -1.338 ETKDGv3 9
HTL N3 -1.542 -0.113 -2.047 ETKDGv3 10
HTL C2 -1.657 -1.286 -2.619 ETKDGv3 11
HTL S1 -0.090 -1.924 -3.160 ETKDGv3 12
HTL C5 0.718 -0.433 -2.648 ETKDGv3 13
HTL C4 -0.188 0.417 -2.134 ETKDGv3 14
HTL C4A 0.169 1.806 -1.671 ETKDGv3 15
HTL C5A 2.210 -0.248 -2.724 ETKDGv3 16
HTL C5B 2.852 -0.277 -1.335 ETKDGv3 17
HTL O5G 2.415 -1.421 -0.635 ETKDGv3 18
HTL P1 2.862 -1.265 1.002 ETKDGv3 19
HTL O11 2.176 0.161 1.640 ETKDGv3 20
HTL O12 2.351 -2.479 1.746 ETKDGv3 21
HTL O13 4.552 -1.212 1.117 ETKDGv3 22
HTL P2 2.390 0.138 3.329 ETKDGv3 23
HTL O21 1.405 -0.824 3.954 ETKDGv3 24
HTL O22 2.092 1.690 3.934 ETKDGv3 25
HTL O23 3.966 -0.315 3.753 ETKDGv3 26
HTL "C1'" -2.917 -2.033 -2.831 ETKDGv3 27
HTL "O2'" -3.974 -1.422 -3.141 ETKDGv3 28
HTL "C3'" -2.920 -3.528 -2.807 ETKDGv3 29
HTL H2A1 -0.424 3.116 3.941 ETKDGv3 30
HTL H2A2 -0.647 1.430 4.553 ETKDGv3 31
HTL H2A3 -2.044 2.575 4.542 ETKDGv3 32
HTL "H4'1" -1.281 -2.045 1.505 ETKDGv3 33
HTL "H4'2" -2.174 -1.809 -0.024 ETKDGv3 34
HTL "H6'" -2.709 3.029 -0.245 ETKDGv3 35
HTL H351 -3.533 -0.068 -1.222 ETKDGv3 36
HTL H352 -2.958 1.454 -1.946 ETKDGv3 37
HTL H4A1 -0.674 2.500 -1.862 ETKDGv3 38
HTL H4A2 1.041 2.210 -2.223 ETKDGv3 39
HTL H4A3 0.402 1.792 -0.586 ETKDGv3 40
HTL H5A1 2.457 0.704 -3.239 ETKDGv3 41
HTL H5A2 2.643 -1.071 -3.334 ETKDGv3 42
HTL H5B1 2.580 0.666 -0.811 ETKDGv3 43
HTL H5B2 3.956 -0.308 -1.460 ETKDGv3 44
HTL H22O 2.639 2.291 3.368 ETKDGv3 45
HTL H23O 4.532 0.447 3.472 ETKDGv3 46
HTL "H3'1" -3.947 -3.907 -2.618 ETKDGv3 47
HTL "H3'2" -2.564 -3.916 -3.784 ETKDGv3 48
HTL "H3'3" -2.254 -3.898 -1.999 ETKDGv3 49
HTL HO1 4.792 -0.273 0.916 ETKDGv3 50
#