data_GTG
#
_chem_comp.id GTG
_chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H30 N10 O18 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "MRNA CAP ANALOG N7-METHYL GPPPG"
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2002-11-04
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 803.440
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GTG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MWH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GTG PA PA P 0 1 N N R N N N -34.122 83.560 41.203 -2.772 -3.743 0.335 PA GTG 1
GTG O1A O1A O 0 1 N N N N N N -35.309 84.412 40.767 -3.035 -4.959 1.136 O1A GTG 2
GTG O2A O2A O 0 1 N N N N N N -34.368 82.022 41.157 -3.249 -3.986 -1.183 O2A GTG 3
GTG O3A O3A O 0 1 N N N N N N -33.424 83.454 42.477 -1.196 -3.416 0.356 O3A GTG 4
GTG PB PB P 0 1 N N N N N N -34.120 84.215 43.706 0.133 -4.307 0.177 PB GTG 5
GTG O1B O1B O 0 1 N N N N N N -32.677 84.880 44.102 -0.037 -5.221 -0.974 O1B GTG 6
GTG O2B O2B O 0 1 N N N N N N -33.873 83.360 44.871 0.386 -5.169 1.514 O2B GTG 7
GTG O3B O3B O 0 1 N N N N N N -34.857 85.675 43.448 1.395 -3.342 -0.085 O3B GTG 8
GTG N9A N9A N 0 1 Y N N N N N -29.946 81.560 42.976 -6.536 1.624 -0.170 N9A GTG 9
GTG C8A C8A C 0 1 Y N N N N N -31.269 81.258 43.180 -6.194 1.282 -1.447 C8A GTG 10
GTG N7A N7A N 1 1 Y N N N N N -31.467 80.242 43.952 -6.527 2.238 -2.263 N7A GTG 11
GTG C7X C7MA C 0 1 N N N N N N -32.769 79.733 44.314 -6.316 2.226 -3.713 C7X GTG 12
GTG C5A C5A C 0 1 Y N N N N N -30.188 79.828 44.294 -7.101 3.247 -1.564 C5A GTG 13
GTG C6A C6A C 0 1 N N N N N N -29.763 78.756 45.122 -7.642 4.506 -1.914 C6A GTG 14
GTG O6A O6A O 0 1 N N N N N N -30.452 77.949 45.724 -7.653 4.880 -3.075 O6A GTG 15
GTG N1A N1A N 0 1 N N N N N N -28.384 78.670 45.215 -8.148 5.283 -0.931 N1A GTG 16
GTG C2A C2A C 0 1 N N N N N N -27.480 79.511 44.589 -8.130 4.855 0.363 C2A GTG 17
GTG N2A N2A N 0 1 N N N N N N -26.181 79.284 44.788 -8.651 5.666 1.340 N2A GTG 18
GTG N3A N3A N 0 1 N N N N N N -27.883 80.529 43.804 -7.630 3.688 0.701 N3A GTG 19
GTG C4A C4A C 0 1 Y N N N N N -29.242 80.628 43.702 -7.112 2.864 -0.217 C4A GTG 20
GTG O5D O5*A O 0 1 N N N N N N -32.859 83.642 40.634 -3.586 -2.502 0.961 O5D GTG 21
GTG C5D C5*A C 0 1 N N N N N N -31.825 84.016 39.787 -4.998 -2.527 1.177 C5D GTG 22
GTG C4D C4*A C 0 1 N N R N N N -30.699 83.996 40.670 -5.445 -1.195 1.781 C4D GTG 23
GTG O4D O4*A O 0 1 N N N N N N -30.516 83.700 42.035 -5.260 -0.138 0.824 O4D GTG 24
GTG C3D C3*A C 0 1 N N S N N N -29.833 83.301 39.771 -6.948 -1.250 2.118 C3D GTG 25
GTG O3D O3*A O 0 1 N N N N N N -29.081 83.781 38.769 -7.155 -1.038 3.515 O3D GTG 26
GTG C2D C2*A C 0 1 N N R N N N -29.032 82.506 40.565 -7.564 -0.091 1.296 C2D GTG 27
GTG O2D O2*A O 0 1 N N N N N N -27.697 82.823 40.296 -8.550 0.607 2.060 O2D GTG 28
GTG C1D C1*A C 0 1 N N R N N N -29.449 82.734 42.089 -6.331 0.809 1.030 C1D GTG 29
