Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : G2P    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PG O1G P O sing 1.62 N N
2 PG O2G P O doub 1.5 N N
3 PG O3G P O sing 1.62 N N
4 PG O3B P O sing 1.61 N N
5 O3B PB O P sing 1.61 N N
6 PB O1B P O sing 1.62 N N
7 PB O2B P O doub 1.5 N N
8 PB C3A P C sing 1.81 N N
9 C3A PA C P sing 1.81 N N
10 C3A H3A1 C H sing 1.1 N N
11 C3A H3A2 C H sing 1.1 N N
12 PA O1A P O sing 1.62 N N
13 PA O2A P O doub 1.5 N N
14 PA O5' P O sing 1.62 N N
15 O5' C5' O C sing 1.42 N N
16 C5' C4' C C sing 1.52 N N
17 C5' H5'1 C H sing 1.09 N N
18 C5' H5'2 C H sing 1.09 N N
19 C4' O4' C O sing 1.45 N N
20 C4' C3' C C sing 1.52 N N
21 C4' H4' C H sing 1.09 N N
22 O4' C1' O C sing 1.44 N N
23 C3' O3' C O sing 1.43 N N
24 C3' C2' C C sing 1.52 N N
25 C3' H3' C H sing 1.09 N N
26 O3' HA O H sing 0.97 N N
27 C2' O2' C O sing 1.41 N N
28 C2' C1' C C sing 1.52 N N
29 C2' H2' C H sing 1.1 N N
30 O2' HB O H sing 0.97 N N
31 C1' N9 C N sing 1.46 N N
32 C1' H1' C H sing 1.1 N N
33 N9 C8 N C sing 1.37 N Y
34 N9 C4 N C sing 1.36 N Y
35 C8 N7 C N doub 1.32 N Y
36 C8 H8 C H sing 1.08 N N
37 N7 C5 N C sing 1.36 N Y
38 C5 C6 C C sing 1.44 N Y
39 C5 C4 C C doub 1.37 N Y
40 C6 O6 C O doub 1.22 N N
41 C6 N1 C N sing 1.4 N Y
42 N1 C2 N C sing 1.41 N Y
43 N1 H1 N H sing 1.02 N N
44 C2 N2 C N sing 1.37 N N
45 C2 N3 C N doub 1.32 N Y
46 N2 H2N1 N H sing 0.99 N N
47 N2 H2N2 N H sing 0.99 N N
48 N3 C4 N C sing 1.35 N Y
49 HO1 O1G H O sing 0.98 N N
50 HO2 O3G H O sing 0.98 N N
51 HO3 O1A H O sing 0.98 N N
52 HO4 O1B H O sing 0.98 N N