Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EPH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 117


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 4.399 -1.006 -1.502
2 C2 C C2 R N N 0 3.659 -1.373 -2.79
3 C4 C C4 N N N 0 3.871 -0.575 0.819
4 O2 O O2 N N N 0 3.446 -0.891 -0.413
5 O4 O O4 N N N 0 5.047 -0.387 1.023
6 C18 C C18 N N N 0 2.882 -0.455 1.95
7 C19 C C19 N N N 0 3.622 -0.089 3.238
8 C20 C C20 N N N 0 2.618 0.032 4.386
9 C21 C C21 N N N 0 3.358 0.398 5.674
10 C22 C C22 N N N 0 2.353 0.52 6.822
11 C23 C C23 N N N 0 3.093 0.886 8.11
12 C24 C C24 N N N 0 2.104 1.006 9.241
13 C25 C C25 N N N 0 2.214 0.232 10.292
14 C26 C C26 N N N 0 1.225 0.352 11.423
15 C27 C C27 N N N 0 0.503 -0.983 11.612
16 C28 C C28 N N N 0 -0.485 -0.863 12.743
17 C29 C C29 N N N 0 -1.76 -1.067 12.522
18 C30 C C30 N N N 0 -2.749 -0.948 13.653
19 C31 C C31 N N N 0 -3.771 0.142 13.324
20 C32 C C32 N N N 0 -4.76 0.261 14.454
21 C33 C C33 N N N 0 -4.885 1.396 15.098
22 C34 C C34 N N N 0 -5.874 1.515 16.229
23 C37 C C37 N N N 0 4.663 -1.494 -3.938
24 O5 O O5 N N N 0 5.338 -0.247 -4.115
25 C3 C C3 N N N 0 1.561 -0.652 -3.759
26 O1 O O1 N N N 0 2.689 -0.338 -3.103
27 O3 O O3 N N N 0 1.352 -1.795 -4.089
28 C5 C C5 N N N 0 0.555 0.422 -4.083
29 C6 C C6 N N N 0 -0.629 -0.197 -4.827
30 C7 C C7 N N N 0 -1.651 0.893 -5.157
31 C8 C C8 N N N 0 -2.835 0.274 -5.901
32 C9 C C9 N N N 0 -3.857 1.364 -6.23
33 C10 C C10 N N N 0 -5.042 0.745 -6.974
34 C11 C C11 N N N 0 -6.063 1.836 -7.304
35 C12 C C12 N N N 0 -7.23 1.226 -8.037
36 C13 C C13 N N N 0 -8.436 1.306 -7.531
37 C14 C C14 N N N 0 -9.603 0.696 -8.264
38 C15 C C15 N N N 0 -10.249 -0.351 -7.395
39 C16 C C16 N N N 0 -11.506 -0.228 -7.046
40 C17 C C17 N N N 0 -12.152 -1.276 -6.177
41 C35 C C35 N N N 0 -12.645 -0.631 -4.881
42 C36 C C36 N N N 0 -13.302 -1.695 -3.999
43 P1 P P1 R N N 0 6.373 -0.447 -5.332
44 O6 O O6 N N N 0 7.418 -1.614 -4.962
45 O7 O O7 N N N 0 5.63 -0.82 -6.556
46 O8 O O8 N N N 0 7.172 0.927 -5.587
47 C38 C C38 N N N 0 8.07 0.687 -6.672
48 C39 C C39 N N N 0 8.865 1.96 -6.968
49 N1 N N1 N N N 0 9.631 2.348 -5.775
50 H11 H 1H1 N N N 0 5.126 -1.783 -1.268
51 H12A H 2H1 N N N 0 4.913 -0.055 -1.637
52 H2 H H2 N N N 0 3.144 -2.324 -2.656
53 H181 H 1H18 N N N 0 2.154 0.32 1.716
54 H182 H 2H18 N N N 0 2.367 -1.407 2.085
55 H191 H 1H19 N N N 0 4.35 -0.866 3.473
56 H192 H 2H19 N N N 0 4.137 0.861 3.104
57 H201 H 1H20 N N N 0 1.89 0.808 4.152
58 H202 H 2H20 N N N 0 2.103 -0.919 4.521