GTG PG PG P 0 1 N N R N N N -35.571 86.626 44.630 2.857 -3.561 -0.723 PG GTG 30
GTG O1G O1G O 0 1 N N N N N N -37.007 86.744 43.999 2.739 -4.357 -1.965 O1G GTG 31
GTG O2G O2G O 0 1 N N N N N N -34.398 87.451 44.353 3.790 -4.344 0.330 O2G GTG 32
GTG O5E O5*B O 0 1 N N N N N N -35.133 86.392 46.240 3.514 -2.131 -1.062 O5E GTG 33
GTG C5E C5*B C 0 1 N N N N N N -36.426 86.328 46.937 4.767 -1.990 -1.734 C5E GTG 34
GTG C4E C4*B C 0 1 N N R N N N -36.978 87.145 48.107 5.095 -0.504 -1.896 C4E GTG 35
GTG O4E O4*B O 0 1 N N N N N N -36.401 86.776 49.312 5.325 0.089 -0.607 O4E GTG 36
GTG C3E C3*B C 0 1 N N S N N N -36.746 88.655 47.964 6.390 -0.339 -2.714 C3E GTG 37
GTG O3E O3*B O 0 1 N N N N N N -37.643 89.294 47.016 6.138 0.408 -3.906 O3E GTG 38
GTG C2E C2*B C 0 1 N N R N N N -36.901 89.080 49.326 7.336 0.446 -1.773 C2E GTG 39
GTG O2E O2*B O 0 1 N N N N N N -38.240 89.597 49.488 8.065 1.440 -2.496 O2E GTG 40
GTG C1E C1*B C 0 1 N N R N N N -36.674 87.842 50.227 6.339 1.102 -0.784 C1E GTG 41
GTG N9B N9B N 0 1 Y N N N N N -35.484 87.891 51.177 6.997 1.400 0.491 N9B GTG 42
GTG C8B C8B C 0 1 Y N N N N N -34.129 88.133 50.881 7.072 0.573 1.574 C8B GTG 43
GTG N7B N7B N 0 1 Y N N N N N -33.269 88.124 51.906 7.729 1.159 2.531 N7B GTG 44
GTG C5B C5B C 0 1 Y N N N N N -34.130 87.851 52.987 8.114 2.393 2.122 C5B GTG 45
GTG C6B C6B C 0 1 N N N N N N -33.803 87.709 54.409 8.837 3.450 2.724 C6B GTG 46
GTG O6B O6B O 0 1 N N N N N N -32.696 87.812 54.874 9.261 3.348 3.862 O6B GTG 47
GTG N1B N1B N 0 1 N N N N N N -34.947 87.429 55.225 9.046 4.575 2.005 N1B GTG 48
GTG C2B C2B C 0 1 N N N N N N -36.278 87.299 54.716 8.568 4.677 0.733 C2B GTG 49
GTG N2B N2B N 0 1 N N N N N N -37.270 87.036 55.568 8.796 5.832 0.026 N2B GTG 50
GTG N3B N3B N 0 1 N N N N N N -36.565 87.434 53.386 7.895 3.703 0.162 N3B GTG 51
GTG C4B C4B C 0 1 Y N N N N N -35.475 87.705 52.579 7.654 2.557 0.811 C4B GTG 52
GTG HOA2 2HOA H 0 0 N N N N N N -33.628 81.491 41.428 -3.107 -3.228 -1.767 HOA2 GTG 53
GTG HOB2 2HOB H 0 0 N N N N N N -34.285 83.810 45.598 0.506 -4.634 2.310 HOB2 GTG 54
GTG H8 H8 H 0 1 N N N N N N -32.125 81.801 42.747 -5.719 0.356 -1.735 H8 GTG 55
GTG HC71 1HC7 H 0 0 N N N N N N -32.940 78.855 44.980 -7.186 1.789 -4.204 HC71 GTG 56
GTG HC72 2HC7 H 0 0 N N N N N N -33.342 80.586 44.746 -6.172 3.247 -4.068 HC72 GTG 57
GTG HC73 3HC7 H 0 0 N N N N N N -33.313 79.528 43.362 -5.431 1.633 -3.946 HC73 GTG 58
GTG HN1 HN1 H 0 1 N N N N N N -28.001 77.922 45.794 -8.524 6.151 -1.147 HN1 GTG 59
GTG HN21 1HN2 H 0 0 N N N N N N -25.514 79.903 44.326 -9.024 6.530 1.105 HN21 GTG 60
GTG HN22 2HN2 H 0 0 N N N N N N -25.967 78.317 44.541 -8.646 5.375 2.265 HN22 GTG 61
GTG "H5'1" 1H5* H 0 0 N N N N N N -31.717 83.393 38.868 -5.508 -2.685 0.227 "H5'1" GTG 62
GTG "H5'2" 2H5* H 0 0 N N N N N N -31.982 84.976 39.243 -5.246 -3.338 1.862 "H5'2" GTG 63
