data_G2P
#
_chem_comp.id G2P
_chem_comp.name "PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H18 N5 O13 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-08-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 521.208
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G2P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1W58
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G2P PG PG P 0 1 N N N N N N 4.755 36.871 1.293 -4.641 0.532 4.833 PG G2P 1
G2P O1G O1G O 0 1 N N N N N N 4.715 37.452 2.633 -3.160 -0.078 5.052 O1G G2P 2
G2P O2G O2G O 0 1 N N N N N N 3.922 37.646 0.382 -5.476 0.603 6.078 O2G G2P 3
G2P O3G O3G O 0 1 N N N N N N 4.077 35.479 1.293 -5.251 -0.385 3.650 O3G G2P 4
G2P O3B O3B O 0 1 N N N N N N 6.326 36.708 0.845 -4.367 1.954 4.119 O3B G2P 5
G2P PB PB P 0 1 N N R N N N 6.923 36.150 -0.599 -5.360 3.062 3.495 PB G2P 6
G2P O1B O1B O 0 1 N N N N N N 8.123 35.342 -0.364 -5.898 2.375 2.136 O1B G2P 7
G2P O2B O2B O 0 1 N N N N N N 6.021 35.475 -1.495 -6.429 3.563 4.419 O2B G2P 8
G2P C3A C3A C 0 1 N N N N N N 7.527 37.631 -1.370 -4.231 4.341 2.900 C3A G2P 9
G2P PA PA P 0 1 N N S N N N 7.431 37.652 -3.159 -2.920 4.063 1.687 PA G2P 10
G2P O1A O1A O 0 1 N N N N N N 7.741 36.355 -3.793 -3.696 3.307 0.487 O1A G2P 11
G2P O2A O2A O 0 1 N N N N N N 6.256 38.366 -3.671 -2.184 5.303 1.271 O2A G2P 12
G2P "O5'" O5* O 0 1 N N N N N N 8.765 38.486 -3.322 -2.015 2.891 2.334 "O5'" G2P 13
G2P "C5'" C5* C 0 1 N N N N N N 8.993 39.776 -2.831 -0.881 2.428 1.621 "C5'" G2P 14
G2P "C4'" C4* C 0 1 N N R N N N 10.373 40.252 -3.352 -0.199 1.333 2.429 "C4'" G2P 15
G2P "O4'" O4* O 0 1 N N N N N N 10.816 39.438 -4.501 -1.128 0.236 2.584 "O4'" G2P 16
G2P "C3'" C3* C 0 1 N N S N N N 10.266 41.711 -3.808 1.032 0.761 1.734 "C3'" G2P 17
G2P "O3'" O3* O 0 1 N N N N N N 10.868 42.521 -2.790 1.918 0.238 2.725 "O3'" G2P 18
G2P "C2'" C2* C 0 1 N N R N N N 10.965 41.727 -5.174 0.447 -0.380 0.926 "C2'" G2P 19
G2P "O2'" O2* O 0 1 N N N N N N 12.290 42.200 -5.087 1.399 -1.370 0.596 "O2'" G2P 20
G2P "C1'" C1* C 0 1 N N R N N N 10.976 40.282 -5.676 -0.616 -0.910 1.877 "C1'" G2P 21
G2P N9 N9 N 0 1 Y N N N N N 9.855 40.015 -6.637 -1.713 -1.611 1.213 N9 G2P 22
G2P C8 C8 C 0 1 Y N N N N N 8.483 40.172 -6.463 -2.843 -1.031 0.688 C8 G2P 23
G2P N7 N7 N 0 1 Y N N N N N 7.748 39.850 -7.475 -3.659 -1.916 0.150 N7 G2P 24
G2P C5 C5 C 0 1 Y N N N N N 8.671 39.434 -8.445 -3.023 -3.107 0.340 C5 G2P 25
G2P C6 C6 C 0 1 Y N N N N N 8.478 38.945 -9.808 -3.448 -4.424 -0.044 C6 G2P 26
G2P O6 O6 O 0 1 N N N N N N 7.417 38.784 -10.437 -4.500 -4.657 -0.626 O6 G2P 27
G2P N1 N1 N 0 1 Y N N N N N 9.699 38.635 -10.437 -2.501 -5.385 0.338 N1 G2P 28
G2P C2 C2 C 0 1 Y N N N N N 10.960 38.762 -9.860 -1.287 -5.112 1.010 C2 G2P 29
G2P N2 N2 N 0 1 N N N N N N 12.030 38.420 -10.602 -0.510 -6.207 1.286 N2 G2P 30
