Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GTG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 82


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P PA R N N 0 -2.772 -3.743 0.335
2 O1A O O1A N N N 0 -3.035 -4.959 1.136
3 O2A O O2A N N N 0 -3.249 -3.986 -1.183
4 O3A O O3A N N N 0 -1.196 -3.416 0.356
5 PB P PB N N N 0 0.133 -4.307 0.177
6 C8A C C8A N Y N 0 -6.194 1.282 -1.447
7 O1B O O1B N N N 0 -0.037 -5.221 -0.974
8 O2B O O2B N N N 0 0.386 -5.169 1.514
9 O3B O O3B N N N 0 1.395 -3.342 -0.085
10 N9A N N9A N Y N 0 -6.536 1.624 -0.17
11 N7A N N7A N Y N 1 -6.527 2.238 -2.263
12 C7X C C7MA N N N 0 -6.316 2.226 -3.713
13 C5A C C5A N Y N 0 -7.101 3.247 -1.564
14 C6A C C6A N N N 0 -7.642 4.506 -1.914
15 O6A O O6A N N N 0 -7.653 4.88 -3.075
16 N1A N N1A N N N 0 -8.148 5.283 -0.931
17 C2A C C2A N N N 0 -8.13 4.855 0.363
18 N2A N N2A N N N 0 -8.651 5.666 1.34
19 N3A N N3A N N N 0 -7.63 3.688 0.701
20 C4A C C4A N Y N 0 -7.112 2.864 -0.217
21 O5D O O5*A N N N 0 -3.586 -2.502 0.961
22 C5D C C5*A N N N 0 -4.998 -2.527 1.177
23 C4D C C4*A R N N 0 -5.445 -1.195 1.781
24 O4D O O4*A N N N 0 -5.26 -0.138 0.824
25 C3D C C3*A S N N 0 -6.948 -1.25 2.118
26 O3D O O3*A N N N 0 -7.155 -1.038 3.515
27 C2D C C2*A R N N 0 -7.564 -0.091 1.296
28 O2D O O2*A N N N 0 -8.55 0.607 2.06
29 C1D C C1*A R N N 0 -6.331 0.809 1.03
30 PG P PG R N N 0 2.857 -3.561 -0.723
31 O1G O O1G N N N 0 2.739 -4.357 -1.965
32 O2G O O2G N N N 0 3.79 -4.344 0.33
33 O5E O O5*B N N N 0 3.514 -2.131 -1.062
34 C5E C C5*B N N N 0 4.767 -1.99 -1.734
35 C4E C C4*B R N N 0 5.095 -0.504 -1.896
36 O4E O O4*B N N N 0 5.325 0.089 -0.607
37 C3E C C3*B S N N 0 6.39 -0.339 -2.714
38 O3E O O3*B N N N 0 6.138 0.408 -3.906
39 C2E C C2*B R N N 0 7.336 0.446 -1.773
40 O2E O O2*B N N N 0 8.065 1.44 -2.496
41 C6B C C6B N N N 0 8.837 3.45 2.724
42 C1E C C1*B R N N 0 6.339 1.102 -0.784
43 N9B N N9B N Y N 0 6.997 1.4 0.491
44 C8B C C8B N Y N 0 7.072 0.573 1.574
45 N7B N N7B N Y N 0 7.729 1.159 2.531
46 C5B C C5B N Y N 0 8.114 2.393 2.122
47 N1B N N1B N N N 0 9.046 4.575 2.005
48 C2B C C2B N N N 0 8.568 4.677 0.733
49 N2B N N2B N N N 0 8.796 5.832 0.026
50 N3B N N3B N N N 0 7.895 3.703 0.162
51 C4B C C4B N Y N 0 7.654 2.557 0.811
52 HOA2 H 2HOA N N N 0 -3.107 -3.228 -1.767
53 HOB2 H 2HOB N N N 0 0.506 -4.634 2.31
54 H8 H H8 N N N 0 -5.719 0.356 -1.735
55 HC71 H 1HC7 N N N 0 -7.186 1.789 -4.204
56 HC72 H 2HC7 N N N 0 -6.172 3.247 -4.068
57 HC73 H 3HC7 N N N 0 -5.431 1.633 -3.946
58 HN1 H HN1 N N N 0 -8.524 6.151 -1.147
59 HN21 H 1HN2 N N N 0 -9.024 6.53 1.105
60 HN22 H 2HN2 N N N 0 -8.646 5.375 2.265
61 H5'1 H 1H5* N N N 0 -5.508 -2.685 0.227
62 H5'2 H 2H5* N N N 0 -5.246 -3.338 1.862
63 H4' H H4* N N N 0 -4.869 -0.984 2.681
64 H3' H H3* N N N 0 -7.373 -2.206 1.811
65 HO3' H *HO3 N N N 0 -8.084 -1.062 3.783
66 H2' H H2* N N N 0 -7.987 -0.459 0.362
67 HO2' H *HO2 N N N 0 -9.3 0.06 2.328
68 H1' H H1* N N N 0 -6.122 1.443 1.891
69 HOG2 H 2HOG N N N 0 3.912 -3.879 1.169
70 H5B1 H 1H5B N N N 0 5.549 -2.473 -1.15
71 O6B O O6B N N N 0 9.261 3.348 3.862
72 H5B2 H 2H5B N N N 0 4.707 -2.457 -2.717
73 H4B H H4B N N N 0 4.271 0.005 -2.396
74 H3B H H3B N N N 0 6.814 -1.313 -2.958
75 H3BO H OH3B N N N 0 6.919 0.542 -4.459
76 H2B H H2B N N N 0 8.014 -0.229 -1.252
77 H2BO H OH2B N N N 0 8.636 1.083 -3.189
78 H1B H H1B N N N 0 5.908 2.005 -1.215
79 H8B H H8B N N N 0 6.649 -0.419 1.628
80 H1BN H NH1B N N N 0 9.538 5.313 2.396
81 H2B1 H 1H2B N N N 0 9.291 6.56 0.434
82 H2B2 H 2H2B N N N 0 8.462 5.92 -0.88