GTG "H4'" H4* H 0 1 N N N N N N -30.622 85.026 41.088 -4.869 -0.984 2.681 "H4'" GTG 64
GTG "H3'" H3* H 0 1 N N N N N N -30.624 82.904 39.093 -7.373 -2.206 1.811 "H3'" GTG 65
GTG "HO3'" *HO3 H 0 0 N N N N N N -28.505 83.318 38.171 -8.084 -1.062 3.783 "HO3'" GTG 66
GTG "H2'" H2* H 0 1 N N N N N N -29.161 81.419 40.350 -7.987 -0.459 0.362 "H2'" GTG 67
GTG "HO2'" *HO2 H 0 0 N N N N N N -27.145 82.275 40.842 -9.300 0.060 2.328 "HO2'" GTG 68
GTG "H1'" H1* H 0 1 N N N N N N -28.492 83.006 42.592 -6.122 1.443 1.891 "H1'" GTG 69
GTG HOG2 2HOG H 0 0 N N N N N N -34.802 87.989 45.022 3.912 -3.879 1.169 HOG2 GTG 70
GTG H5B1 1H5B H 0 0 N N N N N N -37.188 86.436 46.130 5.549 -2.473 -1.150 H5B1 GTG 71
GTG H5B2 2H5B H 0 0 N N N N N N -36.519 85.266 47.263 4.707 -2.457 -2.717 H5B2 GTG 72
GTG H4B H4B H 0 1 N N N N N N -38.071 86.928 48.093 4.271 0.005 -2.396 H4B GTG 73
GTG H3B H3B H 0 1 N N N N N N -35.759 88.934 47.525 6.814 -1.313 -2.958 H3B GTG 74
GTG H3BO OH3B H 0 0 N N N N N N -37.499 90.228 46.927 6.919 0.542 -4.459 H3BO GTG 75
GTG H2B H2B H 0 1 N N N N N N -36.173 89.878 49.601 8.014 -0.229 -1.252 H2B GTG 76
GTG H2BO OH2B H 0 0 N N N N N N -38.342 89.878 50.389 8.636 1.083 -3.189 H2BO GTG 77
GTG H1B H1B H 0 1 N N N N N N -37.573 87.747 50.878 5.908 2.005 -1.215 H1B GTG 78
GTG H8B H8B H 0 1 N N N N N N -33.748 88.326 49.864 6.649 -0.419 1.628 H8B GTG 79
GTG H1BN NH1B H 0 0 N N N N N N -34.805 87.315 56.228 9.538 5.313 2.396 H1BN GTG 80
GTG H2B1 1H2B H 0 0 N N N N N N -38.218 86.943 55.205 9.291 6.560 0.434 H2B1 GTG 81
GTG H2B2 2H2B H 0 0 N N N N N N -37.266 87.741 56.305 8.462 5.920 -0.880 H2B2 GTG 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GTG PA O1A DOUB N N 1
GTG PA O2A SING N N 2
GTG PA O3A SING N N 3
GTG PA O5D SING N N 4
GTG O2A HOA2 SING N N 5
GTG O3A PB SING N N 6
GTG PB O1B DOUB N N 7
GTG PB O2B SING N N 8
GTG PB O3B SING N N 9
GTG O2B HOB2 SING N N 10
GTG O3B PG SING N N 11
GTG N9A C8A SING Y N 12
GTG N9A C4A SING Y N 13
GTG N9A C1D SING N N 14
GTG C8A N7A DOUB Y N 15
GTG C8A H8 SING N N 16
GTG N7A C7X SING N N 17
GTG N7A C5A SING Y N 18
GTG C7X HC71 SING N N 19
GTG C7X HC72 SING N N 20
GTG C7X HC73 SING N N 21
GTG C5A C6A SING N N 22
GTG C5A C4A DOUB Y N 23
GTG C6A O6A DOUB N N 24
GTG C6A N1A SING N N 25
GTG N1A C2A SING N N 26
GTG N1A HN1 SING N N 27
GTG C2A N2A SING N N 28
GTG C2A N3A DOUB N N 29
GTG N2A HN21 SING N N 30
GTG N2A HN22 SING N N 31
GTG N3A C4A SING N N 32
GTG O5D C5D SING N N 33
GTG C5D C4D SING N N 34
GTG C5D "H5'1" SING N N 35
GTG C5D "H5'2" SING N N 36
GTG C4D O4D SING N N 37
GTG C4D C3D SING N N 38
GTG C4D "H4'" SING N N 39
GTG O4D C1D SING N N 40
GTG C3D O3D SING N N 41
GTG C3D C2D SING N N 42
GTG C3D "H3'" SING N N 43
GTG O3D "HO3'" SING N N 44
GTG C2D O2D SING N N 45
GTG C2D C1D SING N N 46
GTG C2D "H2'" SING N N 47
GTG O2D "HO2'" SING N N 48
GTG C1D "H1'" SING N N 49
GTG PG O1G DOUB N N 50