G2P N3 N3 N 0 1 Y N N N N N 11.135 39.212 -8.595 -0.922 -3.895 1.351 N3 G2P 31
G2P C4 C4 C 0 1 Y N N N N N 9.974 39.531 -7.941 -1.822 -2.953 0.991 C4 G2P 32
G2P H3A1 1H3A H 0 0 N N N N N N 8.572 37.837 -1.039 -3.751 4.775 3.785 H3A1 G2P 33
G2P H3A2 2H3A H 0 0 N N N N N N 7.008 38.523 -0.947 -4.865 5.131 2.480 H3A2 G2P 34
G2P "H5'1" 1H5* H 0 0 N N N N N N 8.908 39.836 -1.721 -1.208 2.042 0.651 "H5'1" G2P 35
G2P "H5'2" 2H5* H 0 0 N N N N N N 8.170 40.485 -3.083 -0.199 3.269 1.460 "H5'2" G2P 36
G2P "H4'" H4* H 0 1 N N N N N N 11.125 40.175 -2.532 0.033 1.713 3.429 "H4'" G2P 37
G2P "H3'" H3* H 0 1 N N N N N N 9.194 41.991 -3.929 1.592 1.484 1.136 "H3'" G2P 38
G2P HA HA H 0 1 N N N N N N 10.802 43.425 -3.073 2.578 0.927 2.893 HA G2P 39
G2P "H2'" H2* H 0 1 N N N N N N 10.386 42.364 -5.883 -0.005 0.000 0.002 "H2'" G2P 40
G2P HB HB H 0 1 N N N N N N 12.723 42.210 -5.933 2.066 -0.951 0.024 HB G2P 41
G2P "H1'" H1* H 0 1 N N N N N N 11.953 40.062 -6.167 -0.213 -1.625 2.603 "H1'" G2P 42
G2P H8 H8 H 0 1 N N N N N N 8.051 40.548 -5.520 -3.012 0.037 0.729 H8 G2P 43
G2P H1 H1 H 0 1 N N N N N N 9.656 38.289 -11.395 -2.704 -6.355 0.113 H1 G2P 44
G2P H2N1 1H2N H 0 0 N N N N N N 12.954 38.513 -10.179 0.044 -6.196 2.110 H2N1 G2P 45
G2P H2N2 2H2N H 0 0 N N N N N N 11.898 38.081 -11.555 -0.532 -6.972 0.651 H2N2 G2P 46
G2P HO1 HO1 H 0 1 N N N N N N 4.706 36.756 3.280 -3.059 -0.905 5.571 HO1 G2P 47
G2P HO2 HO2 H 0 1 N N N N N N 3.938 35.194 0.397 -6.192 -0.272 3.399 HO2 G2P 48
G2P HO3 HO3 H 0 1 N N N N N N 7.808 36.470 -4.734 -3.203 3.080 -0.329 HO3 G2P 49
G2P HO4 HO4 H 0 1 N N N N N N 8.555 35.167 -1.192 -6.563 1.657 2.197 HO4 G2P 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G2P PG O1G SING N N 1
G2P PG O2G DOUB N N 2
G2P PG O3G SING N N 3
G2P PG O3B SING N N 4
G2P O3B PB SING N N 5
G2P PB O1B SING N N 6
G2P PB O2B DOUB N N 7
G2P PB C3A SING N N 8
G2P C3A PA SING N N 9
G2P C3A H3A1 SING N N 10
G2P C3A H3A2 SING N N 11
G2P PA O1A SING N N 12
G2P PA O2A DOUB N N 13
G2P PA "O5'" SING N N 14
G2P "O5'" "C5'" SING N N 15
G2P "C5'" "C4'" SING N N 16
G2P "C5'" "H5'1" SING N N 17
G2P "C5'" "H5'2" SING N N 18
G2P "C4'" "O4'" SING N N 19
G2P "C4'" "C3'" SING N N 20
G2P "C4'" "H4'" SING N N 21
G2P "O4'" "C1'" SING N N 22
G2P "C3'" "O3'" SING N N 23
G2P "C3'" "C2'" SING N N 24
G2P "C3'" "H3'" SING N N 25
G2P "O3'" HA SING N N 26
G2P "C2'" "O2'" SING N N 27
G2P "C2'" "C1'" SING N N 28
G2P "C2'" "H2'" SING N N 29
G2P "O2'" HB SING N N 30
G2P "C1'" N9 SING N N 31
G2P "C1'" "H1'" SING N N 32
G2P N9 C8 SING Y N 33
G2P N9 C4 SING Y N 34
G2P C8 N7 DOUB Y N 35
G2P C8 H8 SING N N 36
G2P N7 C5 SING Y N 37
G2P C5 C6 SING Y N 38
G2P C5 C4 DOUB Y N 39
G2P C6 O6 DOUB N N 40
G2P C6 N1 SING Y N 41
G2P N1 C2 SING Y N 42
G2P N1 H1 SING N N 43
G2P C2 N2 SING N N 44
G2P C2 N3 DOUB Y N 45
G2P N2 H2N1 SING N N 46
G2P N2 H2N2 SING N N 47
G2P N3 C4 SING Y N 48
G2P HO1 O1G SING N N 49
