Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : EPH    

Bonds between two atoms of the molecule

Total Number of Bonds: 116


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C1 O2 C O sing 1.45 N N
3 C1 H11 C H sing 1.09 N N
4 C1 H12A C H sing 1.09 N N
5 C2 C37 C C sing 1.53 N N
6 C2 O1 C O sing 1.45 N N
7 C2 H2 C H sing 1.09 N N
8 C4 O2 C O sing 1.34 N N
9 C4 O4 C O doub 1.21 N N
10 C4 C18 C C sing 1.51 N N
11 C18 C19 C C sing 1.53 N N
12 C18 H181 C H sing 1.09 N N
13 C18 H182 C H sing 1.09 N N
14 C19 C20 C C sing 1.53 N N
15 C19 H191 C H sing 1.09 N N
16 C19 H192 C H sing 1.09 N N
17 C20 C21 C C sing 1.53 N N
18 C20 H201 C H sing 1.09 N N
19 C20 H202 C H sing 1.09 N N
20 C21 C22 C C sing 1.53 N N
21 C21 H211 C H sing 1.09 N N
22 C21 H212 C H sing 1.09 N N
23 C22 C23 C C sing 1.53 N N
24 C22 H221 C H sing 1.09 N N
25 C22 H222 C H sing 1.09 N N
26 C23 C24 C C sing 1.51 N N
27 C23 H231 C H sing 1.09 N N
28 C23 H232 C H sing 1.09 N N
29 C24 C25 C C doub 1.31 E N
30 C24 H24 C H sing 1.08 N N
31 C25 C26 C C sing 1.51 N N
32 C25 H25 C H sing 1.08 N N
33 C26 C27 C C sing 1.53 N N
34 C26 H261 C H sing 1.09 N N
35 C26 H262 C H sing 1.09 N N
36 C27 C28 C C sing 1.51 N N
37 C27 H271 C H sing 1.09 N N
38 C27 H272 C H sing 1.09 N N
39 C28 C29 C C doub 1.31 E N
40 C28 H28 C H sing 1.08 N N
41 C29 C30 C C sing 1.51 N N
42 C29 H29 C H sing 1.08 N N
43 C30 C31 C C sing 1.53 N N
44 C30 H301 C H sing 1.09 N N
45 C30 H302 C H sing 1.09 N N
46 C31 C32 C C sing 1.51 N N
47 C31 H311 C H sing 1.09 N N
48 C31 H312 C H sing 1.09 N N
49 C32 C33 C C doub 1.31 E N
50 C32 H32 C H sing 1.08 N N
51 C33 C34 C C sing 1.51 N N
52 C33 H33 C H sing 1.08 N N
53 C34 H341 C H sing 1.09 N N
54 C34 H342 C H sing 1.09 N N
55 C34 H343 C H sing 1.09 N N
56 C37 O5 C O sing 1.43 N N
57 C37 H371 C H sing 1.09 N N
58 C37 H372 C H sing 1.09 N N
59 O5 P1 O P sing 1.61 N N
60 C3 O1 C O sing 1.34 N N
61 C3 O3 C O doub 1.21 N N
62 C3 C5 C C sing 1.51 N N
63 C5 C6 C C sing 1.53 N N
64 C5 H51 C H sing 1.09 N N
65 C5 H52 C H sing 1.09 N N
66 C6 C7 C C sing 1.53 N N
67 C6 H61 C H sing 1.09 N N
68 C6 H62 C H sing 1.09 N N
69 C7 C8 C C sing 1.53 N N
70 C7 H71 C H sing 1.09 N N
71 C7 H72 C H sing 1.09 N N
72 C8 C9 C C sing 1.53 N N
73 C8 H81 C H sing 1.09 N N
74 C8 H82 C H sing 1.09 N N
75 C9 C10 C C sing 1.53 N N
76 C9 H91 C H sing 1.09 N N
77 C9 H92 C H sing 1.09 N N
78 C10 C11 C C sing 1.53 N N
79 C10 H101 C H sing 1.09 N N
80 C10 H102 C H sing 1.09 N N
81 C11 C12 C C sing 1.51 N N
82 C11 H111 C H sing 1.09 N N
83 C11 H112 C H sing 1.09 N N
84 C12 C13 C C doub 1.31 E N
85 C12 H12 C H sing 1.08 N N
86 C13 C14 C C sing 1.51 N N
87 C13 H13 C H sing 1.08 N N
88 C14 C15 C C sing 1.51 N N
89 C14 H141 C H sing 1.09 N N
90 C14 H142 C H sing 1.09 N N
91 C15 C16 C C doub 1.31 E N
92 C15 H15 C H sing 1.08 N N
93 C16 C17 C C sing 1.51 N N
94 C16 H16 C H sing 1.08 N N
95 C17 C35 C C sing 1.53 N N
96 C17 H171 C H sing 1.09 N N
97 C17 H172 C H sing 1.09 N N
98 C35 C36 C C sing 1.53 N N
99 C35 H351 C H sing 1.09 N N
100 C35 H352 C H sing 1.09 N N
101 C36 H361 C H sing 1.09 N N
102 C36 H362 C H sing 1.09 N N
103 C36 H363 C H sing 1.09 N N
104 P1 O6 P O sing 1.61 N N
105 P1 O7 P O doub 1.48 N N
106 P1 O8 P O sing 1.61 N N
107 O6 HO6 O H sing 0.97 N N
108 O8 C38 O C sing 1.43 N N
109 C38 C39 C C sing 1.53 N N
110 C38 H381 C H sing 1.09 N N
111 C38 H382 C H sing 1.09 N N
112 C39 N1 C N sing 1.47 N N
113 C39 H391 C H sing 1.09 N N
114 C39 H392 C H sing 1.09 N N
115 N1 HN11 N H sing 1.01 N N
116 N1 HN12 N H sing 1.01 N N