GTG PG O2G SING N N 51
GTG PG O5E SING N N 52
GTG O2G HOG2 SING N N 53
GTG O5E C5E SING N N 54
GTG C5E C4E SING N N 55
GTG C5E H5B1 SING N N 56
GTG C5E H5B2 SING N N 57
GTG C4E O4E SING N N 58
GTG C4E C3E SING N N 59
GTG C4E H4B SING N N 60
GTG O4E C1E SING N N 61
GTG C3E O3E SING N N 62
GTG C3E C2E SING N N 63
GTG C3E H3B SING N N 64
GTG O3E H3BO SING N N 65
GTG C2E O2E SING N N 66
GTG C2E C1E SING N N 67
GTG C2E H2B SING N N 68
GTG O2E H2BO SING N N 69
GTG C1E N9B SING N N 70
GTG C1E H1B SING N N 71
GTG N9B C8B SING Y N 72
GTG N9B C4B SING Y N 73
GTG C8B N7B DOUB Y N 74
GTG C8B H8B SING N N 75
GTG N7B C5B SING Y N 76
GTG C5B C6B SING N N 77
GTG C5B C4B DOUB Y N 78
GTG C6B O6B DOUB N N 79
GTG C6B N1B SING N N 80
GTG N1B C2B SING N N 81
GTG N1B H1BN SING N N 82
GTG C2B N2B SING N N 83
GTG C2B N3B DOUB N N 84
GTG N2B H2B1 SING N N 85
GTG N2B H2B2 SING N N 86
GTG N3B C4B SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GTG SMILES ACDLabs 10.04 O=C1NC(=Nc2c1[n+](cn2C3OC(C(O)C3O)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c5N=C(N)NC4=O)C(O)C6O)C)N
GTG InChI InChI 1.03 InChI=1S/C21H29N10O18P3/c1-29-5-31(15-9(29)17(37)28-21(23)26-15)19-13(35)11(33)7(47-19)3-45-51(40,41)49-52(42,43)48-50(38,39)44-2-6-10(32)12(34)18(46-6)30-4-24-8-14(30)25-20(22)27-16(8)36/h4-7,10-13,18-19,32-35H,2-3H2,1H3,(H8-,22,23,25,26,27,28,36,37,38,39,40,41,42,43)/p+1/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1
GTG InChIKey InChI 1.03 FHHZHGZBHYYWTG-INFSMZHSSA-O
GTG SMILES_CANONICAL CACTVS 3.385 C[n+]1cn([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=O)NC(=Nc45)N)[C@@H](O)[C@H]2O)c6N=C(N)NC(=O)c16
GTG SMILES CACTVS 3.385 C[n+]1cn([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=O)NC(=Nc45)N)[CH](O)[CH]2O)c6N=C(N)NC(=O)c16
GTG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O
GTG SMILES "OpenEye OEToolkits" 1.7.5 C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GTG "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-9-[(2R,3R,4S,5R)-5-({[(R)-{[{[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl]-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium (non-preferred name)"
GTG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-7-methyl-6-oxo-1H-purin-7-ium-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GTG 'Create component' 2002-11-04 RCSB
GTG 'Modify descriptor' 2011-06-04 RCSB
GTG 'Modify descriptor' 2012-01-05 RCSB
GTG 'Modify coordinates' 2012-01-05 RCSB
GTG 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id GTG
_pdbx_chem_comp_synonyms.name "MRNA CAP ANALOG N7-METHYL GPPPG"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id GTG
_pdbe_chem_comp_drugbank_details.drugbank_id DB03958
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "7-methyl-guanosine-5'-triphosphate-5'-guanosine"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
GTG 'MRNA CAP ANALOG N7-METHYL GPPPG' wwPDB ?