G2P HO2 O3G SING N N 50
G2P HO3 O1A SING N N 51
G2P HO4 O1B SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G2P SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
G2P SMILES_CANONICAL CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](O)(=O)C[P@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
G2P SMILES CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
G2P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(C[P@@](=O)(O)OP(=O)(O)O)O)O)O)N=C(NC2=O)N
G2P SMILES "OpenEye OEToolkits" 1.5.0 c1nc2c(n1C3C(C(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N=C(NC2=O)N
G2P InChI InChI 1.03 InChI=1S/C11H18N5O13P3/c12-11-14-8-5(9(19)15-11)13-2-16(8)10-7(18)6(17)4(28-10)1-27-30(20,21)3-31(22,23)29-32(24,25)26/h2,4,6-7,10,17-18H,1,3H2,(H,20,21)(H,22,23)(H2,24,25,26)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1
G2P InChIKey InChI 1.03 GXTIEXDFEKYVGY-KQYNXXCUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G2P "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine"
G2P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]methyl-phosphonooxy-phosphinic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G2P 'Create component' 2004-08-06 EBI
G2P 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id G2P
_pdbe_chem_comp_drugbank_details.drugbank_id DB03532
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Phosphomethylphosphonic acid guanylate ester'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id G2P
_pdbe_chem_comp_synonyms.name 'Phosphomethylphosphonic acid guanylate ester'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id G2P
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03532
_pdbe_chem_comp_drugbank_classification.parent 'Purine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine ribonucleoside monophosphates. These are nucleotides consisting of a purine base linked to a ribose to which one monophosphate group is attached.'
#
_pdbe_chem_comp_drugbank_targets.comp_id G2P
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03532
_pdbe_chem_comp_drugbank_targets.name 'Cell division protein FtsZ'
_pdbe_chem_comp_drugbank_targets.organism 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)'
_pdbe_chem_comp_drugbank_targets.uniprot_id O08398
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G2P PG P 19.986 3.710 1
G2P O1G O 21.201 4.589 2
G2P O2G O 20.865 2.495 3
G2P O3G O 19.106 4.925 4
G2P O3B O 18.771 2.830 5
G2P PB P 17.401 3.442 6
G2P O1B O 18.014 4.812 7
G2P O2B O 16.789 2.073 8
G2P C3A C 16.032 4.055 9
G2P PA P 14.817 3.175 10
G2P O1A O 15.697 1.960 11
G2P O2A O 13.938 4.391 12
G2P "O5'" O 13.602 2.296 13
G2P "C5'" C 12.233 2.908 14
G2P "C4'" C 11.018 2.029 15
G2P "O4'" O 11.015 0.529 16
G2P "C3'" C 9.592 2.495 17
G2P "O3'" O 9.131 3.922 18
G2P "C2'" C 8.708 1.283 19
G2P "O2'" O 7.208 1.285 20
G2P "C1'" C 9.588 0.068 21
