Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DLL    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O CAZ O C doub 1.21 N N
2 CB CG C C sing 1.51 N N
3 CB CAZ C C sing 1.51 N N
4 CG CD2 C C sing 1.38 N Y
5 CG CD1 C C doub 1.38 N Y
6 CD2 CE2 C C doub 1.38 N Y
7 CD1 CE1 C C sing 1.38 N Y
8 CE2 CZ C C sing 1.38 N Y
9 CE1 CZ C C doub 1.38 N Y
10 P O2P P O doub 1.48 N N
11 P O3P P O sing 1.61 N N
12 P O1P P O sing 1.61 N N
13 P O5' P O sing 1.61 N N
14 O1P CAZ O C sing 1.34 N N
15 O5' C5' O C sing 1.43 N N
16 C5' C4' C C sing 1.53 N N
17 O4' C1' O C sing 1.44 N N
18 O4' C4' O C sing 1.44 N N
19 O3' C3' O C sing 1.43 N N
20 C2' O2' C O sing 1.43 N N
21 C2' C1' C C sing 1.55 N N
22 C2' C3' C C sing 1.55 N N
23 C1' N9 C N sing 1.46 N N
24 N9 C8 N C sing 1.36 N Y
25 N9 C4 N C sing 1.37 N Y
26 C8 N7 C N doub 1.3 N Y
27 N7 C5 N C sing 1.36 N Y
28 C5 C6 C C doub 1.41 N Y
29 C5 C4 C C sing 1.4 N Y
30 C6 N6 C N sing 1.38 N N
31 C6 N1 C N sing 1.33 N Y
32 C4' C3' C C sing 1.54 N N
33 N1 C2 N C doub 1.32 N Y
34 C2 N3 C N sing 1.32 N Y
35 CB HB1C C H sing 1.09 N N
36 CB HB2C C H sing 1.09 N N
37 CD2 HD2 C H sing 1.08 N N
38 CD1 HD1 C H sing 1.08 N N
39 CE2 HE2 C H sing 1.08 N N
40 CE1 HE1 C H sing 1.08 N N
41 CZ HZ C H sing 1.08 N N
42 O3P H3P O H sing 0.97 N N
43 C5' H5'1 C H sing 1.09 N N
44 C5' H5'2 C H sing 1.09 N N
45 C4' H4' C H sing 1.09 N N
46 C1' H1' C H sing 1.09 N N
47 O3' H3' O H sing 0.97 N N
48 C3' HA C H sing 1.09 N N
49 C2' H2' C H sing 1.09 N N
50 O2' HB O H sing 0.97 N N
51 C8 H8 C H sing 1.08 N N
52 N6 H61N N H sing 0.97 N N
53 N6 H62N N H sing 0.97 N N
54 C2 H2 C H sing 1.08 N N
55 C4 N3 C N doub 1.33 N Y