GTG "7-methyl-guanosine-5'-triphosphate-5'-guanosine" DrugBank ?
GTG 'mRNA cap analog N7-Methyl GpppG' DrugBank ?
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
GTG DB03958 'm7GpppX diphosphatase' Humans Q96C86 unknown 1
GTG DB03958 'RNA-directed RNA polymerase lambda-3' T3D P0CK31 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GTG PA P 14.817 0.277 1
GTG O1A O 15.697 -0.938 2
GTG O2A O 13.938 1.492 3
GTG O3A O 16.032 1.157 4
GTG PB P 17.401 0.544 5
GTG O1B O 18.014 1.914 6
GTG O2B O 16.789 -0.825 7
GTG O3B O 18.771 -0.068 8
GTG N9A N 9.122 -4.256 9
GTG C8A C 9.997 -5.463 10
GTG N7A N 9.122 -6.670 11
GTG C7X C 9.588 -8.096 12
GTG C5A C 7.702 -6.213 13
GTG C6A C 6.404 -6.963 14
GTG O6A O 6.404 -8.463 15
GTG N1A N 5.104 -6.213 16
GTG C2A C 5.104 -4.713 17
GTG N2A N 3.805 -3.963 18
GTG N3A N 6.404 -3.963 19
GTG C4A C 7.702 -4.713 20
GTG O5D O 13.602 -0.602 21
GTG C5D C 12.233 0.010 22
GTG C4D C 11.018 -0.869 23
GTG O4D O 11.015 -2.369 24
GTG C3D C 9.592 -0.404 25
GTG O3D O 9.131 1.024 26
GTG C2D C 8.708 -1.615 27
GTG O2D O 7.208 -1.613 28
GTG C1D C 9.588 -2.830 29
GTG PG P 19.986 0.811 30
GTG O1G O 20.865 -0.404 31
GTG O2G O 19.106 2.026 32
GTG O5E O 21.201 1.691 33
GTG C5E C 22.570 1.079 34
GTG C4E C 23.785 1.958 35
GTG O4E O 25.211 1.492 36
GTG C3E C 23.788 3.458 37
GTG O3E O 22.576 4.342 38
GTG C2E C 25.215 3.919 39
GTG O2E O 25.681 5.345 40
GTG C1E C 26.095 2.704 41
GTG N9B N 27.595 2.701 42
GTG C8B C 28.468 1.493 43
GTG N7B N 29.888 1.948 44
GTG C5B C 29.897 3.439 45
GTG C6B C 31.015 4.439 46
GTG O6B O 32.440 3.970 47
GTG N1B N 30.709 5.907 48
GTG C2B C 29.284 6.375 49
GTG N2B N 28.977 7.843 50
GTG N3B N 28.166 5.375 51
GTG C4B C 28.472 3.907 52
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GTG PA O1A DOUBLE NONE 1
GTG PA O2A SINGLE BEGINDASH 2
GTG PA O3A SINGLE NONE 3
GTG PA O5D SINGLE NONE 4
GTG O3A PB SINGLE NONE 5
GTG PB O1B DOUBLE NONE 6
GTG PB O2B SINGLE BEGINDASH 7
GTG PB O3B SINGLE NONE 8
GTG O3B PG SINGLE NONE 9
GTG N9A C8A SINGLE NONE 10
GTG N9A C4A SINGLE NONE 11
GTG C1D N9A SINGLE BEGINWEDGE 12
GTG C8A N7A DOUBLE NONE 13
GTG N7A C7X SINGLE NONE 14
GTG N7A C5A SINGLE NONE 15
GTG C5A C6A SINGLE NONE 16
GTG C5A C4A DOUBLE NONE 17
GTG C6A O6A DOUBLE NONE 18
GTG C6A N1A SINGLE NONE 19
GTG N1A C2A SINGLE NONE 20
GTG C2A N2A SINGLE NONE 21
GTG C2A N3A DOUBLE NONE 22
GTG N3A C4A SINGLE NONE 23
GTG O5D C5D SINGLE NONE 24
GTG C4D C5D SINGLE BEGINWEDGE 25
GTG C4D O4D SINGLE NONE 26
GTG C4D C3D SINGLE NONE 27
GTG O4D C1D SINGLE NONE 28
GTG C3D O3D SINGLE BEGINDASH 29
GTG C3D C2D SINGLE NONE 30
GTG C2D O2D SINGLE BEGINDASH 31
GTG C2D C1D SINGLE NONE 32
GTG PG O1G DOUBLE NONE 33
GTG PG O2G SINGLE BEGINWEDGE 34