59 H211 H 1H21 N N N 0 4.085 -0.378 5.909
60 H212 H 2H21 N N N 0 3.872 1.349 5.54
61 H221 H 1H22 N N N 0 1.626 1.296 6.588
62 H222 H 2H22 N N N 0 1.839 -0.431 6.957
63 H231 H 1H23 N N N 0 3.821 0.109 8.345
64 H232 H 2H23 N N N 0 3.608 1.837 7.976
65 H24 H H24 N N N 0 1.304 1.729 9.185
66 H25 H H25 N N N 0 3.014 -0.491 10.349
67 H261 H 1H26 N N N 0 1.752 0.613 12.341
68 H262 H 2H26 N N N 0 0.498 1.128 11.188
69 H271 H 1H27 N N N 0 -0.023 -1.244 10.694
70 H272 H 2H27 N N N 0 1.231 -1.76 11.847
71 H28 H H28 N N N 0 -0.143 -0.609 13.735
72 H29 H H29 N N N 0 -2.103 -1.322 11.53
73 H301 H 1H30 N N N 0 -3.264 -1.899 13.788
74 H302 H 2H30 N N N 0 -2.222 -0.687 14.57
75 H311 H 1H31 N N N 0 -3.256 1.093 13.189
76 H312 H 2H31 N N N 0 -4.298 -0.118 12.406
77 H32 H H32 N N N 0 -5.366 -0.587 14.734
78 H33 H H33 N N N 0 -4.279 2.245 14.818
79 H341 H 1H34 N N N 0 -5.836 2.524 16.639
80 H342 H 2H34 N N N 0 -6.878 1.312 15.856
81 H343 H 3H34 N N N 0 -5.623 0.796 17.008
82 H371 H 1H37 N N N 0 5.391 -2.271 -3.704
83 H372 H 2H37 N N N 0 4.136 -1.755 -4.856
84 H51 H 1H5 N N N 0 1.022 1.18 -4.711
85 H52 H 2H5 N N N 0 0.203 0.881 -3.159
86 H61 H 1H6 N N N 0 -1.097 -0.955 -4.199
87 H62 H 2H6 N N N 0 -0.278 -0.656 -5.751
88 H71 H 1H7 N N N 0 -1.183 1.651 -5.785
89 H72 H 2H7 N N N 0 -2.002 1.353 -4.233
90 H81 H 1H8 N N N 0 -3.303 -0.483 -5.273
91 H82 H 2H8 N N N 0 -2.484 -0.185 -6.825
92 H91 H 1H9 N N N 0 -3.389 2.123 -6.858
93 H92 H 2H9 N N N 0 -4.208 1.824 -5.306
94 H101 H 1H10 N N N 0 -5.509 -0.012 -6.346
95 H102 H 2H10 N N N 0 -4.69 0.286 -7.898
96 H111 H 1H11 N N N 0 -5.596 2.594 -7.932
97 H112 H 2H11 N N N 0 -6.414 2.295 -6.38
98 H12 H H12 N N N 0 -7.073 0.723 -8.979
99 H13 H H13 N N N 0 -8.593 1.809 -6.588
100 H141 H 1H14 N N N 0 -9.251 0.237 -9.188
101 H142 H 2H14 N N N 0 -10.331 1.473 -8.498
102 H15 H H15 N N N 0 -9.677 -1.204 -7.061
103 H16 H H16 N N N 0 -12.078 0.624 -7.38
104 H171 H 1H17 N N N 0 -11.425 -2.053 -5.943
105 H172 H 2H17 N N N 0 -12.996 -1.717 -6.708
106 H351 H 1H35 N N N 0 -13.373 0.145 -5.115
107 H352 H 2H35 N N N 0 -11.801 -0.19 -4.35
108 H361 H 1H36 N N N 0 -13.653 -1.236 -3.075
109 H362 H 2H36 N N N 0 -14.146 -2.136 -4.529
110 H363 H 3H36 N N N 0 -12.574 -2.472 -3.764
111 HO6 H HO6 N N N 0 7.88 -1.332 -4.16
112 H381 H 1H38 N N N 0 8.757 -0.115 -6.405
113 H382 H 2H38 N N N 0 7.502 0.4 -7.557
114 H391 H 1H39 N N N 0 9.55 1.777 -7.796
115 H392 H 2H39 N N N 0 8.178 2.763 -7.235
116 HN11 H 1HN1 N N N 0 10.136 3.187 -6.015
117 HN12 H 2HN1 N N N 0 8.957 2.606 -5.07