Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G2P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 -4.641 0.532 4.833
2 O1G O O1G N N N 0 -3.16 -0.078 5.052
3 O2G O O2G N N N 0 -5.476 0.603 6.078
4 O3G O O3G N N N 0 -5.251 -0.385 3.65
5 O3B O O3B N N N 0 -4.367 1.954 4.119
6 PB P PB R N N 0 -5.36 3.062 3.495
7 O1B O O1B N N N 0 -5.898 2.375 2.136
8 O2B O O2B N N N 0 -6.429 3.563 4.419
9 C3A C C3A N N N 0 -4.231 4.341 2.9
10 PA P PA S N N 0 -2.92 4.063 1.687
11 O1A O O1A N N N 0 -3.696 3.307 0.487
12 O2A O O2A N N N 0 -2.184 5.303 1.271
13 O5' O O5* N N N 0 -2.015 2.891 2.334
14 C5' C C5* N N N 0 -0.881 2.428 1.621
15 C4' C C4* R N N 0 -0.199 1.333 2.429
16 O4' O O4* N N N 0 -1.128 0.236 2.584
17 C3' C C3* S N N 0 1.032 0.761 1.734
18 O3' O O3* N N N 0 1.918 0.238 2.725
19 C2' C C2* R N N 0 0.447 -0.38 0.926
20 O2' O O2* N N N 0 1.399 -1.37 0.596
21 C1' C C1* R N N 0 -0.616 -0.91 1.877
22 N9 N N9 N Y N 0 -1.713 -1.611 1.213
23 C8 C C8 N Y N 0 -2.843 -1.031 0.688
24 N7 N N7 N Y N 0 -3.659 -1.916 0.15
25 C5 C C5 N Y N 0 -3.023 -3.107 0.34
26 C6 C C6 N Y N 0 -3.448 -4.424 -0.044
27 O6 O O6 N N N 0 -4.5 -4.657 -0.626
28 N1 N N1 N Y N 0 -2.501 -5.385 0.338
29 C2 C C2 N Y N 0 -1.287 -5.112 1.01
30 N2 N N2 N N N 0 -0.51 -6.207 1.286
31 N3 N N3 N Y N 0 -0.922 -3.895 1.351
32 C4 C C4 N Y N 0 -1.822 -2.953 0.991
33 H3A1 H 1H3A N N N 0 -3.751 4.775 3.785
34 H3A2 H 2H3A N N N 0 -4.865 5.131 2.48
35 H5'1 H 1H5* N N N 0 -1.208 2.042 0.651
36 H5'2 H 2H5* N N N 0 -0.199 3.269 1.46
37 H4' H H4* N N N 0 0.033 1.713 3.429
38 H3' H H3* N N N 0 1.592 1.484 1.136
39 HA H HA N N N 0 2.578 0.927 2.893
40 H2' H H2* N N N 0 -0.005 0.0 0.002
41 HB H HB N N N 0 2.066 -0.951 0.024
42 H1' H H1* N N N 0 -0.213 -1.625 2.603
43 H8 H H8 N N N 0 -3.012 0.037 0.729
44 H1 H H1 N N N 0 -2.704 -6.355 0.113
45 H2N1 H 1H2N N N N 0 0.044 -6.196 2.11
46 H2N2 H 2H2N N N N 0 -0.532 -6.972 0.651
47 HO1 H HO1 N N N 0 -3.059 -0.905 5.571
48 HO2 H HO2 N N N 0 -6.192 -0.272 3.399
49 HO3 H HO3 N N N 0 -3.203 3.08 -0.329
50 HO4 H HO4 N N N 0 -6.563 1.657 2.197