GTG PG O5E SINGLE NONE 35
GTG O5E C5E SINGLE NONE 36
GTG C4E C5E SINGLE BEGINDASH 37
GTG C4E O4E SINGLE NONE 38
GTG C4E C3E SINGLE NONE 39
GTG O4E C1E SINGLE NONE 40
GTG C3E O3E SINGLE BEGINWEDGE 41
GTG C3E C2E SINGLE NONE 42
GTG C2E O2E SINGLE BEGINWEDGE 43
GTG C2E C1E SINGLE NONE 44
GTG C1E N9B SINGLE BEGINDASH 45
GTG N9B C8B SINGLE NONE 46
GTG N9B C4B SINGLE NONE 47
GTG C8B N7B DOUBLE NONE 48
GTG N7B C5B SINGLE NONE 49
GTG C5B C6B SINGLE NONE 50
GTG C5B C4B DOUBLE NONE 51
GTG C6B O6B DOUBLE NONE 52
GTG C6B N1B SINGLE NONE 53
GTG N1B C2B SINGLE NONE 54
GTG C2B N2B SINGLE NONE 55
GTG C2B N3B DOUBLE NONE 56
GTG N3B C4B SINGLE NONE 57
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GTG MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)O[PH](=O)OC[C@@H]2CC[C@H](n3c[nH+]c4c(=O)[nH]cnc43)O2)O1' InChI=1S/C20H25N8O11P3/c29-19-15-17(21-7-23-19)27(9-25-15)13-3-1-11(36-13)5-34-40(31)38-42(33)39-41(32)35-6-12-2-4-14(37-12)28-10-26-16-18(28)22-8-24-20(16)30/h7-14,40-42H,1-6H2,(H,21,23,29)(H,22,24,30)/p+1/t11-,12-,13+,14+/m0/s1 BJTIJDJBAIRTKU-IGQOVBAYSA-O
GTG imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
GTG phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
GTG purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
GTG pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
GTG ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GTG PA S1 1
GTG O1A S1 1
GTG O3A S1 1
GTG PB S1 1
GTG O1B S1 1
GTG O3B S1 1
GTG N9A S1 1
GTG C8A S1 1
GTG N7A S1 1
GTG C5A S1 1
GTG C6A S1 1
GTG O6A S1 1
GTG N1A S1 1
GTG C2A S1 1
GTG N3A S1 1
GTG C4A S1 1
GTG O5D S1 1
GTG C5D S1 1
GTG C4D S1 1
GTG O4D S1 1
GTG C3D S1 1
GTG C2D S1 1
GTG C1D S1 1
GTG PG S1 1
GTG O1G S1 1
GTG O5E S1 1
GTG C5E S1 1
GTG C4E S1 1
GTG O4E S1 1
GTG C3E S1 1
GTG C2E S1 1
GTG C1E S1 1
GTG N9B S1 1
GTG C8B S1 1
GTG N7B S1 1
GTG C5B S1 1
GTG C6B S1 1
GTG O6B S1 1
GTG N1B S1 1
GTG C2B S1 1
GTG N3B S1 1
GTG C4B S1 1
GTG C5A F1 1
GTG C4A F1 1
GTG N9A F1 1
GTG C8A F1 1
GTG N7A F1 1
GTG C5B F1 2
GTG C4B F1 2
GTG N9B F1 2
GTG C8B F1 2
GTG N7B F1 2
GTG O2A F2 1
GTG PA F2 1
GTG O1A F2 1
GTG O3A F2 1
GTG O5D F2 1
GTG O3A F2 2
GTG PB F2 2
GTG O1B F2 2
GTG O2B F2 2
GTG O3B F2 2
GTG O3B F2 3
GTG PG F2 3
GTG O1G F2 3
GTG O2G F2 3
GTG O5E F2 3
GTG N7A F3 1
GTG C8A F3 1
GTG N9A F3 1
GTG C4A F3 1
GTG C5A F3 1
GTG C6A F3 1
GTG N1A F3 1
GTG C2A F3 1
GTG N3A F3 1
GTG N7B F3 2
GTG C8B F3 2
GTG N9B F3 2
GTG C4B F3 2
GTG C5B F3 2
GTG C6B F3 2
GTG N1B F3 2
GTG C2B F3 2
GTG N3B F3 2
GTG C5A F4 1
GTG C6A F4 1
GTG N1A F4 1
GTG C2A F4 1
GTG N3A F4 1
GTG C4A F4 1
GTG C5B F4 2
GTG C6B F4 2
GTG N1B F4 2
GTG C2B F4 2
GTG N3B F4 2
GTG C4B F4 2
GTG C2D F5 1
GTG C3D F5 1
GTG C4D F5 1
GTG O4D F5 1
GTG C1D F5 1