G2P N9 N 9.122 -1.358 22
G2P C8 C 9.997 -2.565 23
G2P N7 N 9.122 -3.772 24
G2P C5 C 7.702 -3.315 25
G2P C6 C 6.404 -4.065 26
G2P O6 O 6.404 -5.565 27
G2P N1 N 5.104 -3.315 28
G2P C2 C 5.104 -1.815 29
G2P N2 N 3.805 -1.065 30
G2P N3 N 6.404 -1.065 31
G2P C4 C 7.702 -1.815 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G2P PG O1G SINGLE NONE 1
G2P PG O2G DOUBLE NONE 2
G2P PG O3G SINGLE NONE 3
G2P PG O3B SINGLE NONE 4
G2P O3B PB SINGLE NONE 5
G2P PB O1B SINGLE BEGINDASH 6
G2P PB O2B DOUBLE NONE 7
G2P PB C3A SINGLE NONE 8
G2P C3A PA SINGLE NONE 9
G2P PA O1A SINGLE BEGINWEDGE 10
G2P PA O2A DOUBLE NONE 11
G2P PA "O5'" SINGLE NONE 12
G2P "O5'" "C5'" SINGLE NONE 13
G2P "C4'" "C5'" SINGLE BEGINWEDGE 14
G2P "C4'" "O4'" SINGLE NONE 15
G2P "C4'" "C3'" SINGLE NONE 16
G2P "O4'" "C1'" SINGLE NONE 17
G2P "C3'" "O3'" SINGLE BEGINDASH 18
G2P "C3'" "C2'" SINGLE NONE 19
G2P "C2'" "O2'" SINGLE BEGINDASH 20
G2P "C2'" "C1'" SINGLE NONE 21
G2P "C1'" N9 SINGLE BEGINWEDGE 22
G2P N9 C8 SINGLE NONE 23
G2P N9 C4 SINGLE NONE 24
G2P C8 N7 DOUBLE NONE 25
G2P N7 C5 SINGLE NONE 26
G2P C5 C6 SINGLE NONE 27
G2P C5 C4 DOUBLE NONE 28
G2P C6 O6 DOUBLE NONE 29
G2P C6 N1 SINGLE NONE 30
G2P N1 C2 SINGLE NONE 31
G2P C2 N2 SINGLE NONE 32
G2P C2 N3 DOUBLE NONE 33
G2P N3 C4 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G2P MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
G2P imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
G2P phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
G2P purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
G2P pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
G2P ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G2P "C4'" S1 1
G2P "O4'" S1 1
G2P "C3'" S1 1
G2P "C2'" S1 1
G2P "C1'" S1 1
G2P N9 S1 1
G2P C8 S1 1
G2P N7 S1 1
G2P C5 S1 1
G2P C6 S1 1
G2P O6 S1 1
G2P N1 S1 1
G2P C2 S1 1
G2P N3 S1 1
G2P C4 S1 1
G2P C5 F1 1
G2P C4 F1 1
G2P N9 F1 1
G2P C8 F1 1
G2P N7 F1 1
G2P O1G F2 1
G2P PG F2 1
G2P O2G F2 1
G2P O3G F2 1
G2P O3B F2 1
G2P N7 F3 1
G2P C8 F3 1
G2P N9 F3 1
G2P C4 F3 1
G2P C5 F3 1
G2P C6 F3 1
G2P N1 F3 1
G2P C2 F3 1
G2P N3 F3 1
G2P C5 F4 1
G2P C6 F4 1
G2P N1 F4 1
G2P C2 F4 1
G2P N3 F4 1
G2P C4 F4 1
G2P "C2'" F5 1
G2P "C3'" F5 1
G2P "C4'" F5 1
G2P "O4'" F5 1
G2P "C1'" F5 1
G2P "C5'" F5 1
G2P "O5'" F5 1
G2P "O3'" F5 1
G2P "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G2P
_pdbe_chem_comp_rdkit_properties.exactmw 521.011
_pdbe_chem_comp_rdkit_properties.amw 521.209
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 202.442
_pdbe_chem_comp_rdkit_properties.tpsa 289.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.134
_pdbe_chem_comp_rdkit_properties.CrippenMR 99.161
_pdbe_chem_comp_rdkit_properties.chi0v 17.068
_pdbe_chem_comp_rdkit_properties.chi1v 11.780
_pdbe_chem_comp_rdkit_properties.chi2v 6.966
_pdbe_chem_comp_rdkit_properties.chi3v 6.966
