Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GTG    

Bonds between two atoms of the molecule

Total Number of Bonds: 87


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PA O1A P O doub 1.48 N N
2 PA O2A P O sing 1.61 N N
3 PA O3A P O sing 1.61 N N
4 PA O5D P O sing 1.61 N N
5 O2A HOA2 O H sing 0.97 N N
6 O3A PB O P sing 1.61 N N
7 PB O1B P O doub 1.48 N N
8 PB O2B P O sing 1.61 N N
9 PB O3B P O sing 1.61 N N
10 O2B HOB2 O H sing 0.97 N N
11 O3B PG O P sing 1.61 N N
12 N9A C8A N C sing 1.37 N Y
13 N9A C4A N C sing 1.37 N Y
14 N9A C1D N C sing 1.47 N N
15 C8A N7A C N doub 1.3 N Y
16 C8A H8 C H sing 1.08 N N
17 N7A C7X N C sing 1.47 N N
18 N7A C5A N C sing 1.36 N Y
19 C7X HC71 C H sing 1.09 N N
20 C7X HC72 C H sing 1.09 N N
21 C7X HC73 C H sing 1.09 N N
22 C5A C6A C C sing 1.41 N N
23 C5A C4A C C doub 1.4 N Y
24 C6A O6A C O doub 1.22 N N
25 C6A N1A C N sing 1.35 N N
26 N1A C2A N C sing 1.36 N N
27 N1A HN1 N H sing 0.97 N N
28 C2A N2A C N sing 1.37 N N
29 C2A N3A C N doub 1.31 N N
30 N2A HN21 N H sing 0.97 N N
31 N2A HN22 N H sing 0.97 N N
32 N3A C4A N C sing 1.34 N N
33 O5D C5D O C sing 1.43 N N
34 C5D C4D C C sing 1.53 N N
35 C5D H5'1 C H sing 1.09 N N
36 C5D H5'2 C H sing 1.09 N N
37 C4D O4D C O sing 1.44 N N
38 C4D C3D C C sing 1.54 N N
39 C4D H4' C H sing 1.09 N N
40 O4D C1D O C sing 1.44 N N
41 C3D O3D C O sing 1.43 N N
42 C3D C2D C C sing 1.55 N N
43 C3D H3' C H sing 1.09 N N
44 O3D HO3' O H sing 0.97 N N
45 C2D O2D C O sing 1.43 N N
46 C2D C1D C C sing 1.55 N N
47 C2D H2' C H sing 1.09 N N
48 O2D HO2' O H sing 0.97 N N
49 C1D H1' C H sing 1.09 N N
50 PG O1G P O doub 1.48 N N
51 PG O2G P O sing 1.61 N N
52 PG O5E P O sing 1.61 N N
53 O2G HOG2 O H sing 0.97 N N
54 O5E C5E O C sing 1.43 N N
55 C5E C4E C C sing 1.53 N N
56 C5E H5B1 C H sing 1.09 N N
57 C5E H5B2 C H sing 1.09 N N
58 C4E O4E C O sing 1.44 N N
59 C4E C3E C C sing 1.54 N N
60 C4E H4B C H sing 1.09 N N
61 O4E C1E O C sing 1.44 N N
62 C3E O3E C O sing 1.43 N N
63 C3E C2E C C sing 1.55 N N
64 C3E H3B C H sing 1.09 N N
65 O3E H3BO O H sing 0.97 N N
66 C2E O2E C O sing 1.43 N N
67 C2E C1E C C sing 1.55 N N
68 C2E H2B C H sing 1.09 N N
69 O2E H2BO O H sing 0.97 N N
70 C1E N9B C N sing 1.47 N N
71 C1E H1B C H sing 1.09 N N
72 N9B C8B N C sing 1.36 N Y
73 N9B C4B N C sing 1.37 N Y
74 C8B N7B C N doub 1.3 N Y
75 C8B H8B C H sing 1.08 N N
76 N7B C5B N C sing 1.36 N Y
77 C5B C6B C C sing 1.42 N N
78 C5B C4B C C doub 1.4 N Y
79 C6B O6B C O doub 1.22 N N
80 C6B N1B C N sing 1.35 N N
81 N1B C2B N C sing 1.36 N N
82 N1B H1BN N H sing 0.97 N N
83 C2B N2B C N sing 1.37 N N
84 C2B N3B C N doub 1.31 N N
85 N2B H2B1 N H sing 0.97 N N
86 N2B H2B2 N H sing 0.97 N N
87 N3B C4B N C sing 1.34 N N