GTG C5D F5 1
GTG O5D F5 1
GTG O3D F5 1
GTG O2D F5 1
GTG C2E F5 2
GTG C3E F5 2
GTG C4E F5 2
GTG O4E F5 2
GTG C1E F5 2
GTG C5E F5 2
GTG O5E F5 2
GTG O3E F5 2
GTG O2E F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id GTG
_pdbe_chem_comp_rdkit_properties.exactmw 803.095
_pdbe_chem_comp_rdkit_properties.amw 803.445
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 28
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 13
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 22
_pdbe_chem_comp_rdkit_properties.NumHBD 11
_pdbe_chem_comp_rdkit_properties.NumHBA 25
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 52
_pdbe_chem_comp_rdkit_properties.NumAtoms 82
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 31
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.524
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 11
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 329.217
_pdbe_chem_comp_rdkit_properties.tpsa 418.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP -4.366
_pdbe_chem_comp_rdkit_properties.CrippenMR 158.056
_pdbe_chem_comp_rdkit_properties.chi0v 26.346
_pdbe_chem_comp_rdkit_properties.chi1v 16.718
_pdbe_chem_comp_rdkit_properties.chi2v 9.500
_pdbe_chem_comp_rdkit_properties.chi3v 9.500
_pdbe_chem_comp_rdkit_properties.chi4v 6.757
_pdbe_chem_comp_rdkit_properties.chi0n 53.662
_pdbe_chem_comp_rdkit_properties.chi1n 26.377
_pdbe_chem_comp_rdkit_properties.chi2n 5.670
_pdbe_chem_comp_rdkit_properties.chi3n 5.670
_pdbe_chem_comp_rdkit_properties.chi4n 3.753
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.530
_pdbe_chem_comp_rdkit_properties.kappa1 15.677
_pdbe_chem_comp_rdkit_properties.kappa2 13.710
_pdbe_chem_comp_rdkit_properties.kappa3 7.462
_pdbe_chem_comp_rdkit_properties.Phi 4.133
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GTG UniChem DrugBank DB03958
GTG UniChem ChEBI 191209
GTG UniChem ZINC ZINC000085547903
GTG UniChem SureChEMBL SCHEMBL18769131
GTG UniChem Nikkaji J1.069.307A
GTG UniChem MetaboLights MTBLC191209
GTG UniChem BRENDA 106997
GTG UniChem BRENDA 207476
GTG UniChem 'Probes And Drugs' PD059547
GTG UniChem PubChem 135442196
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GTG PA -0.071 0.501 2.821 ETKDGv3 1
GTG O1A 1.159 1.380 2.852 ETKDGv3 2
GTG O2A -1.310 1.292 3.661 ETKDGv3 3
GTG O3A 0.256 -0.979 3.598 ETKDGv3 4
GTG PB 1.344 -1.857 2.625 ETKDGv3 5
GTG O1B 1.820 -3.047 3.427 ETKDGv3 6
GTG O2B 2.684 -0.901 2.218 ETKDGv3 7
GTG O3B 0.537 -2.409 1.231 ETKDGv3 8
GTG N9A -5.635 -0.520 -0.284 ETKDGv3 9
GTG C8A -5.811 -0.204 1.104 ETKDGv3 10
GTG N7A -6.987 0.289 1.359 ETKDGv3 11
GTG C7X -7.431 0.834 2.637 ETKDGv3 12
GTG C5A -7.652 0.376 0.102 ETKDGv3 13