_pdbe_chem_comp_rdkit_properties.chi4v 5.075
_pdbe_chem_comp_rdkit_properties.chi0n 32.385
_pdbe_chem_comp_rdkit_properties.chi1n 15.525
_pdbe_chem_comp_rdkit_properties.chi2n 3.015
_pdbe_chem_comp_rdkit_properties.chi3n 3.015
_pdbe_chem_comp_rdkit_properties.chi4n 1.981
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.520
_pdbe_chem_comp_rdkit_properties.kappa1 10.395
_pdbe_chem_comp_rdkit_properties.kappa2 8.682
_pdbe_chem_comp_rdkit_properties.kappa3 5.690
_pdbe_chem_comp_rdkit_properties.Phi 2.820
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G2P UniChem DrugBank DB03532
G2P UniChem ZINC ZINC000016051609
G2P UniChem 'PubChem TPHARMA' 163451290
G2P UniChem PubChem 135440070
G2P UniChem BRENDA 106231
G2P UniChem BRENDA 140147
G2P UniChem BRENDA 215007
G2P UniChem BRENDA 46196
G2P UniChem 'Probes And Drugs' PD059717
G2P UniChem Nikkaji J906.826K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G2P PG 4.104 4.057 -1.210 ETKDGv3 1
G2P O1G 4.928 2.972 -2.214 ETKDGv3 2
G2P O2G 3.611 5.214 -2.049 ETKDGv3 3
G2P O3G 5.165 4.651 -0.031 ETKDGv3 4
G2P O3B 2.761 3.293 -0.494 ETKDGv3 5
G2P PB 3.350 2.135 0.606 ETKDGv3 6
G2P O1B 4.500 1.131 -0.131 ETKDGv3 7
G2P O2B 3.956 2.828 1.806 ETKDGv3 8
G2P C3A 1.936 1.129 1.150 ETKDGv3 9
G2P PA 2.456 -0.154 2.338 ETKDGv3 10
G2P O1A 3.571 -1.213 1.624 ETKDGv3 11
G2P O2A 3.111 0.512 3.526 ETKDGv3 12
G2P "O5'" 1.081 -1.003 2.887 ETKDGv3 13
G2P "C5'" 0.727 -1.968 1.924 ETKDGv3 14
G2P "C4'" -0.655 -2.543 2.271 ETKDGv3 15
G2P "O4'" -1.603 -1.500 2.322 ETKDGv3 16
G2P "C3'" -1.125 -3.564 1.238 ETKDGv3 17
G2P "O3'" -1.980 -4.500 1.845 ETKDGv3 18
G2P "C2'" -1.880 -2.696 0.256 ETKDGv3 19
G2P "O2'" -2.976 -3.354 -0.337 ETKDGv3 20
G2P "C1'" -2.285 -1.465 1.084 ETKDGv3 21
G2P N9 -1.957 -0.225 0.377 ETKDGv3 22
G2P C8 -1.654 1.041 0.983 ETKDGv3 23
G2P N7 -1.868 2.063 0.207 ETKDGv3 24
G2P C5 -2.369 1.487 -0.993 ETKDGv3 25
G2P C6 -2.912 2.157 -2.167 ETKDGv3 26
G2P O6 -2.877 3.410 -2.292 ETKDGv3 27
G2P N1 -3.500 1.324 -3.177 ETKDGv3 28
G2P C2 -3.554 -0.108 -2.975 ETKDGv3 29
G2P N2 -4.157 -0.945 -3.961 ETKDGv3 30
G2P N3 -3.059 -0.641 -1.887 ETKDGv3 31
G2P C4 -2.444 0.187 -0.889 ETKDGv3 32
G2P H3A1 1.190 1.790 1.635 ETKDGv3 33
G2P H3A2 1.471 0.651 0.264 ETKDGv3 34
G2P "H5'1" 1.469 -2.798 1.935 ETKDGv3 35
G2P "H5'2" 0.680 -1.529 0.902 ETKDGv3 36
G2P "H4'" -0.589 -3.019 3.274 ETKDGv3 37
G2P "H3'" -0.278 -4.088 0.733 ETKDGv3 38
G2P HA -1.397 -5.159 2.305 ETKDGv3 39
G2P "H2'" -1.176 -2.398 -0.553 ETKDGv3 40
G2P HB -3.668 -3.505 0.358 ETKDGv3 41
G2P "H1'" -3.376 -1.470 1.296 ETKDGv3 42
G2P H8 -1.296 1.148 1.999 ETKDGv3 43
G2P H1 -3.898 1.750 -4.044 ETKDGv3 44
G2P H2N1 -4.203 -1.979 -3.822 ETKDGv3 45
G2P H2N2 -4.558 -0.533 -4.831 ETKDGv3 46
G2P HO1 4.230 2.598 -2.809 ETKDGv3 47
G2P HO2 4.628 5.303 0.487 ETKDGv3 48
G2P HO3 3.261 -1.327 0.690 ETKDGv3 49
G2P HO4 5.107 0.852 0.600 ETKDGv3 50
#