GTG C6A -8.898 1.053 -0.254 ETKDGv3 14
GTG O6A -9.665 1.541 0.617 ETKDGv3 15
GTG N1A -9.208 1.149 -1.652 ETKDGv3 16
GTG C2A -8.278 0.623 -2.627 ETKDGv3 17
GTG N2A -8.563 0.742 -4.020 ETKDGv3 18
GTG N3A -7.168 0.050 -2.239 ETKDGv3 19
GTG C4A -6.867 -0.083 -0.842 ETKDGv3 20
GTG O5D -0.541 0.257 1.200 ETKDGv3 21
GTG C5D -1.838 -0.292 1.186 ETKDGv3 22
GTG C4D -2.199 -0.711 -0.245 ETKDGv3 23
GTG O4D -3.446 -1.378 -0.227 ETKDGv3 24
GTG C3D -2.278 0.493 -1.195 ETKDGv3 25
GTG O3D -1.791 0.137 -2.465 ETKDGv3 26
GTG C2D -3.761 0.759 -1.244 ETKDGv3 27
GTG O2D -4.186 1.347 -2.452 ETKDGv3 28
GTG C1D -4.360 -0.623 -0.992 ETKDGv3 29
GTG PG 1.706 -3.041 0.166 ETKDGv3 30
GTG O1G 0.999 -3.790 -0.942 ETKDGv3 31
GTG O2G 2.729 -4.125 0.971 ETKDGv3 32
GTG O5E 2.651 -1.785 -0.500 ETKDGv3 33
GTG C5E 1.817 -0.966 -1.287 ETKDGv3 34
GTG C4E 2.627 0.190 -1.887 ETKDGv3 35
GTG O4E 3.151 0.988 -0.845 ETKDGv3 36
GTG C3E 3.774 -0.305 -2.775 ETKDGv3 37
GTG O3E 3.858 0.447 -3.965 ETKDGv3 38
GTG C2E 4.990 -0.118 -1.896 ETKDGv3 39
GTG O2E 6.124 0.252 -2.638 ETKDGv3 40
GTG C1E 4.560 1.002 -0.953 ETKDGv3 41
GTG N9B 5.151 0.849 0.379 ETKDGv3 42
GTG C8B 4.672 1.501 1.567 ETKDGv3 43
GTG N7B 5.577 1.664 2.487 ETKDGv3 44
GTG C5B 6.756 1.122 1.909 ETKDGv3 45
GTG C6B 8.113 1.119 2.441 ETKDGv3 46
GTG O6B 8.375 1.553 3.594 ETKDGv3 47
GTG N1B 9.145 0.602 1.587 ETKDGv3 48
GTG C2B 8.802 0.139 0.260 ETKDGv3 49
GTG N2B 9.819 -0.364 -0.605 ETKDGv3 50
GTG N3B 7.562 0.184 -0.156 ETKDGv3 51
GTG C4B 6.525 0.684 0.701 ETKDGv3 52
GTG HOA2 -1.003 1.314 4.602 ETKDGv3 53
GTG HOB2 3.130 -0.708 3.081 ETKDGv3 54
GTG H8 -5.031 -0.302 1.848 ETKDGv3 55
GTG HC71 -8.489 0.554 2.818 ETKDGv3 56
GTG HC72 -7.339 1.940 2.621 ETKDGv3 57
GTG HC73 -6.816 0.429 3.469 ETKDGv3 58
GTG HN1 -10.091 1.614 -1.962 ETKDGv3 59
GTG HN21 -9.443 1.201 -4.342 ETKDGv3 60
GTG HN22 -7.894 0.371 -4.731 ETKDGv3 61
GTG "H5'1" -1.897 -1.199 1.830 ETKDGv3 62
GTG "H5'2" -2.579 0.458 1.543 ETKDGv3 63
GTG "H4'" -1.424 -1.427 -0.600 ETKDGv3 64
GTG "H3'" -1.737 1.392 -0.815 ETKDGv3 65
GTG "HO3'" -0.802 0.196 -2.415 ETKDGv3 66
GTG "H2'" -4.024 1.443 -0.407 ETKDGv3 67
GTG "HO2'" -4.093 0.680 -3.181 ETKDGv3 68
GTG "H1'" -4.524 -1.163 -1.951 ETKDGv3 69
GTG HOG2 2.137 -4.864 1.263 ETKDGv3 70
GTG H5B1 1.005 -0.527 -0.669 ETKDGv3 71
GTG H5B2 1.363 -1.544 -2.123 ETKDGv3 72
GTG H4B 1.926 0.812 -2.487 ETKDGv3 73
GTG H3B 3.663 -1.378 -3.050 ETKDGv3 74
GTG H3BO 3.947 1.406 -3.721 ETKDGv3 75
GTG H2B 5.184 -1.052 -1.318 ETKDGv3 76
GTG H2BO 6.445 -0.573 -3.087 ETKDGv3 77
GTG H1B 4.866 1.988 -1.369 ETKDGv3 78
GTG H8B 3.656 1.852 1.685 ETKDGv3 79
GTG H1BN 10.134 0.571 1.919 ETKDGv3 80
GTG H2B1 10.812 -0.403 -0.286 ETKDGv3 81
GTG H2B2 9.580 -0.698 -1.565 ETKDGv3 82
#